Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47074 * 2 1 4 4 H 1.09004 * 109.47026 * 304.99688 * 3 2 1 5 5 O 1.45195 * 109.47420 * 64.99921 * 3 2 1 6 6 C 1.34230 * 117.00277 * 210.00153 * 5 3 2 7 7 O 1.20823 * 119.99740 * 359.97438 * 6 5 3 8 8 C 1.50695 * 120.00274 * 180.02562 * 6 5 3 9 9 C 1.50701 * 109.47556 * 179.97438 * 8 6 5 10 10 C 1.37633 * 120.12801 * 265.00650 * 9 8 6 11 11 C 1.38617 * 120.24598 * 180.29530 * 10 9 8 12 12 C 1.38655 * 120.49962 * 359.43755 * 11 10 9 13 13 C 1.37604 * 120.25111 * 0.55942 * 12 11 10 14 14 C 1.40697 * 120.12236 * 85.01918 * 9 8 6 15 15 C 1.41390 * 120.25030 * 359.96070 * 14 9 8 16 16 H 1.08004 * 119.99865 * 334.08548 * 15 14 9 17 17 C 1.39940 * 120.00399 * 154.08926 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.61139 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.62242 * 17 15 14 20 20 H 1.48494 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47407 * 119.99663 * 19 17 15 22 22 H 1.48508 * 109.46756 * 239.99409 * 19 17 15 23 23 C 1.50697 * 109.47015 * 184.99969 * 3 2 1 24 24 C 1.50707 * 120.00215 * 79.99879 * 23 3 2 25 25 O 1.20767 * 120.00058 * 259.99946 * 23 3 2 26 26 H 1.09007 * 109.46916 * 59.99967 * 1 2 3 27 27 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47375 * 300.00273 * 1 2 3 29 29 H 1.08999 * 109.46662 * 239.99721 * 2 1 3 30 30 H 1.08998 * 109.46645 * 119.99934 * 2 1 3 31 31 H 1.09003 * 109.47324 * 59.99706 * 8 6 5 32 32 H 1.09000 * 109.47440 * 299.99785 * 8 6 5 33 33 H 1.07994 * 119.88003 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.74833 * 179.69429 * 11 10 9 35 35 H 1.08004 * 119.87487 * 180.29906 * 12 11 10 36 36 H 1.07992 * 120.12974 * 179.74704 * 13 12 11 37 37 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47167 * 89.99977 * 24 23 3 39 39 H 1.08997 * 109.47042 * 210.00553 * 24 23 3 40 40 H 1.09002 * 109.46789 * 330.00050 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6559 2.0917 1.2406 6 6 1.4468 3.4168 1.1957 7 8 1.5807 4.0145 0.1542 8 6 1.0461 4.1592 2.4444 9 6 0.8756 5.6223 2.1261 10 6 1.9151 6.5001 2.3337 11 6 1.7590 7.8474 2.0476 12 6 0.5606 8.3246 1.5391 13 6 -0.4922 7.4652 1.3236 14 6 -0.3470 6.0962 1.6160 15 6 -1.4217 5.2037 1.3981 16 1 -1.2260 4.1580 1.2118 17 6 -2.7391 5.6751 1.4239 18 7 -3.0065 6.8405 1.9548 19 14 -4.1158 4.6402 0.7006 20 1 -3.5544 3.3738 0.1656 21 1 -5.1120 4.3328 1.7580 22 1 -4.7754 5.3917 -0.3974 23 6 3.5419 1.4442 -0.1238 24 6 4.1870 1.2559 -1.4727 25 8 4.2285 1.5966 0.8579 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8206 4.0404 3.2021 32 1 0.1054 3.7568 2.8203 33 1 2.8545 6.1387 2.7250 34 1 2.5784 8.5300 2.2182 35 1 0.4516 9.3756 1.3152 36 1 -1.4261 7.8396 0.9313 37 1 -3.9195 7.1675 1.9723 38 1 4.3291 2.2273 -1.9463 39 1 5.1534 0.7675 -1.3482 40 1 3.5450 0.6366 -2.0992 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873376587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = -120.094061 kcal Electronic energy + Delta-G solvation = -23287.076637 eV Core-core repulsion = 19838.305823 eV Total energy + Delta-G solvation = -3448.770813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50114 -38.96696 -37.58874 -36.05818 -33.81991 -33.66824 -31.80532 -30.54645 -29.50831 -27.67089 -26.51986 -25.04940 -22.23709 -21.55983 -20.96026 -19.66090 -19.37086 -17.36246 -17.20290 -16.61634 -16.02922 -15.42011 -15.02680 -14.74045 -14.72574 -14.48613 -14.24169 -13.61887 -13.47450 -13.22048 -12.72009 -12.62439 -12.27462 -12.17879 -12.05077 -11.82471 -11.60332 -11.40298 -11.32343 -11.17019 -11.03061 -10.94128 -10.91152 -10.73482 -10.42212 -9.78830 -9.52717 -9.43013 -9.39444 -9.20557 -7.37587 -7.35132 -6.78218 -4.39922 1.81829 2.64616 2.83845 2.88575 3.05020 3.09773 3.23167 3.25678 3.90424 3.92926 4.61929 4.67837 4.80954 4.92934 5.01463 5.20120 5.27819 5.39792 5.50977 5.58812 5.74112 5.75590 5.81118 5.91916 5.98489 6.09011 6.22850 6.26996 6.40100 6.48410 6.71126 6.89230 7.04269 7.25304 7.37302 7.38372 7.59868 7.87579 8.00887 8.08944 8.26319 8.41576 8.60271 8.86136 8.95857 10.15966 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.005904 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.404852 B = 4741.743840 C = 6290.291205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.036 3.964 4 H 0.111 0.889 5 O -0.342 6.342 6 C 0.460 3.540 7 O -0.494 6.494 8 C -0.041 4.041 9 C -0.195 4.195 10 C -0.076 4.076 11 C -0.239 4.239 12 C -0.104 4.104 13 C -0.158 4.158 14 C 0.130 3.870 15 C -0.458 4.458 16 H 0.074 0.926 17 C 0.078 3.922 18 N -0.792 5.792 19 Si 0.903 3.097 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.272 1.272 23 C 0.341 3.659 24 C -0.201 4.201 25 O -0.441 6.441 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.280 0.720 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -11.677 -4.759 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.020 4.020 4 H 0.129 0.871 5 O -0.260 6.260 6 C 0.303 3.697 7 O -0.379 6.379 8 C -0.078 4.078 9 C -0.196 4.196 10 C -0.095 4.095 11 C -0.258 4.258 12 C -0.122 4.122 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.487 4.487 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.417 5.417 19 Si 0.727 3.273 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.197 1.197 23 C 0.214 3.786 24 C -0.258 4.258 25 O -0.312 6.312 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.201 -11.274 -4.508 13.209 hybrid contribution -0.685 -0.263 -0.585 0.938 sum 4.517 -11.537 -5.093 13.396 Atomic orbital electron populations 1.21766 0.93980 1.02106 1.03274 1.21509 0.97804 0.91993 1.03434 1.23191 0.93754 0.95907 0.89180 0.87142 1.86686 1.79466 1.24388 1.35505 1.24622 0.72870 0.79637 0.92600 1.90615 1.46852 1.67874 1.32576 1.19991 1.03138 0.93214 0.91454 1.19051 0.97058 0.91242 1.12254 1.20345 0.96055 0.93620 0.99455 1.20319 0.97830 0.94854 1.12832 1.20705 0.94023 0.97542 0.99960 1.21296 0.98055 0.93819 1.04581 1.17352 0.90649 0.92445 0.86764 1.19506 0.90094 0.96100 1.43020 0.90782 1.25883 1.00322 0.95121 0.92689 1.69822 1.21850 1.18206 1.31819 0.86340 0.80392 0.80943 0.79585 1.18419 1.19885 1.19670 1.25104 0.91335 0.71271 0.90850 1.22280 1.02533 1.04928 0.96071 1.90420 1.65879 1.34252 1.40694 0.92324 0.92069 0.91408 0.89733 0.90359 0.89238 0.87357 0.89537 0.89495 0.89438 0.86428 0.90892 0.88113 0.89438 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.81 37.16 0.36 -1.31 16 2 C -0.11 -1.16 5.63 -26.73 -0.15 -1.31 16 3 C 0.04 0.52 2.27 -27.89 -0.06 0.45 16 4 H 0.11 1.60 7.16 -51.93 -0.37 1.23 16 5 O -0.34 -6.13 9.04 -45.67 -0.41 -6.54 16 6 C 0.46 9.56 7.56 36.00 0.27 9.83 16 7 O -0.49 -11.54 15.25 -18.75 -0.29 -11.82 16 8 C -0.04 -0.84 5.29 -29.04 -0.15 -1.00 16 9 C -0.19 -4.73 4.43 -103.91 -0.46 -5.19 16 10 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 11 C -0.24 -5.57 10.05 -39.29 -0.39 -5.96 16 12 C -0.10 -2.51 10.02 -39.66 -0.40 -2.91 16 13 C -0.16 -4.18 8.68 -38.87 -0.34 -4.52 16 14 C 0.13 3.46 5.56 -106.83 -0.59 2.86 16 15 C -0.46 -11.88 8.14 -37.75 -0.31 -12.19 16 16 H 0.07 1.87 6.68 -52.48 -0.35 1.52 16 17 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 18 N -0.79 -20.14 10.97 55.55 0.61 -19.53 16 19 Si 0.90 18.46 29.59 -169.99 -5.03 13.43 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C 0.34 4.76 6.50 -29.03 -0.19 4.57 16 24 C -0.20 -1.87 10.25 36.01 0.37 -1.50 16 25 O -0.44 -7.80 17.36 -12.83 -0.22 -8.03 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 29 H 0.08 0.62 7.95 -51.93 -0.41 0.21 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.64 8.05 -51.93 -0.42 1.22 16 32 H 0.11 2.19 7.06 -51.93 -0.37 1.82 16 33 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 36 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 37 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -31.22 344.59 -8.24 -39.47 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.58 Total: 6.34 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.51 Total: -18.50 kcal Atomic # 7 Polarization: -20.14 SS G_CDS: 0.61 Total: -19.53 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.92 Total: -26.40 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.22 -8.24 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873376587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.629 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds