Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47074 * 2 1 4 4 H 1.09004 * 109.47026 * 304.99688 * 3 2 1 5 5 O 1.45195 * 109.47420 * 64.99921 * 3 2 1 6 6 C 1.34230 * 117.00277 * 210.00153 * 5 3 2 7 7 O 1.20823 * 119.99740 * 359.97438 * 6 5 3 8 8 C 1.50695 * 120.00274 * 180.02562 * 6 5 3 9 9 C 1.50701 * 109.47556 * 179.97438 * 8 6 5 10 10 C 1.37633 * 120.12801 * 265.00650 * 9 8 6 11 11 C 1.38617 * 120.24598 * 180.29530 * 10 9 8 12 12 C 1.38655 * 120.49962 * 359.43755 * 11 10 9 13 13 C 1.37604 * 120.25111 * 0.55942 * 12 11 10 14 14 C 1.40697 * 120.12236 * 85.01918 * 9 8 6 15 15 C 1.41390 * 120.25030 * 359.96070 * 14 9 8 16 16 H 1.08004 * 119.99865 * 334.08548 * 15 14 9 17 17 C 1.39940 * 120.00399 * 154.08926 * 15 14 9 18 18 N 1.30822 * 119.99912 * 343.61139 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 163.62242 * 17 15 14 20 20 H 1.48494 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47407 * 119.99663 * 19 17 15 22 22 H 1.48508 * 109.46756 * 239.99409 * 19 17 15 23 23 C 1.50697 * 109.47015 * 184.99969 * 3 2 1 24 24 C 1.50707 * 120.00215 * 79.99879 * 23 3 2 25 25 O 1.20767 * 120.00058 * 259.99946 * 23 3 2 26 26 H 1.09007 * 109.46916 * 59.99967 * 1 2 3 27 27 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47375 * 300.00273 * 1 2 3 29 29 H 1.08999 * 109.46662 * 239.99721 * 2 1 3 30 30 H 1.08998 * 109.46645 * 119.99934 * 2 1 3 31 31 H 1.09003 * 109.47324 * 59.99706 * 8 6 5 32 32 H 1.09000 * 109.47440 * 299.99785 * 8 6 5 33 33 H 1.07994 * 119.88003 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.74833 * 179.69429 * 11 10 9 35 35 H 1.08004 * 119.87487 * 180.29906 * 12 11 10 36 36 H 1.07992 * 120.12974 * 179.74704 * 13 12 11 37 37 H 0.97001 * 120.00439 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47167 * 89.99977 * 24 23 3 39 39 H 1.08997 * 109.47042 * 210.00553 * 24 23 3 40 40 H 1.09002 * 109.46789 * 330.00050 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6559 2.0917 1.2406 6 6 1.4468 3.4168 1.1957 7 8 1.5807 4.0145 0.1542 8 6 1.0461 4.1592 2.4444 9 6 0.8756 5.6223 2.1261 10 6 1.9151 6.5001 2.3337 11 6 1.7590 7.8474 2.0476 12 6 0.5606 8.3246 1.5391 13 6 -0.4922 7.4652 1.3236 14 6 -0.3470 6.0962 1.6160 15 6 -1.4217 5.2037 1.3981 16 1 -1.2260 4.1580 1.2118 17 6 -2.7391 5.6751 1.4239 18 7 -3.0065 6.8405 1.9548 19 14 -4.1158 4.6402 0.7006 20 1 -3.5544 3.3738 0.1656 21 1 -5.1120 4.3328 1.7580 22 1 -4.7754 5.3917 -0.3974 23 6 3.5419 1.4442 -0.1238 24 6 4.1870 1.2559 -1.4727 25 8 4.2285 1.5966 0.8579 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8206 4.0404 3.2021 32 1 0.1054 3.7568 2.8203 33 1 2.8545 6.1387 2.7250 34 1 2.5784 8.5300 2.2182 35 1 0.4516 9.3756 1.3152 36 1 -1.4261 7.8396 0.9313 37 1 -3.9195 7.1675 1.9723 38 1 4.3291 2.2273 -1.9463 39 1 5.1534 0.7675 -1.3482 40 1 3.5450 0.6366 -2.0992 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873376587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = -135.330812 kcal Electronic energy + Delta-G solvation = -23287.737352 eV Core-core repulsion = 19838.305823 eV Total energy + Delta-G solvation = -3449.431529 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90643 -40.34579 -39.34854 -37.53726 -35.54579 -34.92100 -33.56886 -31.43136 -31.40585 -29.17991 -27.83302 -26.89336 -23.31373 -23.00457 -22.83571 -21.19211 -20.76685 -19.11801 -18.86037 -17.85157 -17.54461 -17.09388 -16.38990 -16.31725 -16.01032 -15.80037 -15.47161 -15.29282 -15.04934 -14.48166 -14.40293 -13.68144 -13.47273 -13.43370 -13.27957 -13.16627 -13.02727 -12.93752 -12.90197 -12.76213 -12.56084 -12.45875 -12.26730 -12.11901 -11.89744 -11.43676 -11.38388 -11.26631 -11.05872 -10.53993 -9.28504 -9.26024 -8.63431 -6.34843 0.72851 0.89053 1.05851 1.27616 1.36409 1.49426 1.51673 1.77323 2.19145 2.74412 2.87453 3.65257 3.72701 3.84824 3.97507 4.01585 4.20361 4.29711 4.41608 4.44280 4.51845 4.54787 4.58356 4.65969 4.71296 4.75426 4.94412 4.97259 5.07687 5.08441 5.15438 5.30920 5.33710 5.39772 5.48681 5.71549 5.98616 6.10034 6.16849 6.30738 6.36229 6.67409 6.85087 6.93915 7.04412 8.33422 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.005904 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.404852 B = 4741.743840 C = 6290.291205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C 0.021 3.979 4 H 0.108 0.892 5 O -0.345 6.345 6 C 0.466 3.534 7 O -0.527 6.527 8 C -0.043 4.043 9 C -0.203 4.203 10 C -0.088 4.088 11 C -0.241 4.241 12 C -0.111 4.111 13 C -0.189 4.189 14 C 0.100 3.900 15 C -0.483 4.483 16 H 0.071 0.929 17 C 0.038 3.962 18 N -0.822 5.822 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.266 1.266 23 C 0.340 3.660 24 C -0.194 4.194 25 O -0.487 6.487 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.127 0.873 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.288 0.712 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -13.515 -5.734 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.035 4.035 4 H 0.126 0.874 5 O -0.262 6.262 6 C 0.310 3.690 7 O -0.415 6.415 8 C -0.080 4.080 9 C -0.204 4.204 10 C -0.106 4.106 11 C -0.260 4.260 12 C -0.129 4.129 13 C -0.209 4.209 14 C 0.098 3.902 15 C -0.513 4.513 16 H 0.089 0.911 17 C -0.177 4.177 18 N -0.448 5.448 19 Si 0.792 3.208 20 H -0.182 1.182 21 H -0.186 1.186 22 H -0.191 1.191 23 C 0.217 3.783 24 C -0.251 4.251 25 O -0.362 6.362 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.145 0.855 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.704 -13.128 -5.479 15.326 hybrid contribution -0.760 0.292 -0.276 0.859 sum 4.944 -12.836 -5.754 14.911 Atomic orbital electron populations 1.21785 0.94351 1.03327 1.01798 1.21626 0.97391 0.89534 1.05492 1.23761 0.94754 0.97638 0.87315 0.87389 1.86635 1.79039 1.22795 1.37765 1.24403 0.72175 0.80510 0.91869 1.90591 1.48554 1.68811 1.33567 1.19986 1.04085 0.91560 0.92346 1.19417 0.96585 0.93229 1.11178 1.20732 0.96859 0.93810 0.99175 1.20706 0.98204 0.95478 1.11659 1.20989 0.93881 0.98483 0.99533 1.21312 0.98365 0.94626 1.06553 1.17718 0.91960 0.92847 0.87676 1.19653 0.91058 0.95998 1.44564 0.91119 1.26682 1.02289 0.96289 0.92458 1.69872 1.22867 1.19628 1.32410 0.85312 0.77292 0.79164 0.78985 1.18237 1.18612 1.19120 1.25715 0.90915 0.69434 0.92196 1.22327 1.03551 1.05883 0.93331 1.90410 1.66509 1.36730 1.42553 0.92550 0.89502 0.94157 0.85504 0.90328 0.86750 0.87313 0.87012 0.86524 0.87250 0.88113 0.90150 0.87843 0.88089 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.81 71.98 0.71 -2.41 16 2 C -0.10 -1.92 5.63 30.59 0.17 -1.75 16 3 C 0.02 0.58 2.27 29.85 0.07 0.64 16 4 H 0.11 3.04 7.16 -2.38 -0.02 3.02 16 5 O -0.35 -12.34 9.04 -45.28 -0.41 -12.75 16 6 C 0.47 19.56 7.56 71.23 0.54 20.10 16 7 O -0.53 -25.00 15.25 21.97 0.34 -24.66 16 8 C -0.04 -1.79 5.29 29.10 0.15 -1.63 16 9 C -0.20 -9.97 4.43 -19.41 -0.09 -10.05 16 10 C -0.09 -4.05 9.66 22.22 0.21 -3.83 16 11 C -0.24 -11.01 10.05 22.46 0.23 -10.78 16 12 C -0.11 -5.37 10.02 22.22 0.22 -5.15 16 13 C -0.19 -10.31 8.68 22.73 0.20 -10.11 16 14 C 0.10 5.48 5.56 -21.29 -0.12 5.36 16 15 C -0.48 -25.84 8.14 23.46 0.19 -25.65 16 16 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 17 C 0.04 1.91 5.16 85.26 0.44 2.35 16 18 N -0.82 -42.87 10.97 21.82 0.24 -42.63 16 19 Si 0.97 38.13 29.59 68.60 2.03 40.16 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 C 0.34 9.02 6.50 29.10 0.19 9.21 16 24 C -0.19 -3.04 10.25 71.24 0.73 -2.31 16 25 O -0.49 -17.01 17.36 16.53 0.29 -16.72 16 26 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.04 1.02 7.82 -2.39 -0.02 1.00 16 29 H 0.13 1.31 7.95 -2.39 -0.02 1.29 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 4.12 8.05 -2.39 -0.02 4.10 16 32 H 0.11 4.50 7.06 -2.39 -0.02 4.48 16 33 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.10 5.70 6.22 -2.91 -0.02 5.68 16 37 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.12 1.03 7.93 -2.39 -0.02 1.01 16 Total: -1.00 -70.15 344.59 7.36 -62.79 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 1.04 Total: 29.82 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 3.84 Total: -36.01 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.24 Total: -42.63 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: 0.21 Total: -54.13 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -70.15 7.36 -62.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873376587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.542 kcal (2) G-P(sol) polarization free energy of solvation -70.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds