Wall clock time and date at job start Tue Mar 31 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46817 * 2 1 4 4 C 1.50701 * 109.47404 * 119.99556 * 2 1 3 5 5 H 1.08002 * 120.00012 * 119.99952 * 4 2 1 6 6 C 1.37879 * 119.99789 * 300.00710 * 4 2 1 7 7 N 1.31515 * 120.00218 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99841 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47302 * 89.99573 * 8 6 4 10 10 H 1.48497 * 109.47254 * 209.99781 * 8 6 4 11 11 H 1.48498 * 109.46975 * 330.00022 * 8 6 4 12 12 O 1.45198 * 109.47443 * 240.00202 * 2 1 3 13 13 C 1.34223 * 117.00334 * 89.99609 * 12 2 1 14 14 O 1.20826 * 119.99920 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00321 * 180.02562 * 13 12 2 16 16 C 1.52993 * 109.47433 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47281 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47361 * 180.02562 * 17 16 15 19 19 O 1.21250 * 119.99733 * 0.02562 * 18 17 16 20 20 C 1.47164 * 119.99851 * 180.02562 * 18 17 16 21 21 C 1.39855 * 120.16680 * 180.02562 * 20 18 17 22 22 C 1.37890 * 119.82316 * 179.97438 * 21 20 18 23 23 C 1.38404 * 120.17220 * 359.97438 * 22 21 20 24 24 C 1.38409 * 120.34828 * 0.04376 * 23 22 21 25 25 C 1.37888 * 120.17293 * 359.95823 * 24 23 22 26 26 H 1.08991 * 109.47092 * 60.00655 * 1 2 3 27 27 H 1.08999 * 109.46382 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47220 * 299.99749 * 1 2 3 29 29 H 0.96996 * 119.99623 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46863 * 59.99769 * 15 13 12 31 31 H 1.08998 * 109.46966 * 300.00540 * 15 13 12 32 32 H 1.09001 * 109.47026 * 60.00186 * 16 15 13 33 33 H 1.08995 * 109.47248 * 300.00389 * 16 15 13 34 34 H 1.09001 * 109.46706 * 60.00274 * 17 16 15 35 35 H 1.08995 * 109.47529 * 300.00501 * 17 16 15 36 36 H 1.07999 * 120.09085 * 359.69867 * 21 20 18 37 37 H 1.08000 * 119.91186 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.82754 * 180.02562 * 23 22 21 39 39 H 1.07996 * 119.91489 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.08508 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.6297 -0.5456 4.4125 10 1 1.3432 -0.9490 5.1121 11 1 2.4860 -2.5659 3.7121 12 8 2.0141 -0.6844 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9982 1.2519 -2.2503 15 6 2.7184 -0.5772 -3.5494 16 6 2.8624 0.4888 -4.6374 17 6 3.3719 -0.1621 -5.9249 18 6 3.5144 0.8880 -6.9964 19 8 3.2364 2.0431 -6.7540 20 6 3.9909 0.5115 -8.3369 21 6 4.1250 1.4833 -9.3337 22 6 4.5726 1.1227 -10.5871 23 6 4.8894 -0.1967 -10.8597 24 6 4.7590 -1.1643 -9.8786 25 6 4.3126 -0.8196 -8.6203 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7094 1.1618 3.4843 30 1 2.0089 -1.3369 -3.8773 31 1 3.6872 -1.0408 -3.3639 32 1 3.5717 1.2489 -4.3097 33 1 1.8934 0.9521 -4.8228 34 1 2.6629 -0.9223 -6.2528 35 1 4.3410 -0.6250 -5.7393 36 1 3.8743 2.5126 -9.1237 37 1 4.6771 1.8720 -11.3579 38 1 5.2399 -0.4729 -11.8432 39 1 5.0077 -2.1918 -10.0991 40 1 4.2110 -1.5758 -7.8560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892692219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:23 Heat of formation + Delta-G solvation = -138.141618 kcal Electronic energy + Delta-G solvation = -21501.489790 eV Core-core repulsion = 18051.936376 eV Total energy + Delta-G solvation = -3449.553414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35808 -40.97268 -39.14869 -37.72831 -35.42699 -35.29959 -32.61464 -31.87321 -31.73142 -29.67001 -27.47100 -25.70136 -24.03513 -23.33777 -22.50045 -21.13198 -20.61384 -18.85202 -18.41691 -18.22201 -17.36563 -17.27317 -16.66372 -16.48733 -16.40986 -16.03744 -15.26049 -15.02489 -14.98756 -14.66824 -14.37263 -14.20258 -13.85301 -13.50132 -13.25732 -13.16895 -12.94687 -12.84372 -12.77751 -12.57695 -12.47327 -12.37399 -12.14463 -11.94548 -11.78718 -11.57558 -11.35343 -10.98715 -10.69517 -10.60636 -9.92338 -9.91224 -8.29047 -6.46487 -0.28830 0.45777 1.39088 1.42127 1.44385 1.47175 1.56167 2.05276 2.42372 2.89343 3.00538 3.02437 3.72438 3.91996 4.00660 4.02270 4.05891 4.16659 4.25029 4.46420 4.51164 4.53116 4.57939 4.64491 4.68991 4.76833 4.79494 4.84436 4.96849 5.09979 5.10861 5.18521 5.30979 5.40590 5.48485 5.51210 5.53871 5.62673 5.92871 5.99287 6.11767 6.55811 6.60122 7.00301 7.26144 8.78850 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044034 B = 0.002280 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.718331 B =12278.637407 C =12603.524597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.214 3.786 3 H 0.002 0.998 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.987 3.013 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.259 1.259 12 O -0.363 6.363 13 C 0.437 3.563 14 O -0.564 6.564 15 C -0.099 4.099 16 C -0.097 4.097 17 C -0.155 4.155 18 C 0.391 3.609 19 O -0.502 6.502 20 C -0.191 4.191 21 C -0.089 4.089 22 C -0.142 4.142 23 C -0.089 4.089 24 C -0.135 4.135 25 C -0.068 4.068 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.270 0.730 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -9.172 -26.913 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.161 3.839 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.810 3.190 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.183 1.183 12 O -0.279 6.279 13 C 0.282 3.718 14 O -0.456 6.456 15 C -0.136 4.136 16 C -0.135 4.135 17 C -0.191 4.191 18 C 0.273 3.727 19 O -0.380 6.380 20 C -0.192 4.192 21 C -0.107 4.107 22 C -0.160 4.160 23 C -0.107 4.107 24 C -0.153 4.153 25 C -0.086 4.086 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.350 -8.115 -26.595 29.032 hybrid contribution -0.146 0.823 1.039 1.334 sum 8.204 -7.292 -25.556 27.813 Atomic orbital electron populations 1.21971 0.96836 1.00484 1.00639 1.20319 0.92035 0.91936 0.79620 0.98063 1.21317 1.33338 1.13917 0.89841 0.91097 1.25923 0.94740 0.95734 1.02417 1.70037 1.36689 1.23810 1.25212 0.85124 0.78022 0.79017 0.76882 1.19797 1.20144 1.18315 1.86467 1.76195 1.43734 1.21550 1.24923 0.73750 0.85865 0.87218 1.90603 1.50414 1.19209 1.85365 1.21517 1.05875 0.99587 0.86604 1.21117 1.01715 0.96947 0.93699 1.22092 1.06687 0.98560 0.91809 1.23108 0.71508 0.89145 0.88978 1.90554 1.40393 1.23954 1.83146 1.20611 1.07225 0.96204 0.95168 1.21550 0.96220 0.99289 0.93668 1.21406 1.00234 0.97973 0.96355 1.21853 0.95602 0.92485 1.00739 1.21608 0.99591 1.01348 0.92751 1.21854 0.94113 0.94229 0.98402 0.96048 0.93218 0.90239 0.92038 0.84424 0.84684 0.93411 0.93207 0.84305 0.84434 0.86857 0.84010 0.82913 0.82319 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.53 9.33 71.98 0.67 -6.86 16 2 C 0.21 12.15 2.56 29.85 0.08 12.22 16 3 H 0.00 0.10 7.16 -2.38 -0.02 0.08 16 4 C -0.55 -31.49 8.90 25.60 0.23 -31.26 16 5 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.99 43.22 29.54 68.60 2.03 45.25 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 O -0.36 -17.59 9.86 -51.35 -0.51 -18.10 16 13 C 0.44 18.47 7.93 71.24 0.56 19.04 16 14 O -0.56 -28.80 15.20 21.96 0.33 -28.47 16 15 C -0.10 -2.49 5.81 29.85 0.17 -2.32 16 16 C -0.10 -2.52 3.79 30.59 0.12 -2.41 16 17 C -0.16 -2.36 4.31 29.85 0.13 -2.23 16 18 C 0.39 8.66 7.12 28.03 0.20 8.86 16 19 O -0.50 -16.23 15.98 -2.94 -0.05 -16.28 16 20 C -0.19 -3.37 5.87 -20.15 -0.12 -3.49 16 21 C -0.09 -1.66 9.60 22.58 0.22 -1.44 16 22 C -0.14 -1.83 10.03 22.23 0.22 -1.61 16 23 C -0.09 -0.79 10.04 22.35 0.22 -0.57 16 24 C -0.14 -1.08 10.03 22.23 0.22 -0.85 16 25 C -0.07 -0.71 9.47 22.58 0.21 -0.49 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.08 4.53 6.07 -2.39 -0.01 4.52 16 29 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 1.52 8.06 -2.39 -0.02 1.50 16 33 H 0.05 1.56 8.06 -2.39 -0.02 1.54 16 34 H 0.14 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.14 1.19 8.09 -2.39 -0.02 1.18 16 36 H 0.11 2.42 7.65 -2.91 -0.02 2.40 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.16 0.33 8.06 -2.91 -0.02 0.30 16 40 H 0.16 0.63 7.05 -2.91 -0.02 0.61 16 Total: -1.00 -80.95 346.39 6.67 -74.28 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.03 Total: 9.49 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 3.59 Total: -12.34 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.24 Total: -53.83 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -0.22 Total: -62.85 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -80.95 6.67 -74.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892692219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.862 kcal (2) G-P(sol) polarization free energy of solvation -80.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds