Wall clock time and date at job start Tue Mar 31 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 H 1.08997 * 109.47751 * 54.99871 * 3 2 1 5 5 O 1.45205 * 109.46814 * 294.99456 * 3 2 1 6 6 C 1.34232 * 116.99627 * 90.00376 * 5 3 2 7 7 O 1.20822 * 119.99905 * 359.97438 * 6 5 3 8 8 C 1.50701 * 119.99990 * 180.02562 * 6 5 3 9 9 C 1.50700 * 109.47142 * 179.97438 * 8 6 5 10 10 C 1.37639 * 120.12226 * 264.99598 * 9 8 6 11 11 C 1.38619 * 120.24239 * 179.74445 * 10 9 8 12 12 C 1.38649 * 120.50201 * 0.26191 * 11 10 9 13 13 C 1.37590 * 120.25257 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.13135 * 85.26575 * 9 8 6 15 15 C 1.41396 * 120.24305 * 0.02562 * 14 9 8 16 16 H 1.08008 * 119.99856 * 334.30298 * 15 14 9 17 17 C 1.39946 * 120.00304 * 154.30177 * 15 14 9 18 18 N 1.30823 * 119.99468 * 343.65178 * 17 15 14 19 19 Si 1.86796 * 120.00127 * 163.65186 * 17 15 14 20 20 H 1.48494 * 109.47087 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47037 * 120.00439 * 19 17 15 22 22 H 1.48499 * 109.46933 * 239.99769 * 19 17 15 23 23 C 1.50704 * 109.47163 * 175.00308 * 3 2 1 24 24 C 1.50705 * 119.99451 * 284.99315 * 23 3 2 25 25 O 1.20759 * 120.00180 * 104.99558 * 23 3 2 26 26 H 1.09003 * 109.46987 * 300.00209 * 1 2 3 27 27 H 1.08993 * 109.47218 * 60.00470 * 1 2 3 28 28 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47455 * 239.99245 * 2 1 3 30 30 H 1.09007 * 109.47334 * 119.99430 * 2 1 3 31 31 H 1.09000 * 109.46834 * 59.99449 * 8 6 5 32 32 H 1.09002 * 109.46843 * 299.99703 * 8 6 5 33 33 H 1.07999 * 119.87936 * 0.02750 * 10 9 8 34 34 H 1.07998 * 119.74393 * 180.23248 * 11 10 9 35 35 H 1.08000 * 119.87453 * 180.02562 * 12 11 10 36 36 H 1.07999 * 120.13414 * 180.02562 * 13 12 11 37 37 H 0.97003 * 119.99997 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.47110 * 0.02562 * 24 23 3 39 39 H 1.09004 * 109.46963 * 120.00439 * 24 23 3 40 40 H 1.09002 * 109.46737 * 239.99818 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6559 2.0916 -1.2408 6 6 0.4728 2.7254 -1.2561 7 8 -0.2192 2.7370 -0.2657 8 6 0.0070 3.4215 -2.5089 9 6 -1.3411 4.0488 -2.2635 10 6 -2.4901 3.3731 -2.6065 11 6 -3.7316 3.9455 -2.3770 12 6 -3.8311 5.2048 -1.8055 13 6 -2.6957 5.9009 -1.4601 14 6 -1.4299 5.3296 -1.6881 15 6 -0.2561 6.0357 -1.3374 16 1 0.6516 5.4959 -1.1110 17 6 -0.2704 7.4341 -1.2837 18 7 -1.2415 8.1006 -1.8532 19 14 1.0970 8.3488 -0.3989 20 1 2.0678 7.3717 0.1558 21 1 1.7914 9.2472 -1.3559 22 1 0.5188 9.1549 0.7062 23 6 3.5419 1.4442 0.1238 24 6 4.1888 1.1442 1.4514 25 8 4.2270 1.6861 -0.8408 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 -0.0719 2.6968 -3.3193 32 1 0.7240 4.1956 -2.7823 33 1 -2.4244 2.3914 -3.0519 34 1 -4.6280 3.4065 -2.6458 35 1 -4.8035 5.6409 -1.6308 36 1 -2.7754 6.8816 -1.0146 37 1 -1.2513 9.0698 -1.8163 38 1 3.4169 0.9519 2.1965 39 1 4.8267 0.2656 1.3545 40 1 4.7909 1.9977 1.7633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873376586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:45 Heat of formation + Delta-G solvation = -132.239173 kcal Electronic energy + Delta-G solvation = -23334.232511 eV Core-core repulsion = 19884.935046 eV Total energy + Delta-G solvation = -3449.297465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88408 -40.37015 -39.37757 -37.38660 -35.54879 -34.88284 -33.50429 -31.42388 -31.38664 -29.18972 -27.89761 -26.89356 -23.47689 -22.87833 -22.61831 -21.08606 -20.79001 -19.11891 -18.81731 -17.89787 -17.45421 -17.21248 -16.39060 -16.30156 -16.01133 -15.71961 -15.48672 -15.39818 -14.95922 -14.43096 -14.16724 -13.65079 -13.48101 -13.43181 -13.33038 -13.09885 -13.06070 -12.95117 -12.93014 -12.80886 -12.76326 -12.54758 -12.14923 -11.97482 -11.61840 -11.37234 -11.35043 -11.26431 -11.07080 -10.59273 -9.26794 -9.23982 -8.64795 -6.35393 0.76305 0.90349 1.06886 1.33140 1.35099 1.45902 1.49067 1.75508 2.16752 2.73490 2.94153 3.68685 3.72548 3.83504 3.97459 4.05522 4.20974 4.31507 4.38888 4.43790 4.54423 4.60149 4.62989 4.68408 4.73708 4.74624 4.91809 4.96116 5.04170 5.09446 5.15128 5.30913 5.33424 5.45091 5.49909 5.72561 5.99726 6.11095 6.18770 6.36596 6.37334 6.68581 6.91484 6.94104 7.05282 8.31850 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.005926 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.217616 B = 4724.016169 C = 6304.682779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.018 3.982 4 H 0.108 0.892 5 O -0.355 6.355 6 C 0.467 3.533 7 O -0.512 6.512 8 C -0.045 4.045 9 C -0.198 4.198 10 C -0.083 4.083 11 C -0.239 4.239 12 C -0.111 4.111 13 C -0.189 4.189 14 C 0.099 3.901 15 C -0.486 4.486 16 H 0.066 0.934 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.262 1.262 22 H -0.263 1.263 23 C 0.361 3.639 24 C -0.189 4.189 25 O -0.482 6.482 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.288 0.712 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -12.840 5.822 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.038 4.038 4 H 0.126 0.874 5 O -0.273 6.273 6 C 0.311 3.689 7 O -0.400 6.400 8 C -0.082 4.082 9 C -0.200 4.200 10 C -0.101 4.101 11 C -0.258 4.258 12 C -0.130 4.130 13 C -0.209 4.209 14 C 0.097 3.903 15 C -0.515 4.515 16 H 0.084 0.916 17 C -0.176 4.176 18 N -0.447 5.447 19 Si 0.790 3.210 20 H -0.189 1.189 21 H -0.186 1.186 22 H -0.187 1.187 23 C 0.237 3.763 24 C -0.245 4.245 25 O -0.356 6.356 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.138 0.862 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.415 -12.485 5.575 15.554 hybrid contribution 0.080 0.961 0.319 1.016 sum 7.495 -11.524 5.894 14.957 Atomic orbital electron populations 1.21786 0.94950 1.02347 1.01415 1.21854 0.96785 0.91827 1.05426 1.23780 0.95914 0.96841 0.87227 0.87423 1.86659 1.37635 1.64054 1.38909 1.24214 0.78365 0.75094 0.91240 1.90607 1.55412 1.57675 1.36278 1.19984 0.96053 0.99385 0.92749 1.19384 0.92880 0.97749 1.09966 1.20721 0.92270 0.98197 0.98897 1.20729 0.96952 0.97331 1.10786 1.20983 0.97295 0.95404 0.99292 1.21286 0.92629 1.00604 1.06348 1.17700 0.93298 0.91274 0.88007 1.19631 0.97179 0.91816 1.42912 0.91631 1.26620 0.98993 0.98621 0.93388 1.69867 1.32206 1.09691 1.32981 0.85364 0.78345 0.78318 0.79016 1.18938 1.18628 1.18741 1.25260 0.88885 0.70501 0.91606 1.22276 1.03540 1.05917 0.92774 1.90429 1.66335 1.36423 1.42433 0.92787 0.95438 0.90130 0.90474 0.85757 0.86312 0.88311 0.86402 0.86357 0.87363 0.88351 0.90170 0.87166 0.86185 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.56 71.98 0.62 -3.04 16 2 C -0.12 -2.50 5.62 30.59 0.17 -2.33 16 3 C 0.02 0.49 2.51 29.85 0.08 0.57 16 4 H 0.11 3.03 7.16 -2.39 -0.02 3.02 16 5 O -0.35 -12.82 9.40 -45.20 -0.43 -13.24 16 6 C 0.47 18.91 6.07 71.24 0.43 19.34 16 7 O -0.51 -22.88 13.17 21.97 0.29 -22.59 16 8 C -0.04 -1.83 5.29 29.10 0.15 -1.67 16 9 C -0.20 -9.50 4.43 -19.41 -0.09 -9.59 16 10 C -0.08 -3.63 9.66 22.22 0.21 -3.42 16 11 C -0.24 -10.50 10.05 22.46 0.23 -10.27 16 12 C -0.11 -5.32 10.02 22.21 0.22 -5.10 16 13 C -0.19 -10.25 8.68 22.73 0.20 -10.05 16 14 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 15 C -0.49 -26.45 8.15 23.46 0.19 -26.26 16 16 H 0.07 3.54 6.68 -2.91 -0.02 3.52 16 17 C 0.04 2.00 5.16 85.26 0.44 2.44 16 18 N -0.82 -43.42 10.97 21.83 0.24 -43.18 16 19 Si 0.97 39.54 29.59 68.60 2.03 41.57 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 23 C 0.36 8.78 6.56 29.10 0.19 8.97 16 24 C -0.19 -2.36 10.28 71.24 0.73 -1.63 16 25 O -0.48 -15.96 17.31 16.94 0.29 -15.67 16 26 H 0.05 1.46 7.80 -2.39 -0.02 1.44 16 27 H 0.03 0.83 6.06 -2.39 -0.01 0.82 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.12 1.52 8.10 -2.38 -0.02 1.50 16 31 H 0.12 4.02 8.05 -2.39 -0.02 4.01 16 32 H 0.10 4.22 7.04 -2.39 -0.02 4.20 16 33 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.10 5.58 6.22 -2.91 -0.02 5.56 16 37 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 38 H 0.11 0.85 8.00 -2.39 -0.02 0.83 16 39 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.76 338.52 7.13 -62.63 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 1.04 Total: 27.23 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.66 Total: -36.75 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.24 Total: -43.18 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: 0.16 Total: -51.50 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -69.76 7.13 -62.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873376586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.605 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds