Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.43323 * 2 1 4 4 C 1.54096 * 110.48768 * 122.68364 * 2 1 3 5 5 O 1.43740 * 107.29612 * 116.64718 * 4 2 1 6 6 C 1.44389 * 106.97089 * 26.51817 * 5 4 2 7 7 H 1.08994 * 110.75737 * 78.50577 * 6 5 4 8 8 C 1.50700 * 110.61606 * 201.44110 * 6 5 4 9 9 O 1.20835 * 119.99939 * 359.06235 * 8 6 5 10 10 O 1.34225 * 120.00051 * 179.07011 * 8 6 5 11 11 C 1.45203 * 117.00165 * 179.97438 * 10 8 6 12 12 C 1.50696 * 109.47356 * 179.97438 * 11 10 8 13 13 C 1.38634 * 119.74770 * 269.72512 * 12 11 10 14 14 C 1.37618 * 120.24897 * 179.76013 * 13 12 11 15 15 C 1.40722 * 119.74070 * 0.49465 * 14 13 12 16 16 C 1.41397 * 120.24228 * 179.79070 * 15 14 13 17 17 H 1.08002 * 119.99819 * 204.37260 * 16 15 14 18 18 C 1.39944 * 120.00403 * 24.36122 * 16 15 14 19 19 N 1.30828 * 120.00036 * 17.88421 * 18 16 15 20 20 Si 1.86794 * 120.00492 * 197.88295 * 18 16 15 21 21 H 1.48500 * 109.46950 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47504 * 120.00006 * 20 18 16 23 23 H 1.48496 * 109.47504 * 240.00477 * 20 18 16 24 24 C 1.40707 * 119.51367 * 359.75954 * 15 14 13 25 25 C 1.37624 * 119.74620 * 0.02562 * 24 15 14 26 26 C 1.54802 * 110.49027 * 237.45391 * 2 1 3 27 27 H 1.08996 * 109.46787 * 182.54620 * 1 2 3 28 28 H 1.09000 * 109.46912 * 302.54835 * 1 2 3 29 29 H 1.09005 * 109.47029 * 62.55095 * 1 2 3 30 30 H 1.09000 * 109.88095 * 236.07486 * 4 2 1 31 31 H 1.08998 * 109.87867 * 357.22157 * 4 2 1 32 32 H 1.09003 * 109.47484 * 300.00143 * 11 10 8 33 33 H 1.09003 * 109.46858 * 59.99525 * 11 10 8 34 34 H 1.08006 * 119.88034 * 0.02562 * 13 12 11 35 35 H 1.07998 * 120.13110 * 180.28037 * 14 13 12 36 36 H 0.97001 * 120.00410 * 180.02562 * 19 18 16 37 37 H 1.07998 * 120.12886 * 180.02562 * 24 15 14 38 38 H 1.07993 * 119.87572 * 179.97438 * 25 24 15 39 39 H 1.08996 * 110.91096 * 102.24388 * 26 2 1 40 40 H 1.09006 * 110.93785 * 338.65042 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0694 -0.7795 1.2149 5 8 2.7956 -1.9117 0.7082 6 6 3.2661 -1.5552 -0.6095 7 1 4.1465 -0.9158 -0.5454 8 6 3.5675 -2.7910 -1.4177 9 8 3.4188 -3.8851 -0.9268 10 8 4.0012 -2.6763 -2.6828 11 6 4.2721 -3.9088 -3.4010 12 6 4.7454 -3.5845 -4.7945 13 6 3.8240 -3.4641 -5.8233 14 6 4.2444 -3.1633 -7.0988 15 6 5.6163 -2.9883 -7.3586 16 6 6.0603 -2.6835 -8.6659 17 1 7.0690 -2.9283 -8.9645 18 6 5.1928 -2.0647 -9.5732 19 7 4.1185 -1.4566 -9.1401 20 14 5.5688 -2.1071 -11.4024 21 1 6.8336 -2.8509 -11.6307 22 1 4.4592 -2.7843 -12.1203 23 1 5.7128 -0.7192 -11.9105 24 6 6.5429 -3.1182 -6.3076 25 6 6.0994 -3.4150 -5.0391 26 6 2.0719 -0.7801 -1.2224 27 1 -0.3633 -1.0266 0.0457 28 1 -0.3633 0.5529 0.8663 29 1 -0.3633 0.4737 -0.9120 30 1 2.7350 -0.1430 1.7979 31 1 1.2401 -1.1186 1.8356 32 1 5.0437 -4.4728 -2.8769 33 1 3.3611 -4.5047 -3.4565 34 1 2.7719 -3.6025 -5.6223 35 1 3.5246 -3.0655 -7.8979 36 1 3.5169 -1.0281 -9.7690 37 1 7.5981 -2.9855 -6.4958 38 1 6.8088 -3.5156 -4.2310 39 1 2.4104 -0.0967 -2.0011 40 1 1.3201 -1.4674 -1.6103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885575939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = -138.255235 kcal Electronic energy + Delta-G solvation = -22207.906738 eV Core-core repulsion = 18758.348397 eV Total energy + Delta-G solvation = -3449.558341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80984 -40.29546 -39.41772 -37.50843 -35.70011 -34.56934 -32.75760 -31.57468 -31.22188 -28.93321 -27.29304 -26.00569 -24.81708 -22.96482 -22.10517 -21.79467 -21.31119 -19.28083 -18.96677 -17.98714 -17.86851 -17.23433 -17.03559 -16.35166 -16.07328 -15.68740 -15.54401 -15.17057 -14.86056 -14.42032 -14.08022 -13.86438 -13.84142 -13.67089 -13.54109 -13.49840 -12.94824 -12.81092 -12.68270 -12.60254 -12.21827 -12.08731 -11.99259 -11.74725 -11.70707 -11.58353 -11.35702 -11.29493 -11.04561 -10.76702 -9.44875 -9.34280 -8.69476 -6.40195 0.67561 1.03711 1.10516 1.35617 1.40288 1.54498 1.67226 2.19602 2.66677 2.96419 3.37072 3.55824 3.74416 3.77310 3.93681 4.02755 4.06124 4.07879 4.16093 4.45830 4.48307 4.53809 4.55319 4.64598 4.72568 4.82756 4.89656 5.00104 5.04076 5.11582 5.14177 5.29283 5.34469 5.37265 5.40568 5.64394 5.69378 5.87168 6.05121 6.13421 6.31093 6.63673 6.66768 6.87990 6.96286 8.27267 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.003061 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.310345 B = 9143.664073 C = 9895.715505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 H 0.113 0.887 4 C 0.042 3.958 5 O -0.382 6.382 6 C 0.086 3.914 7 H 0.134 0.866 8 C 0.460 3.540 9 O -0.533 6.533 10 O -0.352 6.352 11 C 0.140 3.860 12 C -0.231 4.231 13 C -0.079 4.079 14 C -0.193 4.193 15 C 0.088 3.912 16 C -0.491 4.491 17 H 0.080 0.920 18 C 0.036 3.964 19 N -0.816 5.816 20 Si 0.984 3.016 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.264 1.264 24 C -0.245 4.245 25 C -0.064 4.064 26 C -0.138 4.138 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.291 0.709 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 5.860 13.101 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 H 0.131 0.869 4 C -0.034 4.034 5 O -0.302 6.302 6 C 0.027 3.973 7 H 0.151 0.849 8 C 0.303 3.697 9 O -0.423 6.423 10 O -0.269 6.269 11 C 0.068 3.932 12 C -0.232 4.232 13 C -0.098 4.098 14 C -0.212 4.212 15 C 0.086 3.914 16 C -0.520 4.520 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.441 5.441 20 Si 0.805 3.195 21 H -0.181 1.181 22 H -0.188 1.188 23 H -0.189 1.189 24 C -0.264 4.264 25 C -0.082 4.082 26 C -0.176 4.176 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.858 5.458 13.256 15.486 hybrid contribution 0.093 -0.173 -0.944 0.964 sum -5.765 5.284 12.313 14.586 Atomic orbital electron populations 1.21842 0.92955 1.02034 1.03280 1.22584 0.97946 1.00821 0.92326 0.86868 1.23651 0.96365 0.86981 0.96419 1.88958 1.72864 1.39694 1.28702 1.22702 1.01285 0.89938 0.83327 0.84911 1.23887 0.73064 0.91481 0.81228 1.90630 1.49575 1.30321 1.71777 1.86658 1.75910 1.39324 1.24983 1.21623 1.00198 0.82749 0.88626 1.18938 0.93661 1.18146 0.92475 1.20766 0.97781 0.98119 0.93087 1.21260 0.96444 1.07295 0.96202 1.18047 0.92366 0.87718 0.93294 1.19955 0.99973 1.35317 0.96731 0.90231 1.26815 0.93588 0.91628 1.06032 1.69873 1.11741 1.23494 1.39018 0.85125 0.79703 0.79173 0.75538 1.18125 1.18845 1.18919 1.21174 0.98516 1.13486 0.93236 1.20708 0.94587 0.96846 0.96089 1.23227 0.95399 0.99303 0.99621 0.93362 0.90352 0.91714 0.89710 0.88390 0.90880 0.91421 0.87604 0.87707 0.89832 0.87868 0.86443 0.87411 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.92 71.98 0.64 -1.15 16 2 C -0.12 -1.65 3.64 -9.81 -0.04 -1.69 16 3 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 4 C 0.04 0.67 7.37 72.35 0.53 1.20 16 5 O -0.38 -10.07 10.80 -130.70 -1.41 -11.48 16 6 C 0.09 2.13 3.88 30.53 0.12 2.25 16 7 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 8 C 0.46 15.39 7.33 71.24 0.52 15.91 16 9 O -0.53 -21.13 16.31 28.15 0.46 -20.67 16 10 O -0.35 -12.68 10.20 -51.37 -0.52 -13.20 16 11 C 0.14 5.24 5.58 71.23 0.40 5.64 16 12 C -0.23 -9.98 5.54 -19.68 -0.11 -10.09 16 13 C -0.08 -3.67 9.67 22.22 0.21 -3.45 16 14 C -0.19 -10.03 8.70 22.73 0.20 -9.83 16 15 C 0.09 4.71 5.58 -21.29 -0.12 4.59 16 16 C -0.49 -25.88 9.05 23.46 0.21 -25.67 16 17 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 18 C 0.04 1.74 5.14 85.26 0.44 2.18 16 19 N -0.82 -41.46 10.95 21.83 0.24 -41.22 16 20 Si 0.98 36.89 29.59 68.60 2.03 38.92 16 21 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 24 C -0.24 -11.86 9.80 22.73 0.22 -11.64 16 25 C -0.06 -2.80 9.67 22.22 0.21 -2.58 16 26 C -0.14 -2.76 6.13 31.89 0.20 -2.57 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.39 7.69 -2.39 -0.02 1.37 16 32 H 0.07 2.57 8.07 -2.39 -0.02 2.56 16 33 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 34 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.11 5.67 6.15 -2.91 -0.02 5.65 16 36 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 37 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 1.60 7.78 -2.38 -0.02 1.58 16 Total: -1.00 -64.14 340.31 5.47 -58.67 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 1.03 Total: 25.88 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.65 Total: -36.90 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.24 Total: -41.22 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.48 Total: -45.35 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -64.14 5.47 -58.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885575939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.580 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds