Wall clock time and date at job start Tue Mar 31 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20755 * 120.00114 * 2 1 4 4 C 1.50697 * 120.00022 * 180.02562 * 2 1 3 5 5 H 1.09006 * 109.47333 * 45.00081 * 4 2 1 6 6 C 1.53005 * 109.47317 * 284.99945 * 4 2 1 7 7 C 1.50700 * 109.47135 * 174.99905 * 6 4 2 8 8 C 1.38231 * 120.00210 * 269.72401 * 7 6 4 9 9 C 1.38230 * 120.00151 * 179.77082 * 8 7 6 10 10 C 1.38238 * 119.99869 * 0.50485 * 9 8 7 11 11 C 1.38227 * 119.99844 * 359.75000 * 10 9 8 12 12 C 1.38231 * 119.99511 * 90.00536 * 7 6 4 13 13 O 1.45198 * 109.47174 * 164.99766 * 4 2 1 14 14 C 1.34230 * 117.00173 * 269.99872 * 13 4 2 15 15 O 1.20822 * 120.00010 * 359.97438 * 14 13 4 16 16 C 1.50706 * 119.99763 * 180.02562 * 14 13 4 17 17 C 1.53002 * 109.46925 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47300 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99822 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00339 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00355 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47174 * 89.99890 * 22 20 18 24 24 H 1.48506 * 109.46994 * 210.00195 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99640 * 22 20 18 26 26 H 1.08998 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47143 * 299.99946 * 1 2 3 28 28 H 1.08998 * 109.47373 * 60.00330 * 1 2 3 29 29 H 1.08996 * 109.46599 * 295.00371 * 6 4 2 30 30 H 1.08995 * 109.47007 * 54.99842 * 6 4 2 31 31 H 1.08004 * 119.99496 * 0.02562 * 8 7 6 32 32 H 1.07996 * 120.00079 * 180.23516 * 9 8 7 33 33 H 1.08001 * 119.99991 * 179.72576 * 10 9 8 34 34 H 1.08003 * 119.99994 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.00561 * 359.97438 * 12 7 6 36 36 H 1.09000 * 109.47318 * 299.99486 * 16 14 13 37 37 H 1.09000 * 109.47161 * 60.00117 * 16 14 13 38 38 H 1.09004 * 109.46930 * 299.99901 * 17 16 14 39 39 H 1.09004 * 109.47059 * 59.99503 * 17 16 14 40 40 H 0.96991 * 119.99891 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.8128 -1.9828 -0.7276 6 6 2.1922 -1.9341 1.3925 7 6 2.8391 -3.2948 1.3615 8 6 2.0802 -4.4147 1.0777 9 6 2.6745 -5.6623 1.0446 10 6 4.0259 -5.7912 1.3057 11 6 4.7838 -4.6719 1.5947 12 6 4.1904 -3.4236 1.6227 13 8 3.6476 -1.0629 -0.3548 14 6 3.9617 -1.1156 -1.6588 15 8 3.1060 -1.3565 -2.4771 16 6 5.3819 -0.8754 -2.1020 17 6 5.4674 -0.9915 -3.6252 18 6 6.8876 -0.7519 -4.0685 19 1 7.6529 -0.5386 -3.3369 20 6 7.2103 -0.8062 -5.4078 21 7 8.4496 -0.5966 -5.7947 22 14 5.8868 -1.1759 -6.6732 23 1 5.2682 0.0951 -7.1284 24 1 6.4936 -1.8749 -7.8344 25 1 4.8464 -2.0420 -6.0626 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.7178 -1.2979 2.1045 30 1 1.1499 -2.0341 1.6953 31 1 1.0236 -4.3144 0.8777 32 1 2.0823 -6.5368 0.8191 33 1 4.4894 -6.7664 1.2842 34 1 5.8395 -4.7727 1.7991 35 1 4.7826 -2.5492 1.8486 36 1 5.6940 0.1232 -1.7962 37 1 6.0360 -1.6169 -1.6434 38 1 5.1551 -1.9900 -3.9315 39 1 4.8132 -0.2497 -4.0835 40 1 8.6767 -0.6351 -6.7369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873393731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:16 Heat of formation + Delta-G solvation = -132.034864 kcal Electronic energy + Delta-G solvation = -22749.943678 eV Core-core repulsion = 19300.655073 eV Total energy + Delta-G solvation = -3449.288606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.01730 -40.34593 -39.97479 -37.68393 -35.68130 -34.77496 -33.45419 -31.83164 -31.72165 -29.67895 -28.33789 -25.63863 -23.91622 -23.42316 -22.07354 -21.64430 -20.79000 -19.47569 -18.57894 -18.05757 -17.66635 -17.18310 -16.56468 -16.30959 -16.13045 -15.96492 -15.85558 -15.65791 -14.84999 -14.76174 -14.41958 -14.26671 -14.00315 -13.80711 -13.46548 -13.35782 -13.20379 -13.05166 -12.97497 -12.59512 -12.44729 -12.27268 -12.07758 -12.01332 -11.85211 -11.81907 -11.51797 -11.43137 -10.81925 -10.63234 -9.77904 -9.60959 -8.34501 -6.39212 0.39275 0.54162 0.77117 1.11962 1.32148 1.33380 1.47410 1.56048 2.32095 2.76416 2.94838 3.00515 3.63252 3.79535 3.84798 3.97477 4.04335 4.09680 4.20106 4.24219 4.30458 4.33429 4.47216 4.56583 4.60584 4.65051 4.74589 4.78637 4.84350 5.06405 5.14648 5.18600 5.20474 5.27477 5.30053 5.54178 5.59052 5.66708 5.70834 6.15367 6.18068 6.29919 6.64176 6.73027 7.25862 8.81245 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013342 B = 0.004607 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.096430 B = 6076.871785 C = 7332.031556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.340 3.660 3 O -0.487 6.487 4 C 0.030 3.970 5 H 0.115 0.885 6 C -0.060 4.060 7 C -0.101 4.101 8 C -0.120 4.120 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.121 4.121 13 O -0.337 6.337 14 C 0.468 3.532 15 O -0.537 6.537 16 C -0.093 4.093 17 C 0.006 3.994 18 C -0.534 4.534 19 H 0.049 0.951 20 C 0.017 3.983 21 N -0.941 5.941 22 Si 0.939 3.061 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.257 1.257 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.019 0.981 39 H 0.013 0.987 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.324 -8.602 18.896 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.217 3.783 3 O -0.362 6.362 4 C -0.025 4.025 5 H 0.133 0.867 6 C -0.096 4.096 7 C -0.101 4.101 8 C -0.138 4.138 9 C -0.149 4.149 10 C -0.149 4.149 11 C -0.154 4.154 12 C -0.139 4.139 13 O -0.253 6.253 14 C 0.313 3.687 15 O -0.427 6.427 16 C -0.130 4.130 17 C -0.032 4.032 18 C -0.572 4.572 19 H 0.068 0.932 20 C -0.182 4.182 21 N -0.581 5.581 22 Si 0.762 3.238 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.181 1.181 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.171 -8.113 18.538 27.875 hybrid contribution 0.221 -0.001 -0.996 1.021 sum -18.949 -8.115 17.542 27.067 Atomic orbital electron populations 1.22308 0.89019 1.07476 1.06212 1.25748 0.94675 0.88960 0.68945 1.90449 1.73239 1.35910 1.36610 1.23716 0.80262 0.97605 1.00957 0.86698 1.20664 1.04768 0.92546 0.91652 1.19834 0.94152 0.95070 1.01066 1.21400 1.01118 0.91913 0.99379 1.21480 0.95261 0.98370 0.99742 1.21490 0.94831 0.99276 0.99335 1.21425 1.00719 0.92940 1.00327 1.21300 0.95023 0.97864 0.99712 1.86644 1.30405 1.81535 1.26758 1.24331 0.92678 0.71306 0.80339 1.90572 1.51591 1.46297 1.54259 1.21330 0.88276 1.05387 0.98025 1.19289 0.95499 0.97033 0.91345 1.21303 0.93930 1.48582 0.93335 0.93237 1.25793 0.97406 0.94277 1.00677 1.70016 1.19815 1.51131 1.17161 0.85828 0.79767 0.79461 0.78699 1.19331 1.20060 1.18141 0.86561 0.86243 0.88514 0.89261 0.84097 0.83280 0.83937 0.84600 0.85246 0.86150 0.87617 0.86918 0.96214 0.96875 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 10.28 71.24 0.73 -1.58 16 2 C 0.34 7.94 6.53 29.10 0.19 8.13 16 3 O -0.49 -16.16 17.31 16.95 0.29 -15.87 16 4 C 0.03 0.71 2.19 29.85 0.07 0.78 16 5 H 0.12 2.68 7.16 -2.38 -0.02 2.67 16 6 C -0.06 -0.94 5.04 29.85 0.15 -0.79 16 7 C -0.10 -1.95 4.97 -19.87 -0.10 -2.05 16 8 C -0.12 -1.99 9.70 22.27 0.22 -1.78 16 9 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 10 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 11 C -0.14 -2.89 10.05 22.27 0.22 -2.67 16 12 C -0.12 -2.70 9.40 22.27 0.21 -2.49 16 13 O -0.34 -10.89 8.96 -45.17 -0.40 -11.29 16 14 C 0.47 18.14 7.92 71.24 0.56 18.71 16 15 O -0.54 -22.93 15.20 21.98 0.33 -22.59 16 16 C -0.09 -3.83 5.75 29.85 0.17 -3.66 16 17 C 0.01 0.30 3.33 29.85 0.10 0.40 16 18 C -0.53 -31.23 9.66 25.60 0.25 -30.98 16 19 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 20 C 0.02 0.99 5.47 84.65 0.46 1.45 16 21 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 22 Si 0.94 46.30 27.47 68.60 1.88 48.18 16 23 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.26 -12.42 6.54 99.48 0.65 -11.76 16 26 H 0.12 0.63 8.00 -2.39 -0.02 0.61 16 27 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 30 H 0.14 0.99 8.04 -2.39 -0.02 0.98 16 31 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 37 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 38 H 0.02 1.01 7.16 -2.38 -0.02 0.99 16 39 H 0.01 0.67 7.53 -2.39 -0.02 0.65 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -78.26 349.16 7.05 -71.20 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.97 Total: 10.04 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.68 Total: -20.80 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.30 Total: -58.88 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: 0.22 Total: -49.75 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.88 Total: 48.18 kcal Total: -78.26 7.05 -71.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873393731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.833 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds