Wall clock time and date at job start Tue Mar 31 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46673 * 2 1 4 4 C 1.50698 * 109.46977 * 240.00104 * 2 1 3 5 5 H 1.07996 * 119.99817 * 239.99461 * 4 2 1 6 6 C 1.37878 * 119.99884 * 60.00296 * 4 2 1 7 7 N 1.31517 * 120.00289 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99926 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46998 * 89.99407 * 8 6 4 10 10 H 1.48500 * 109.47034 * 209.99844 * 8 6 4 11 11 H 1.48502 * 109.46812 * 329.99542 * 8 6 4 12 12 O 1.45198 * 109.47135 * 119.99746 * 2 1 3 13 13 C 1.34223 * 117.00334 * 270.00316 * 12 2 1 14 14 O 1.20826 * 119.99920 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00321 * 180.02562 * 13 12 2 16 16 C 1.52993 * 109.47433 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47281 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47361 * 180.02562 * 17 16 15 19 19 O 1.21250 * 119.99733 * 0.02562 * 18 17 16 20 20 C 1.47164 * 119.99851 * 180.02562 * 18 17 16 21 21 C 1.39855 * 120.16680 * 180.02562 * 20 18 17 22 22 C 1.37890 * 119.82316 * 179.97438 * 21 20 18 23 23 C 1.38404 * 120.17220 * 359.97438 * 22 21 20 24 24 C 1.38409 * 120.34828 * 0.04376 * 23 22 21 25 25 C 1.37888 * 120.17293 * 359.95823 * 24 23 22 26 26 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47708 * 299.99880 * 1 2 3 28 28 H 1.09005 * 109.47353 * 60.00137 * 1 2 3 29 29 H 0.97002 * 119.99559 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46863 * 59.99769 * 15 13 12 31 31 H 1.08998 * 109.46966 * 300.00540 * 15 13 12 32 32 H 1.09001 * 109.47026 * 60.00186 * 16 15 13 33 33 H 1.08995 * 109.47248 * 300.00389 * 16 15 13 34 34 H 1.09001 * 109.46706 * 60.00274 * 17 16 15 35 35 H 1.08995 * 109.47529 * 300.00501 * 17 16 15 36 36 H 1.07999 * 120.09085 * 359.69867 * 21 20 18 37 37 H 1.08000 * 119.91186 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.82754 * 180.02562 * 23 22 21 39 39 H 1.07996 * 119.91489 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.08508 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1400 -5.1121 11 1 3.6308 -1.7564 -3.7120 12 8 2.0140 -0.6844 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9972 1.2517 2.2506 15 6 2.7193 -0.5770 3.5492 16 6 2.8643 0.4892 4.6368 17 6 3.3736 -0.1617 5.9244 18 6 3.5158 0.8884 6.9960 19 8 3.2369 2.0432 6.7538 20 6 3.9932 0.5120 8.3362 21 6 4.1261 1.4836 9.3334 22 6 4.5735 1.1230 10.5868 23 6 4.8903 -0.1965 10.8594 24 6 4.7619 -1.1637 9.8777 25 6 4.3158 -0.8190 8.6194 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7082 1.1610 -3.4844 30 1 3.6884 -1.0399 3.3631 31 1 2.0105 -1.3373 3.8773 32 1 1.8953 0.9525 4.8230 33 1 3.5732 1.2492 4.3084 34 1 4.3424 -0.6253 5.7385 35 1 2.6643 -0.9215 6.2526 36 1 3.8831 2.5142 9.1210 37 1 4.6762 1.8720 11.3581 38 1 5.2399 -0.4728 11.8432 39 1 5.0114 -2.1911 10.0979 40 1 4.2165 -1.5747 7.8543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892692211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:20 Heat of formation + Delta-G solvation = -138.140412 kcal Electronic energy + Delta-G solvation = -21501.589092 eV Core-core repulsion = 18052.035730 eV Total energy + Delta-G solvation = -3449.553362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35820 -40.97278 -39.14877 -37.72857 -35.42707 -35.29957 -32.61471 -31.87326 -31.73130 -29.67005 -27.47109 -25.70140 -24.03512 -23.33779 -22.50049 -21.13224 -20.61393 -18.85190 -18.41699 -18.22209 -17.36554 -17.27345 -16.66405 -16.48775 -16.40982 -16.03750 -15.26064 -15.02445 -14.98790 -14.66837 -14.37287 -14.20298 -13.85379 -13.50118 -13.25848 -13.16880 -12.95734 -12.82228 -12.76181 -12.57701 -12.48039 -12.38671 -12.15795 -11.94555 -11.78687 -11.56591 -11.35141 -10.99643 -10.69544 -10.60087 -9.92345 -9.91230 -8.29023 -6.46504 -0.28838 0.45771 1.39008 1.42190 1.44698 1.47168 1.55889 2.05312 2.42342 2.89338 3.00481 3.02444 3.72427 3.91989 4.00665 4.02240 4.05886 4.16648 4.25024 4.46391 4.51151 4.53067 4.57921 4.64463 4.68980 4.76812 4.79473 4.84423 4.96842 5.09964 5.10854 5.18492 5.30967 5.40583 5.48412 5.51202 5.53865 5.62666 5.92851 5.99282 6.11753 6.55799 6.60104 7.00284 7.26152 8.78818 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044023 B = 0.002280 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.879035 B =12278.260534 C =12603.208441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.214 3.786 3 H 0.002 0.998 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.987 3.013 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.263 1.263 12 O -0.363 6.363 13 C 0.437 3.563 14 O -0.564 6.564 15 C -0.099 4.099 16 C -0.097 4.097 17 C -0.155 4.155 18 C 0.392 3.608 19 O -0.502 6.502 20 C -0.191 4.191 21 C -0.089 4.089 22 C -0.142 4.142 23 C -0.089 4.089 24 C -0.135 4.135 25 C -0.068 4.068 26 H 0.049 0.951 27 H 0.020 0.980 28 H 0.079 0.921 29 H 0.270 0.730 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -9.168 26.904 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.161 3.839 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.810 3.190 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.187 1.187 12 O -0.279 6.279 13 C 0.282 3.718 14 O -0.456 6.456 15 C -0.136 4.136 16 C -0.135 4.135 17 C -0.191 4.191 18 C 0.273 3.727 19 O -0.380 6.380 20 C -0.192 4.192 21 C -0.107 4.107 22 C -0.160 4.160 23 C -0.107 4.107 24 C -0.153 4.153 25 C -0.086 4.086 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.368 -8.106 26.586 29.027 hybrid contribution -0.162 0.810 -1.037 1.326 sum 8.206 -7.296 25.549 27.808 Atomic orbital electron populations 1.21976 0.96847 1.00470 1.00643 1.20316 0.92025 0.91943 0.79619 0.98050 1.21313 1.33368 1.13892 0.89843 0.91106 1.25924 0.94773 0.95697 1.02417 1.70040 1.36720 1.23785 1.25204 0.85122 0.79093 0.78017 0.76799 1.19044 1.20493 1.18716 1.86466 1.76199 1.43734 1.21549 1.24923 0.73760 0.85861 0.87212 1.90603 1.50412 1.19216 1.85357 1.21517 1.05859 0.99588 0.86618 1.21117 1.01717 0.96945 0.93699 1.22092 1.06693 0.98560 0.91805 1.23108 0.71519 0.89140 0.88972 1.90554 1.40395 1.23960 1.83139 1.20611 1.07227 0.96217 0.95153 1.21550 0.96216 0.99291 0.93670 1.21406 1.00210 0.97978 0.96374 1.21853 0.95606 0.92483 1.00738 1.21608 0.99591 1.01349 0.92750 1.21854 0.94109 0.94228 0.98408 0.93237 0.96060 0.90226 0.92042 0.84695 0.84416 0.93216 0.93400 0.84426 0.84314 0.86857 0.84009 0.82913 0.82319 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.53 9.33 71.98 0.67 -6.86 16 2 C 0.21 12.15 2.56 29.85 0.08 12.23 16 3 H 0.00 0.11 7.16 -2.39 -0.02 0.09 16 4 C -0.55 -31.50 8.90 25.60 0.23 -31.27 16 5 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.99 43.22 29.54 68.60 2.03 45.24 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 12 O -0.36 -17.59 9.86 -51.35 -0.51 -18.10 16 13 C 0.44 18.48 7.93 71.24 0.56 19.04 16 14 O -0.56 -28.80 15.20 21.96 0.33 -28.47 16 15 C -0.10 -2.49 5.81 29.85 0.17 -2.32 16 16 C -0.10 -2.52 3.79 30.59 0.12 -2.41 16 17 C -0.16 -2.36 4.31 29.85 0.13 -2.23 16 18 C 0.39 8.66 7.12 28.03 0.20 8.86 16 19 O -0.50 -16.23 15.98 -2.94 -0.05 -16.28 16 20 C -0.19 -3.37 5.87 -20.15 -0.12 -3.49 16 21 C -0.09 -1.66 9.60 22.58 0.22 -1.44 16 22 C -0.14 -1.83 10.03 22.23 0.22 -1.61 16 23 C -0.09 -0.79 10.04 22.35 0.22 -0.57 16 24 C -0.14 -1.08 10.03 22.23 0.22 -0.85 16 25 C -0.07 -0.71 9.47 22.58 0.21 -0.49 16 26 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 4.54 6.07 -2.38 -0.01 4.53 16 29 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.05 1.55 8.06 -2.39 -0.02 1.54 16 33 H 0.05 1.52 8.06 -2.39 -0.02 1.50 16 34 H 0.14 1.19 8.09 -2.39 -0.02 1.18 16 35 H 0.14 1.16 8.09 -2.39 -0.02 1.14 16 36 H 0.11 2.42 7.65 -2.91 -0.02 2.40 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.16 0.33 8.06 -2.91 -0.02 0.30 16 40 H 0.16 0.63 7.05 -2.91 -0.02 0.61 16 Total: -1.00 -80.94 346.39 6.67 -74.27 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.03 Total: 9.51 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 3.59 Total: -12.35 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.24 Total: -53.83 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -0.22 Total: -62.85 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -80.94 6.67 -74.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892692211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.871 kcal (2) G-P(sol) polarization free energy of solvation -80.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds