Wall clock time and date at job start Tue Mar 31 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00365 * 2 1 4 4 H 1.48496 * 109.47417 * 270.00747 * 3 2 1 5 5 H 1.48503 * 109.46574 * 30.00247 * 3 2 1 6 6 H 1.48497 * 109.47055 * 149.99981 * 3 2 1 7 7 C 1.37883 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99351 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00221 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46900 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47156 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00157 * 180.02562 * 11 10 9 13 13 O 1.21585 * 119.99866 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99962 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00080 * 179.97438 * 14 12 11 16 16 H 1.09002 * 110.88653 * 322.94477 * 15 14 12 17 17 C 1.54347 * 110.81875 * 86.45249 * 15 14 12 18 18 C 1.51373 * 105.16882 * 91.87883 * 17 15 14 19 19 C 1.38495 * 130.38998 * 197.22091 * 18 17 15 20 20 C 1.38103 * 120.21530 * 179.97438 * 19 18 17 21 21 C 1.38256 * 119.93270 * 359.97438 * 20 19 18 22 22 C 1.38098 * 119.93911 * 359.97438 * 21 20 19 23 23 C 1.38213 * 109.75950 * 17.18969 * 18 17 15 24 24 C 1.51369 * 109.75866 * 0.02562 * 23 18 17 25 25 H 1.09004 * 110.38660 * 223.84501 * 24 23 18 26 26 O 1.42895 * 110.30963 * 101.73574 * 24 23 18 27 27 H 0.97003 * 119.99583 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47021 * 59.99619 * 9 7 2 29 29 H 1.09004 * 109.46890 * 299.99551 * 9 7 2 30 30 H 1.08998 * 109.46911 * 60.00087 * 10 9 7 31 31 H 1.08997 * 109.47465 * 299.99840 * 10 9 7 32 32 H 0.97003 * 120.00055 * 0.02562 * 11 10 9 33 33 H 0.97006 * 120.00078 * 0.02562 * 14 12 11 34 34 H 1.08997 * 110.30742 * 210.80014 * 17 15 14 35 35 H 1.09003 * 110.30761 * 332.95686 * 17 15 14 36 36 H 1.08003 * 119.89565 * 359.95626 * 19 18 17 37 37 H 1.08003 * 120.03585 * 180.02562 * 20 19 18 38 38 H 1.08006 * 120.02855 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.89374 * 180.02562 * 22 21 20 40 40 H 0.96702 * 114.00160 * 64.25015 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6367 -0.0022 12 6 6.1603 -3.8039 -0.0028 13 8 5.5523 -4.8568 -0.0019 14 7 7.5080 -3.8040 -0.0034 15 6 8.2405 -5.0727 -0.0035 16 1 7.7312 -5.8155 0.6105 17 6 8.4369 -5.5926 -1.4434 18 6 9.7727 -5.0356 -1.8870 19 6 10.3134 -4.9032 -3.1551 20 6 11.5709 -4.3568 -3.3210 21 6 12.2928 -3.9398 -2.2181 22 6 11.7549 -4.0700 -0.9528 23 6 10.4946 -4.6191 -0.7844 24 6 9.6936 -4.8682 0.4756 25 1 9.7543 -4.0067 1.1407 26 8 10.1670 -6.0411 1.1405 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8745 -0.6801 -0.8912 30 1 3.6577 -3.1506 -0.8907 31 1 3.6585 -3.1503 0.8892 32 1 5.9715 -1.7967 -0.0025 33 1 7.9931 -2.9639 -0.0030 34 1 8.4598 -6.6823 -1.4523 35 1 7.6403 -5.2250 -2.0903 36 1 9.7500 -5.2286 -4.0172 37 1 11.9895 -4.2546 -4.3113 38 1 13.2765 -3.5126 -2.3459 39 1 12.3193 -3.7436 -0.0918 40 1 11.0757 -5.9703 1.4638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894129932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:28 Heat of formation + Delta-G solvation = -81.279906 kcal Electronic energy + Delta-G solvation = -22211.142540 eV Core-core repulsion = 18796.347585 eV Total energy + Delta-G solvation = -3414.794954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78174 -40.60265 -38.04118 -36.79267 -36.07560 -34.82747 -33.79929 -32.05579 -31.81056 -29.19907 -27.75342 -26.62128 -23.62941 -22.73145 -22.32578 -21.96737 -21.55548 -19.58873 -18.96634 -18.62094 -17.43401 -17.01994 -16.78105 -16.33223 -16.15682 -16.04264 -15.65296 -15.30734 -15.02433 -14.92796 -14.61309 -14.53446 -14.22500 -13.95095 -13.34012 -13.30976 -13.01837 -12.91349 -12.57618 -12.19462 -12.14897 -12.05184 -11.79467 -11.75110 -11.54409 -11.33668 -11.06431 -10.77979 -10.45445 -9.85495 -9.80662 -9.56469 -8.29024 -6.36321 0.33034 0.44008 1.39925 1.42770 1.53936 1.56505 2.10420 2.37917 2.75892 3.06099 3.08854 3.26357 3.34832 3.72944 3.90653 4.00252 4.15176 4.21871 4.31652 4.34926 4.46210 4.52636 4.60963 4.71046 4.76155 4.77650 4.80420 5.04764 5.14360 5.16667 5.42589 5.43585 5.44755 5.49798 5.58482 5.64472 5.66727 5.97487 6.05698 6.24188 6.71161 6.77079 7.09073 7.28089 7.55761 8.87910 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023460 B = 0.002970 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.217873 B = 9425.014486 C = 9886.260513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.729 5.729 12 C 0.703 3.297 13 O -0.635 6.635 14 N -0.718 5.718 15 C 0.168 3.832 16 H 0.087 0.913 17 C -0.092 4.092 18 C -0.090 4.090 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.150 4.150 24 C 0.154 3.846 25 H 0.093 0.907 26 O -0.563 6.563 27 H 0.268 0.732 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.411 0.589 33 H 0.412 0.588 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.636 -5.042 -2.457 33.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.040 3.960 11 N -0.385 5.385 12 C 0.402 3.598 13 O -0.516 6.516 14 N -0.375 5.375 15 C 0.062 3.938 16 H 0.105 0.895 17 C -0.131 4.131 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.131 4.131 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.150 4.150 24 C 0.095 3.905 25 H 0.110 0.890 26 O -0.372 6.372 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.247 0.753 33 H 0.249 0.751 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 31.338 -6.114 -2.577 32.032 hybrid contribution 0.178 1.222 -0.116 1.240 sum 31.516 -4.892 -2.693 32.007 Atomic orbital electron populations 1.70081 1.08627 1.28431 1.52027 1.26096 0.95691 1.03913 0.93672 0.85520 0.79683 0.77243 0.79301 1.19031 1.21293 1.15862 1.21261 0.91613 0.93393 1.51513 0.95317 1.19639 0.94321 0.92815 0.98106 1.20890 0.76982 0.98299 0.99826 1.45100 1.07311 1.07200 1.78844 1.16039 0.82105 0.84073 0.77548 1.90896 1.68873 1.32133 1.59733 1.44627 1.03439 1.09490 1.79972 1.20985 0.91108 0.85623 0.96079 0.89465 1.21459 0.94403 1.01099 0.96093 1.20625 0.95985 0.98155 0.94290 1.20889 0.96751 1.00945 0.96090 1.21418 0.93783 0.97452 1.00407 1.21426 1.01019 1.00145 0.92018 1.20933 0.93531 0.97843 0.98760 1.21187 0.96318 1.01675 0.95829 1.21030 0.89948 0.89076 0.90464 0.88955 1.86489 1.36362 1.37762 1.76580 0.92331 0.94369 0.94612 0.94079 0.93955 0.75317 0.75139 0.89359 0.91604 0.85875 0.83794 0.83169 0.83469 0.74648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.34 16 2 C 0.00 0.19 5.47 84.66 0.46 0.65 16 3 Si 0.96 42.23 27.47 68.60 1.88 44.11 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 7 C -0.54 -30.97 9.66 25.60 0.25 -30.73 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.36 16 10 C 0.16 6.84 5.61 86.38 0.48 7.32 16 11 N -0.73 -23.32 5.56 -478.55 -2.66 -25.98 16 12 C 0.70 23.33 8.56 179.06 1.53 24.87 16 13 O -0.64 -27.34 16.08 -3.98 -0.06 -27.41 16 14 N -0.72 -16.78 5.15 -453.42 -2.33 -19.12 16 15 C 0.17 3.91 3.08 45.91 0.14 4.05 16 16 H 0.09 2.51 7.68 -2.39 -0.02 2.49 16 17 C -0.09 -2.15 6.48 30.52 0.20 -1.95 16 18 C -0.09 -1.78 6.14 -19.60 -0.12 -1.90 16 19 C -0.13 -2.26 10.04 22.30 0.22 -2.03 16 20 C -0.11 -1.50 10.05 22.24 0.22 -1.28 16 21 C -0.13 -1.42 10.05 22.24 0.22 -1.20 16 22 C -0.09 -1.07 10.04 22.30 0.22 -0.85 16 23 C -0.15 -2.38 5.81 -19.59 -0.11 -2.49 16 24 C 0.15 2.50 3.82 30.52 0.12 2.62 16 25 H 0.09 1.12 8.05 -2.39 -0.02 1.10 16 26 O -0.56 -9.15 13.36 -148.98 -1.99 -11.14 16 27 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 29 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.41 10.02 8.49 -92.71 -0.79 9.23 16 33 H 0.41 6.83 8.60 -92.70 -0.80 6.04 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 36 H 0.12 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.40 2.66 9.12 -74.06 -0.68 1.98 16 Total: -1.00 -77.97 339.03 -2.13 -80.10 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -1.23 Total: 22.05 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 3.97 Total: -3.29 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -4.70 Total: -104.43 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -2.05 Total: -38.54 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Total: -77.97 -2.13 -80.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894129932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.181 kcal (2) G-P(sol) polarization free energy of solvation -77.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds