Wall clock time and date at job start Tue Mar 31 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 120.00105 * 2 1 4 4 H 1.08998 * 109.47403 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47148 * 120.00456 * 3 2 1 6 6 C 1.53006 * 109.47303 * 295.00032 * 5 3 2 7 7 C 1.52995 * 109.47281 * 240.00351 * 3 2 1 8 8 C 1.50702 * 109.47180 * 65.00456 * 7 3 2 9 9 O 1.20823 * 120.00089 * 359.97438 * 8 7 3 10 10 O 1.34264 * 119.99739 * 180.02562 * 8 7 3 11 11 C 1.35931 * 116.99568 * 175.01091 * 10 8 7 12 12 C 1.38828 * 120.01630 * 255.01825 * 11 10 8 13 13 C 1.38193 * 120.07645 * 179.72062 * 12 11 10 14 14 C 1.38152 * 120.12520 * 0.55283 * 13 12 11 15 15 C 1.38895 * 120.04082 * 359.72697 * 14 13 12 16 16 O 1.35745 * 120.04225 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00404 * 185.61399 * 16 15 14 18 18 H 1.07996 * 119.99417 * 354.94164 * 17 16 15 19 19 C 1.38650 * 120.00290 * 174.93563 * 17 16 15 20 20 N 1.31553 * 119.99788 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00023 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46909 * 90.00003 * 21 19 17 23 23 H 1.48500 * 109.47134 * 209.99989 * 21 19 17 24 24 H 1.48499 * 109.46933 * 330.00208 * 21 19 17 25 25 C 1.38570 * 120.02377 * 75.29335 * 11 10 8 26 26 H 1.07999 * 119.99709 * 359.97438 * 1 2 3 27 27 H 1.07993 * 119.99976 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99709 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47556 * 175.00119 * 5 3 2 30 30 H 1.09006 * 109.47193 * 54.99801 * 5 3 2 31 31 H 1.09000 * 109.46744 * 59.99589 * 6 5 3 32 32 H 1.08994 * 109.47102 * 300.00367 * 6 5 3 33 33 H 1.08994 * 109.47664 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47437 * 185.00170 * 7 3 2 35 35 H 1.08999 * 109.47677 * 304.99866 * 7 3 2 36 36 H 1.08001 * 119.96134 * 359.97438 * 12 11 10 37 37 H 1.08007 * 119.93506 * 180.25602 * 13 12 11 38 38 H 1.08000 * 119.97797 * 179.70049 * 14 13 12 39 39 H 0.97003 * 120.00157 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.05973 * 359.97379 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3860 1.2491 6 6 2.0566 1.4305 2.4954 7 6 2.9431 1.3861 -1.2492 8 6 2.0697 1.4302 -2.4766 9 8 0.8671 1.3994 -2.3637 10 8 2.6279 1.5027 -3.6955 11 6 1.7895 1.4339 -4.7632 12 6 1.7189 0.2703 -5.5170 13 6 0.8627 0.1970 -6.5992 14 6 0.0830 1.2850 -6.9414 15 6 0.1539 2.4537 -6.1943 16 8 -0.6118 3.5229 -6.5307 17 6 -0.4108 4.6621 -5.8381 18 1 0.2735 4.6724 -5.0027 19 6 -1.0825 5.8203 -6.1985 20 7 -0.8859 6.9319 -5.5229 21 14 -2.2665 5.8023 -7.6432 22 1 -3.6287 5.4581 -7.1624 23 1 -2.2906 7.1434 -8.2803 24 1 -1.8215 4.7909 -8.6353 25 6 1.0090 2.5272 -5.1034 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.5542 2.2877 1.2056 30 1 3.5907 0.5103 1.2950 31 1 1.4457 0.5289 2.5389 32 1 1.4092 2.3061 2.4495 33 1 2.6833 1.4878 3.3853 34 1 3.5541 2.2878 -1.2056 35 1 3.5906 0.5105 -1.2953 36 1 2.3308 -0.5802 -5.2548 37 1 0.8065 -0.7109 -7.1816 38 1 -0.5817 1.2268 -7.7906 39 1 -1.3561 7.7421 -5.7747 40 1 1.0656 3.4347 -4.5205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905949436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:16 Heat of formation + Delta-G solvation = -68.463777 kcal Electronic energy + Delta-G solvation = -22638.721085 eV Core-core repulsion = 19192.189129 eV Total energy + Delta-G solvation = -3446.531956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92272 -39.04687 -37.81869 -36.45425 -35.69381 -32.41631 -31.84774 -30.94245 -29.63322 -29.10917 -25.60001 -25.16643 -22.72189 -21.76284 -21.53362 -20.49744 -19.59674 -18.11400 -18.01762 -16.95901 -16.21611 -15.92667 -15.31338 -15.16449 -14.66699 -14.52584 -14.15870 -13.96599 -13.80999 -13.53495 -13.28989 -13.01362 -12.57262 -12.28653 -12.27038 -12.06890 -11.64177 -11.53116 -11.34936 -11.31485 -11.10639 -10.97121 -10.80731 -10.62113 -10.41134 -10.30882 -10.19495 -9.53670 -9.19841 -8.91296 -8.22842 -7.50175 -6.44865 -4.12484 1.71169 2.11264 2.38439 2.46922 3.11082 3.21190 3.24403 3.38005 4.20890 4.37676 4.58796 4.62676 4.72188 4.81236 5.05885 5.08760 5.11984 5.24021 5.29951 5.35397 5.50673 5.53739 5.67196 5.71981 5.74691 5.81776 5.87538 5.96210 6.07879 6.08588 6.15490 6.31332 6.39822 6.70793 6.87742 6.90189 6.95743 7.03933 7.08066 7.45040 7.72199 7.96500 8.21048 8.89327 9.48318 10.62557 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.004131 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.799458 B = 6777.179170 C = 7778.839186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.162 4.162 3 C -0.051 4.051 4 H 0.086 0.914 5 C -0.114 4.114 6 C -0.151 4.151 7 C -0.103 4.103 8 C 0.450 3.550 9 O -0.474 6.474 10 O -0.301 6.301 11 C 0.123 3.877 12 C -0.205 4.205 13 C -0.066 4.066 14 C -0.189 4.189 15 C 0.170 3.830 16 O -0.211 6.211 17 C -0.391 4.391 18 H 0.105 0.895 19 C 0.065 3.935 20 N -0.876 5.876 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.258 1.258 25 C -0.218 4.218 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.280 0.720 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -12.782 9.953 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.180 4.180 3 C -0.069 4.069 4 H 0.104 0.896 5 C -0.151 4.151 6 C -0.209 4.209 7 C -0.141 4.141 8 C 0.292 3.708 9 O -0.358 6.358 10 O -0.216 6.216 11 C 0.082 3.918 12 C -0.224 4.224 13 C -0.085 4.085 14 C -0.208 4.208 15 C 0.118 3.882 16 O -0.115 6.115 17 C -0.467 4.467 18 H 0.122 0.878 19 C -0.138 4.138 20 N -0.514 5.514 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.182 1.182 25 C -0.238 4.238 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.090 0.910 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.090 -12.479 9.840 17.402 hybrid contribution -0.496 0.241 -0.550 0.778 sum 6.594 -12.238 9.290 16.720 Atomic orbital electron populations 1.23786 0.95952 1.01647 0.98185 1.22648 0.96049 0.97006 1.02273 1.20277 0.96829 0.97535 0.92292 0.89592 1.21510 0.97785 1.02161 0.93680 1.21759 0.99851 1.02298 0.96969 1.21428 0.98012 1.05756 0.88872 1.24004 0.88907 0.73326 0.84518 1.90730 1.15957 1.42790 1.86311 1.84516 1.39841 1.83225 1.14055 1.18214 0.92792 0.93929 0.86856 1.20562 1.04701 0.96641 1.00539 1.20481 0.94735 0.97292 0.95960 1.20315 1.05320 0.92546 1.02603 1.18848 0.89266 0.88267 0.91855 1.83585 1.53020 1.18243 1.56680 1.20761 1.28428 0.84217 1.13273 0.87758 1.24468 0.97544 0.93435 0.98384 1.69646 1.41657 1.00250 1.39816 0.86166 0.80808 0.77800 0.82059 1.19783 1.20697 1.18249 1.21316 1.00952 0.99956 1.01557 0.88370 0.89039 0.87878 0.91520 0.91695 0.92387 0.92630 0.92857 0.87450 0.87713 0.86642 0.85878 0.85927 0.90951 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 13.23 29.01 0.38 -1.60 16 2 C -0.16 -1.83 6.76 -36.03 -0.24 -2.08 16 3 C -0.05 -0.55 1.82 -91.78 -0.17 -0.71 16 4 H 0.09 1.09 7.60 -51.93 -0.39 0.70 16 5 C -0.11 -0.93 5.39 -26.73 -0.14 -1.07 16 6 C -0.15 -1.23 9.73 37.16 0.36 -0.87 16 7 C -0.10 -1.13 5.28 -27.88 -0.15 -1.28 16 8 C 0.45 7.41 7.57 36.01 0.27 7.69 16 9 O -0.47 -9.34 13.60 -18.75 -0.26 -9.59 16 10 O -0.30 -5.44 10.03 -23.64 -0.24 -5.68 16 11 C 0.12 2.50 5.18 -39.24 -0.20 2.30 16 12 C -0.21 -3.68 9.99 -39.38 -0.39 -4.08 16 13 C -0.07 -1.14 10.03 -39.63 -0.40 -1.54 16 14 C -0.19 -3.78 9.99 -39.37 -0.39 -4.17 16 15 C 0.17 4.08 6.65 -39.13 -0.26 3.82 16 16 O -0.21 -5.67 8.58 0.05 0.00 -5.67 16 17 C -0.39 -11.30 9.95 30.88 0.31 -10.99 16 18 H 0.11 3.13 5.43 -52.49 -0.29 2.84 16 19 C 0.07 1.86 5.49 -17.52 -0.10 1.76 16 20 N -0.88 -25.56 13.96 55.48 0.77 -24.79 16 21 Si 0.91 21.79 28.62 -169.99 -4.86 16.92 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.22 -5.10 8.58 -39.25 -0.34 -5.43 16 26 H 0.10 1.35 7.83 -52.49 -0.41 0.93 16 27 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.14 3.44 5.64 -52.49 -0.30 3.15 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -31.78 343.08 -6.42 -38.20 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.56 Total: 3.70 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -1.46 Total: -18.26 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.77 Total: -24.79 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.49 Total: -20.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.78 -6.42 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905949436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.263 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds