Wall clock time and date at job start Tue Mar 31 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46817 * 2 1 4 4 C 1.50701 * 109.47404 * 119.99556 * 2 1 3 5 5 H 1.08002 * 120.00012 * 119.99952 * 4 2 1 6 6 C 1.37879 * 119.99789 * 300.00710 * 4 2 1 7 7 N 1.31515 * 120.00218 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99841 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47302 * 89.99573 * 8 6 4 10 10 H 1.48497 * 109.47254 * 209.99781 * 8 6 4 11 11 H 1.48498 * 109.46975 * 330.00022 * 8 6 4 12 12 O 1.45198 * 109.47443 * 240.00202 * 2 1 3 13 13 C 1.34223 * 117.00334 * 89.99609 * 12 2 1 14 14 O 1.20826 * 119.99920 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00321 * 180.02562 * 13 12 2 16 16 C 1.52993 * 109.47433 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47281 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47361 * 180.02562 * 17 16 15 19 19 O 1.21250 * 119.99733 * 0.02562 * 18 17 16 20 20 C 1.47164 * 119.99851 * 180.02562 * 18 17 16 21 21 C 1.39855 * 120.16680 * 180.02562 * 20 18 17 22 22 C 1.37890 * 119.82316 * 179.97438 * 21 20 18 23 23 C 1.38404 * 120.17220 * 359.97438 * 22 21 20 24 24 C 1.38409 * 120.34828 * 0.04376 * 23 22 21 25 25 C 1.37888 * 120.17293 * 359.95823 * 24 23 22 26 26 H 1.08991 * 109.47092 * 60.00655 * 1 2 3 27 27 H 1.08999 * 109.46382 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47220 * 299.99749 * 1 2 3 29 29 H 0.96996 * 119.99623 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46863 * 59.99769 * 15 13 12 31 31 H 1.08998 * 109.46966 * 300.00540 * 15 13 12 32 32 H 1.09001 * 109.47026 * 60.00186 * 16 15 13 33 33 H 1.08995 * 109.47248 * 300.00389 * 16 15 13 34 34 H 1.09001 * 109.46706 * 60.00274 * 17 16 15 35 35 H 1.08995 * 109.47529 * 300.00501 * 17 16 15 36 36 H 1.07999 * 120.09085 * 359.69867 * 21 20 18 37 37 H 1.08000 * 119.91186 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.82754 * 180.02562 * 23 22 21 39 39 H 1.07996 * 119.91489 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.08508 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.6297 -0.5456 4.4125 10 1 1.3432 -0.9490 5.1121 11 1 2.4860 -2.5659 3.7121 12 8 2.0141 -0.6844 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9982 1.2519 -2.2503 15 6 2.7184 -0.5772 -3.5494 16 6 2.8624 0.4888 -4.6374 17 6 3.3719 -0.1621 -5.9249 18 6 3.5144 0.8880 -6.9964 19 8 3.2364 2.0431 -6.7540 20 6 3.9909 0.5115 -8.3369 21 6 4.1250 1.4833 -9.3337 22 6 4.5726 1.1227 -10.5871 23 6 4.8894 -0.1967 -10.8597 24 6 4.7590 -1.1643 -9.8786 25 6 4.3126 -0.8196 -8.6203 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7094 1.1618 3.4843 30 1 2.0089 -1.3369 -3.8773 31 1 3.6872 -1.0408 -3.3639 32 1 3.5717 1.2489 -4.3097 33 1 1.8934 0.9521 -4.8228 34 1 2.6629 -0.9223 -6.2528 35 1 4.3410 -0.6250 -5.7393 36 1 3.8743 2.5126 -9.1237 37 1 4.6771 1.8720 -11.3579 38 1 5.2399 -0.4729 -11.8432 39 1 5.0077 -2.1918 -10.0991 40 1 4.2110 -1.5758 -7.8560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892692219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:23 Heat of formation + Delta-G solvation = -118.620109 kcal Electronic energy + Delta-G solvation = -21500.643274 eV Core-core repulsion = 18051.936376 eV Total energy + Delta-G solvation = -3448.706898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.34776 -39.46463 -38.46156 -35.89366 -34.25060 -33.22144 -31.93112 -31.34831 -29.77506 -28.56866 -25.30947 -24.73069 -23.14912 -22.39253 -21.05307 -19.87221 -19.42259 -17.62463 -16.91940 -16.52907 -16.12031 -16.06612 -15.80401 -15.14878 -15.10238 -14.70924 -14.42749 -14.00801 -13.89750 -13.81763 -12.92555 -12.88766 -12.38894 -12.17512 -12.07179 -11.96327 -11.72400 -11.53868 -11.30561 -11.15444 -11.02854 -10.82764 -10.74372 -10.33778 -10.26630 -9.92786 -9.54685 -9.47316 -9.41202 -9.35915 -8.87412 -8.47130 -6.16281 -4.23227 0.33194 0.96229 2.16450 3.07431 3.25695 3.30786 3.34673 3.43773 3.53896 3.90431 4.35448 4.39484 4.52310 4.63025 4.77340 4.93633 4.93942 4.98271 5.07525 5.16503 5.29665 5.41747 5.42302 5.53496 5.57533 5.65314 5.91259 5.96496 6.01951 6.06435 6.13394 6.38356 6.47026 6.68047 6.91594 6.95204 7.22358 7.33397 7.62775 7.76283 7.98206 8.17519 8.68397 8.92542 9.42165 10.91176 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044034 B = 0.002280 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.718331 B =12278.637407 C =12603.524597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.359 6.359 13 C 0.448 3.552 14 O -0.521 6.521 15 C -0.115 4.115 16 C -0.100 4.100 17 C -0.165 4.165 18 C 0.393 3.607 19 O -0.443 6.443 20 C -0.167 4.167 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.092 4.092 24 C -0.134 4.134 25 C -0.073 4.073 26 H 0.016 0.984 27 H 0.036 0.964 28 H 0.099 0.901 29 H 0.266 0.734 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -5.373 -25.619 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.275 6.275 13 C 0.291 3.709 14 O -0.411 6.411 15 C -0.153 4.153 16 C -0.138 4.138 17 C -0.203 4.203 18 C 0.270 3.730 19 O -0.317 6.317 20 C -0.168 4.168 21 C -0.082 4.082 22 C -0.152 4.152 23 C -0.110 4.110 24 C -0.152 4.152 25 C -0.091 4.091 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.000 -4.290 -25.264 26.564 hybrid contribution 0.245 -0.399 0.777 0.908 sum 7.245 -4.689 -24.487 25.963 Atomic orbital electron populations 1.22150 0.97616 1.00036 1.01397 1.20618 0.91381 0.93937 0.77924 0.93613 1.21031 1.32414 1.13440 0.88942 0.91342 1.24907 0.94965 0.95144 0.99104 1.69905 1.36069 1.22581 1.24139 0.86268 0.78531 0.79865 0.81422 1.20415 1.20967 1.19610 1.86472 1.75844 1.43758 1.21470 1.23359 0.75115 0.86102 0.86324 1.90615 1.48627 1.17036 1.84793 1.21325 1.03576 0.99408 0.91006 1.21211 1.03729 0.97349 0.91515 1.22059 1.04122 0.98945 0.95142 1.22538 0.73258 0.89601 0.87648 1.90564 1.37364 1.21674 1.82126 1.20641 1.05249 0.94768 0.96146 1.21493 0.94685 0.99791 0.92234 1.21184 1.00434 0.96631 0.96931 1.21444 0.97086 0.93163 0.99357 1.21180 1.00753 0.99917 0.93356 1.21522 0.95395 0.95103 0.97130 0.96529 0.94477 0.88290 0.92418 0.88316 0.88218 0.90344 0.90396 0.88010 0.87981 0.84875 0.85436 0.85636 0.85327 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.83 8.90 -34.44 -0.31 -15.14 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 O -0.36 -8.65 9.86 -39.24 -0.39 -9.04 16 13 C 0.45 9.40 7.93 36.00 0.29 9.68 16 14 O -0.52 -12.66 15.20 -18.75 -0.29 -12.95 16 15 C -0.12 -1.59 5.81 -27.89 -0.16 -1.75 16 16 C -0.10 -1.33 3.79 -26.73 -0.10 -1.43 16 17 C -0.17 -1.48 4.31 -27.88 -0.12 -1.60 16 18 C 0.39 4.34 7.12 -30.69 -0.22 4.12 16 19 O -0.44 -6.61 15.98 5.58 0.09 -6.52 16 20 C -0.17 -1.54 5.87 -105.07 -0.62 -2.16 16 21 C -0.06 -0.58 9.60 -39.10 -0.38 -0.95 16 22 C -0.13 -0.93 10.03 -39.65 -0.40 -1.33 16 23 C -0.09 -0.55 10.04 -39.46 -0.40 -0.95 16 24 C -0.13 -0.80 10.03 -39.65 -0.40 -1.20 16 25 C -0.07 -0.50 9.47 -39.11 -0.37 -0.88 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 33 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.13 1.23 7.65 -52.49 -0.40 0.83 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.62 7.05 -52.49 -0.37 0.25 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -34.34 346.39 -8.39 -42.73 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.64 Total: -0.82 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.00 Total: -9.82 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.63 Total: -25.05 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.58 Total: -28.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.34 -8.39 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892692219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.892 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds