Wall clock time and date at job start Tue Mar 31 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20755 * 120.00114 * 2 1 4 4 C 1.50697 * 120.00022 * 180.02562 * 2 1 3 5 5 H 1.09006 * 109.47333 * 45.00081 * 4 2 1 6 6 C 1.53005 * 109.47317 * 284.99945 * 4 2 1 7 7 C 1.50700 * 109.47135 * 174.99905 * 6 4 2 8 8 C 1.38231 * 120.00210 * 269.72401 * 7 6 4 9 9 C 1.38230 * 120.00151 * 179.77082 * 8 7 6 10 10 C 1.38238 * 119.99869 * 0.50485 * 9 8 7 11 11 C 1.38227 * 119.99844 * 359.75000 * 10 9 8 12 12 C 1.38231 * 119.99511 * 90.00536 * 7 6 4 13 13 O 1.45198 * 109.47174 * 164.99766 * 4 2 1 14 14 C 1.34230 * 117.00173 * 269.99872 * 13 4 2 15 15 O 1.20822 * 120.00010 * 359.97438 * 14 13 4 16 16 C 1.50706 * 119.99763 * 180.02562 * 14 13 4 17 17 C 1.53002 * 109.46925 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47300 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99822 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00339 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00355 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47174 * 89.99890 * 22 20 18 24 24 H 1.48506 * 109.46994 * 210.00195 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99640 * 22 20 18 26 26 H 1.08998 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47143 * 299.99946 * 1 2 3 28 28 H 1.08998 * 109.47373 * 60.00330 * 1 2 3 29 29 H 1.08996 * 109.46599 * 295.00371 * 6 4 2 30 30 H 1.08995 * 109.47007 * 54.99842 * 6 4 2 31 31 H 1.08004 * 119.99496 * 0.02562 * 8 7 6 32 32 H 1.07996 * 120.00079 * 180.23516 * 9 8 7 33 33 H 1.08001 * 119.99991 * 179.72576 * 10 9 8 34 34 H 1.08003 * 119.99994 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.00561 * 359.97438 * 12 7 6 36 36 H 1.09000 * 109.47318 * 299.99486 * 16 14 13 37 37 H 1.09000 * 109.47161 * 60.00117 * 16 14 13 38 38 H 1.09004 * 109.46930 * 299.99901 * 17 16 14 39 39 H 1.09004 * 109.47059 * 59.99503 * 17 16 14 40 40 H 0.96991 * 119.99891 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8128 -1.9828 -0.7276 6 6 2.1922 -1.9341 1.3925 7 6 2.8391 -3.2948 1.3615 8 6 2.0802 -4.4147 1.0777 9 6 2.6745 -5.6623 1.0446 10 6 4.0259 -5.7912 1.3057 11 6 4.7838 -4.6719 1.5947 12 6 4.1904 -3.4236 1.6227 13 8 3.6476 -1.0629 -0.3548 14 6 3.9617 -1.1156 -1.6588 15 8 3.1060 -1.3565 -2.4771 16 6 5.3819 -0.8754 -2.1020 17 6 5.4674 -0.9915 -3.6252 18 6 6.8876 -0.7519 -4.0685 19 1 7.6529 -0.5386 -3.3369 20 6 7.2103 -0.8062 -5.4078 21 7 8.4496 -0.5966 -5.7947 22 14 5.8868 -1.1759 -6.6732 23 1 5.2682 0.0951 -7.1284 24 1 6.4936 -1.8749 -7.8344 25 1 4.8464 -2.0420 -6.0626 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.7178 -1.2979 2.1045 30 1 1.1499 -2.0341 1.6953 31 1 1.0236 -4.3144 0.8777 32 1 2.0823 -6.5368 0.8191 33 1 4.4894 -6.7664 1.2842 34 1 5.8395 -4.7727 1.7991 35 1 4.7826 -2.5492 1.8486 36 1 5.6940 0.1232 -1.7962 37 1 6.0360 -1.6169 -1.6434 38 1 5.1551 -1.9900 -3.9315 39 1 4.8132 -0.2497 -4.0835 40 1 8.6767 -0.6351 -6.7369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873393731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:17 Heat of formation + Delta-G solvation = -112.533781 kcal Electronic energy + Delta-G solvation = -22749.098048 eV Core-core repulsion = 19300.655073 eV Total energy + Delta-G solvation = -3448.442975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76041 -39.28108 -39.01323 -36.32960 -33.86648 -33.59426 -31.42847 -31.03279 -30.96016 -28.79626 -26.50681 -24.69132 -22.72719 -22.08912 -21.30127 -20.02237 -19.67343 -17.72682 -17.16374 -16.75985 -16.64521 -15.89672 -15.35239 -15.14940 -15.07625 -14.92857 -14.61046 -14.13835 -13.54645 -13.30742 -13.25870 -13.11834 -12.95004 -12.65615 -12.53729 -12.47170 -12.22494 -11.60968 -11.41181 -11.30662 -11.22869 -11.08999 -11.00542 -10.32281 -10.16829 -9.94595 -9.71691 -9.62026 -9.24924 -9.01607 -8.82886 -8.54682 -6.06210 -4.05844 1.17259 1.30592 1.71907 2.64132 2.82911 3.34766 3.41349 3.50462 3.61357 3.79704 4.47006 4.49965 4.64114 4.68550 4.78220 4.89776 4.90647 5.00117 5.04586 5.14010 5.17261 5.28542 5.36763 5.41592 5.49884 5.58137 5.65161 5.88069 5.93925 6.00676 6.03193 6.33121 6.41136 6.44074 6.48893 6.73495 6.88821 7.23445 7.26233 7.31826 7.71525 8.16762 8.48106 8.96212 9.55631 11.06463 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.004607 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.096430 B = 6076.871785 C = 7332.031556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.340 3.660 3 O -0.434 6.434 4 C 0.041 3.959 5 H 0.112 0.888 6 C -0.068 4.068 7 C -0.089 4.089 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.118 4.118 12 C -0.098 4.098 13 O -0.336 6.336 14 C 0.460 3.540 15 O -0.513 6.513 16 C -0.094 4.094 17 C -0.001 4.001 18 C -0.526 4.526 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.900 5.900 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.262 1.262 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 -7.477 18.286 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.213 3.787 3 O -0.305 6.305 4 C -0.015 4.015 5 H 0.130 0.870 6 C -0.105 4.105 7 C -0.089 4.089 8 C -0.135 4.135 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.136 4.136 12 C -0.116 4.116 13 O -0.253 6.253 14 C 0.304 3.696 15 O -0.400 6.400 16 C -0.132 4.132 17 C -0.039 4.039 18 C -0.564 4.564 19 H 0.094 0.906 20 C -0.130 4.130 21 N -0.539 5.539 22 Si 0.703 3.297 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.186 1.186 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.123 -6.974 17.892 25.074 hybrid contribution -0.746 -0.315 -0.928 1.231 sum -16.869 -7.289 16.964 25.009 Atomic orbital electron populations 1.22237 0.93324 1.04912 1.05218 1.25055 0.92405 0.90130 0.71142 1.90454 1.71829 1.34469 1.33793 1.23169 0.82591 0.96776 0.98990 0.87026 1.20565 1.02221 0.93685 0.94022 1.19632 0.94362 0.94040 1.00832 1.21026 0.99716 0.92359 1.00384 1.21106 0.95209 0.97322 1.00378 1.21191 0.94250 0.98790 0.99588 1.21214 1.00047 0.92619 0.99744 1.21145 0.94150 0.97752 0.98593 1.86698 1.27440 1.82196 1.28994 1.24839 0.93583 0.71721 0.79429 1.90593 1.51113 1.44915 1.53364 1.21546 0.86442 1.04429 1.00739 1.19478 0.98196 0.97901 0.88277 1.21020 0.92622 1.49161 0.93556 0.90621 1.24938 0.95281 0.94354 0.98441 1.69900 1.17821 1.49806 1.16355 0.86821 0.82519 0.79268 0.81100 1.20148 1.21282 1.18635 0.89805 0.88591 0.88475 0.89154 0.88428 0.86118 0.86132 0.86142 0.85822 0.85509 0.88199 0.88272 0.95635 0.96107 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 10.28 36.00 0.37 -1.19 16 2 C 0.34 4.29 6.53 -29.04 -0.19 4.10 16 3 O -0.43 -7.30 17.31 -13.23 -0.23 -7.53 16 4 C 0.04 0.53 2.19 -27.88 -0.06 0.46 16 5 H 0.11 1.44 7.16 -51.93 -0.37 1.07 16 6 C -0.07 -0.62 5.04 -27.88 -0.14 -0.77 16 7 C -0.09 -0.94 4.97 -104.63 -0.52 -1.46 16 8 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 9 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 11 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 12 C -0.10 -1.12 9.40 -39.58 -0.37 -1.49 16 13 O -0.34 -5.52 8.96 -45.78 -0.41 -5.93 16 14 C 0.46 9.00 7.92 36.01 0.29 9.28 16 15 O -0.51 -11.12 15.20 -18.75 -0.28 -11.41 16 16 C -0.09 -1.93 5.75 -27.88 -0.16 -2.09 16 17 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 18 C -0.53 -15.11 9.66 -34.44 -0.33 -15.44 16 19 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 22 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 26 H 0.08 0.44 8.00 -51.93 -0.42 0.03 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.10 0.58 8.04 -51.93 -0.42 0.16 16 31 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 37 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 38 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 39 H 0.02 0.54 7.53 -51.93 -0.39 0.14 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -35.50 349.16 -8.22 -43.73 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.78 Total: -1.74 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.89 Total: -13.07 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.92 Total: -24.87 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.50 -8.22 -43.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873393731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.807 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds