Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.43323 * 2 1 4 4 C 1.54096 * 110.48768 * 122.68364 * 2 1 3 5 5 O 1.43740 * 107.29612 * 116.64718 * 4 2 1 6 6 C 1.44389 * 106.97089 * 26.51817 * 5 4 2 7 7 H 1.08994 * 110.75737 * 78.50577 * 6 5 4 8 8 C 1.50700 * 110.61606 * 201.44110 * 6 5 4 9 9 O 1.20835 * 119.99939 * 359.06235 * 8 6 5 10 10 O 1.34225 * 120.00051 * 179.07011 * 8 6 5 11 11 C 1.45203 * 117.00165 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.47356 * 179.97438 * 11 10 8 13 13 C 1.38634 * 119.74770 * 269.72512 * 12 11 10 14 14 C 1.37618 * 120.24897 * 179.76013 * 13 12 11 15 15 C 1.40722 * 119.74070 * 0.49465 * 14 13 12 16 16 C 1.41397 * 120.24228 * 179.79070 * 15 14 13 17 17 H 1.08002 * 119.99819 * 204.37260 * 16 15 14 18 18 C 1.39944 * 120.00403 * 24.36122 * 16 15 14 19 19 N 1.30828 * 120.00036 * 17.88421 * 18 16 15 20 20 Si 1.86794 * 120.00492 * 197.88295 * 18 16 15 21 21 H 1.48500 * 109.46950 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47504 * 120.00006 * 20 18 16 23 23 H 1.48496 * 109.47504 * 240.00477 * 20 18 16 24 24 C 1.40707 * 119.51367 * 359.75954 * 15 14 13 25 25 C 1.37624 * 119.74620 * 0.02562 * 24 15 14 26 26 C 1.54802 * 110.49027 * 237.45391 * 2 1 3 27 27 H 1.08996 * 109.46787 * 182.54620 * 1 2 3 28 28 H 1.09000 * 109.46912 * 302.54835 * 1 2 3 29 29 H 1.09005 * 109.47029 * 62.55095 * 1 2 3 30 30 H 1.09000 * 109.88095 * 236.07486 * 4 2 1 31 31 H 1.08998 * 109.87867 * 357.22157 * 4 2 1 32 32 H 1.09003 * 109.47484 * 300.00143 * 11 10 8 33 33 H 1.09003 * 109.46858 * 59.99525 * 11 10 8 34 34 H 1.08006 * 119.88034 * 0.02562 * 13 12 11 35 35 H 1.07998 * 120.13110 * 180.28037 * 14 13 12 36 36 H 0.97001 * 120.00410 * 180.02562 * 19 18 16 37 37 H 1.07998 * 120.12886 * 180.02562 * 24 15 14 38 38 H 1.07993 * 119.87572 * 179.97438 * 25 24 15 39 39 H 1.08996 * 110.91096 * 102.24388 * 26 2 1 40 40 H 1.09006 * 110.93785 * 338.65042 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0694 -0.7795 1.2149 5 8 2.7956 -1.9117 0.7082 6 6 3.2661 -1.5552 -0.6095 7 1 4.1465 -0.9158 -0.5454 8 6 3.5675 -2.7910 -1.4177 9 8 3.4188 -3.8851 -0.9268 10 8 4.0012 -2.6763 -2.6828 11 6 4.2721 -3.9088 -3.4010 12 6 4.7454 -3.5845 -4.7945 13 6 3.8240 -3.4641 -5.8233 14 6 4.2444 -3.1633 -7.0988 15 6 5.6163 -2.9883 -7.3586 16 6 6.0603 -2.6835 -8.6659 17 1 7.0690 -2.9283 -8.9645 18 6 5.1928 -2.0647 -9.5732 19 7 4.1185 -1.4566 -9.1401 20 14 5.5688 -2.1071 -11.4024 21 1 6.8336 -2.8509 -11.6307 22 1 4.4592 -2.7843 -12.1203 23 1 5.7128 -0.7192 -11.9105 24 6 6.5429 -3.1182 -6.3076 25 6 6.0994 -3.4150 -5.0391 26 6 2.0719 -0.7801 -1.2224 27 1 -0.3633 -1.0266 0.0457 28 1 -0.3633 0.5529 0.8663 29 1 -0.3633 0.4737 -0.9120 30 1 2.7350 -0.1430 1.7979 31 1 1.2401 -1.1186 1.8356 32 1 5.0437 -4.4728 -2.8769 33 1 3.3611 -4.5047 -3.4565 34 1 2.7719 -3.6025 -5.6223 35 1 3.5246 -3.0655 -7.8979 36 1 3.5169 -1.0281 -9.7690 37 1 7.5981 -2.9855 -6.4958 38 1 6.8088 -3.5156 -4.2310 39 1 2.4104 -0.0967 -2.0011 40 1 1.3201 -1.4674 -1.6103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885575939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = -124.164524 kcal Electronic energy + Delta-G solvation = -22207.295719 eV Core-core repulsion = 18758.348397 eV Total energy + Delta-G solvation = -3448.947322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56135 -39.17409 -37.64925 -35.99858 -33.90677 -33.77021 -31.18612 -30.35833 -29.38425 -27.24815 -26.59330 -24.60307 -23.42825 -21.12369 -20.95155 -20.39326 -20.05959 -17.74090 -17.41057 -16.89119 -16.51492 -15.86972 -15.44697 -15.30514 -14.72603 -14.27714 -14.11738 -13.79719 -13.57690 -13.09227 -12.93642 -12.71817 -12.48005 -12.30405 -12.05292 -11.80852 -11.75268 -11.44105 -11.25388 -11.19869 -11.03171 -11.00522 -10.84364 -10.45996 -10.20118 -10.16260 -9.87924 -9.69233 -9.49182 -9.24363 -7.58518 -7.47269 -6.89011 -4.48501 2.30232 2.39010 2.82178 2.98798 3.01696 3.06610 3.17854 3.83942 3.87930 4.22497 4.44154 4.51002 4.60951 4.82690 4.90123 5.09083 5.18351 5.34103 5.42293 5.47333 5.59271 5.61652 5.65577 5.69036 5.75326 5.77754 5.94618 6.05207 6.23579 6.29550 6.53689 6.81319 6.85902 6.95479 7.16318 7.24470 7.49749 7.71968 7.93994 7.98970 8.06538 8.17201 8.51992 8.76581 8.84682 10.04692 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.003061 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.310345 B = 9143.664073 C = 9895.715505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.351 6.351 6 C 0.084 3.916 7 H 0.108 0.892 8 C 0.460 3.540 9 O -0.501 6.501 10 O -0.346 6.346 11 C 0.137 3.863 12 C -0.236 4.236 13 C -0.075 4.075 14 C -0.170 4.170 15 C 0.118 3.882 16 C -0.455 4.455 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.230 4.230 25 C -0.063 4.063 26 C -0.137 4.137 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.282 0.718 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 4.670 12.221 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 H 0.108 0.892 4 C -0.028 4.028 5 O -0.270 6.270 6 C 0.025 3.975 7 H 0.126 0.874 8 C 0.302 3.698 9 O -0.389 6.389 10 O -0.263 6.263 11 C 0.065 3.935 12 C -0.237 4.237 13 C -0.094 4.094 14 C -0.190 4.190 15 C 0.116 3.884 16 C -0.484 4.484 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.409 5.409 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.250 4.250 25 C -0.081 4.081 26 C -0.175 4.175 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.660 4.255 12.352 14.238 hybrid contribution 0.079 0.212 -0.854 0.883 sum -5.581 4.467 11.498 13.539 Atomic orbital electron populations 1.21833 0.93599 1.02450 1.02263 1.22569 0.97460 1.00254 0.94341 0.89240 1.23371 0.95860 0.87696 0.95910 1.88989 1.72091 1.37309 1.28634 1.22523 0.99411 0.91896 0.83633 0.87406 1.23044 0.74461 0.90393 0.81934 1.90648 1.48132 1.28699 1.71403 1.86697 1.75572 1.40036 1.23976 1.21774 0.99584 0.82334 0.89819 1.18665 0.93791 1.19988 0.91299 1.20539 0.96516 0.98766 0.93544 1.21293 0.96662 1.05459 0.95554 1.17694 0.91643 0.86802 0.92307 1.19714 0.99322 1.33572 0.95778 0.90116 1.25976 0.94068 0.92701 1.01668 1.69835 1.10843 1.23051 1.37175 0.86234 0.79900 0.78888 0.81604 1.18279 1.19574 1.19876 1.20966 0.98214 1.13008 0.92767 1.20400 0.93819 0.97934 0.95994 1.23180 0.96573 0.99428 0.98302 0.92114 0.92229 0.91928 0.91857 0.89239 0.91976 0.91956 0.89321 0.86228 0.90680 0.88693 0.89262 0.88290 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.92 37.16 0.33 -0.73 16 2 C -0.13 -1.07 3.64 -89.10 -0.32 -1.39 16 3 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 4 C 0.05 0.45 7.37 37.73 0.28 0.73 16 5 O -0.35 -4.90 10.80 -54.35 -0.59 -5.48 16 6 C 0.08 1.12 3.88 -26.83 -0.10 1.01 16 7 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 8 C 0.46 7.92 7.33 36.01 0.26 8.19 16 9 O -0.50 -10.03 16.31 -25.25 -0.41 -10.45 16 10 O -0.35 -6.44 10.20 -39.24 -0.40 -6.84 16 11 C 0.14 2.63 5.58 36.00 0.20 2.84 16 12 C -0.24 -5.19 5.54 -104.33 -0.58 -5.77 16 13 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 14 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 15 C 0.12 3.07 5.58 -106.82 -0.60 2.48 16 16 C -0.46 -11.68 9.05 -37.74 -0.34 -12.02 16 17 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 19 N -0.78 -19.56 10.95 55.55 0.61 -18.95 16 20 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 25 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 26 C -0.14 -1.50 6.13 -24.73 -0.15 -1.65 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.74 7.69 -51.93 -0.40 0.34 16 32 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 35 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 36 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -29.27 340.31 -9.03 -38.30 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.74 Total: 4.46 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.60 Total: -19.07 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.61 Total: -18.95 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.40 Total: -22.77 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.27 -9.03 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885575939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.865 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds