Wall clock time and date at job start Tue Mar 31 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 120.00105 * 2 1 4 4 H 1.08998 * 109.47403 * 0.02562 * 3 2 1 5 5 C 1.52996 * 109.47148 * 120.00456 * 3 2 1 6 6 C 1.53006 * 109.47303 * 295.00032 * 5 3 2 7 7 C 1.52995 * 109.47281 * 240.00351 * 3 2 1 8 8 C 1.50702 * 109.47180 * 65.00456 * 7 3 2 9 9 O 1.20823 * 120.00089 * 359.97438 * 8 7 3 10 10 O 1.34264 * 119.99739 * 180.02562 * 8 7 3 11 11 C 1.35931 * 116.99568 * 175.01091 * 10 8 7 12 12 C 1.38828 * 120.01630 * 255.01825 * 11 10 8 13 13 C 1.38193 * 120.07645 * 179.72062 * 12 11 10 14 14 C 1.38152 * 120.12520 * 0.55283 * 13 12 11 15 15 C 1.38895 * 120.04082 * 359.72697 * 14 13 12 16 16 O 1.35745 * 120.04225 * 179.97438 * 15 14 13 17 17 C 1.34834 * 117.00404 * 185.61399 * 16 15 14 18 18 H 1.07996 * 119.99417 * 354.94164 * 17 16 15 19 19 C 1.38650 * 120.00290 * 174.93563 * 17 16 15 20 20 N 1.31553 * 119.99788 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00023 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46909 * 90.00003 * 21 19 17 23 23 H 1.48500 * 109.47134 * 209.99989 * 21 19 17 24 24 H 1.48499 * 109.46933 * 330.00208 * 21 19 17 25 25 C 1.38570 * 120.02377 * 75.29335 * 11 10 8 26 26 H 1.07999 * 119.99709 * 359.97438 * 1 2 3 27 27 H 1.07993 * 119.99976 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99709 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47556 * 175.00119 * 5 3 2 30 30 H 1.09006 * 109.47193 * 54.99801 * 5 3 2 31 31 H 1.09000 * 109.46744 * 59.99589 * 6 5 3 32 32 H 1.08994 * 109.47102 * 300.00367 * 6 5 3 33 33 H 1.08994 * 109.47664 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47437 * 185.00170 * 7 3 2 35 35 H 1.08999 * 109.47677 * 304.99866 * 7 3 2 36 36 H 1.08001 * 119.96134 * 359.97438 * 12 11 10 37 37 H 1.08007 * 119.93506 * 180.25602 * 13 12 11 38 38 H 1.08000 * 119.97797 * 179.70049 * 14 13 12 39 39 H 0.97003 * 120.00157 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.05973 * 359.97379 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3860 1.2491 6 6 2.0566 1.4305 2.4954 7 6 2.9431 1.3861 -1.2492 8 6 2.0697 1.4302 -2.4766 9 8 0.8671 1.3994 -2.3637 10 8 2.6279 1.5027 -3.6955 11 6 1.7895 1.4339 -4.7632 12 6 1.7189 0.2703 -5.5170 13 6 0.8627 0.1970 -6.5992 14 6 0.0830 1.2850 -6.9414 15 6 0.1539 2.4537 -6.1943 16 8 -0.6118 3.5229 -6.5307 17 6 -0.4108 4.6621 -5.8381 18 1 0.2735 4.6724 -5.0027 19 6 -1.0825 5.8203 -6.1985 20 7 -0.8859 6.9319 -5.5229 21 14 -2.2665 5.8023 -7.6432 22 1 -3.6287 5.4581 -7.1624 23 1 -2.2906 7.1434 -8.2803 24 1 -1.8215 4.7909 -8.6353 25 6 1.0090 2.5272 -5.1034 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.5542 2.2877 1.2056 30 1 3.5907 0.5103 1.2950 31 1 1.4457 0.5289 2.5389 32 1 1.4092 2.3061 2.4495 33 1 2.6833 1.4878 3.3853 34 1 3.5541 2.2878 -1.2056 35 1 3.5906 0.5105 -1.2953 36 1 2.3308 -0.5802 -5.2548 37 1 0.8065 -0.7109 -7.1816 38 1 -0.5817 1.2268 -7.7906 39 1 -1.3561 7.7421 -5.7747 40 1 1.0656 3.4347 -4.5205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905949436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:15 Heat of formation + Delta-G solvation = -86.001176 kcal Electronic energy + Delta-G solvation = -22639.481564 eV Core-core repulsion = 19192.189129 eV Total energy + Delta-G solvation = -3447.292435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.35922 -40.74706 -39.13945 -37.79364 -37.14560 -34.52592 -32.67423 -32.05903 -31.15788 -30.70113 -27.43771 -26.41269 -24.08368 -23.22747 -22.57309 -21.93484 -20.52279 -20.04108 -19.67734 -18.37601 -17.71976 -17.39169 -16.99971 -16.38148 -15.96531 -15.81292 -15.69172 -15.54114 -15.04001 -14.89262 -14.54012 -14.46157 -14.21071 -14.02436 -13.25481 -13.15735 -13.05789 -12.90608 -12.83509 -12.54067 -12.27678 -12.13206 -12.11060 -11.93184 -11.79832 -11.69888 -11.49983 -11.37383 -10.97742 -10.15783 -9.82512 -9.25563 -8.56904 -6.32284 0.12611 0.48862 1.12681 1.28186 1.33684 1.46991 1.49180 1.78350 2.23713 2.67512 2.90910 3.04783 3.59463 3.72370 3.78743 3.97642 4.14167 4.25919 4.27985 4.32936 4.42409 4.43687 4.49336 4.58673 4.68130 4.79148 4.87359 4.93408 5.02079 5.03800 5.17725 5.23625 5.35349 5.35907 5.41844 5.44889 5.52069 5.62902 5.74913 5.79689 5.99171 6.06422 6.75526 6.79846 7.44430 8.55047 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.004131 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.799458 B = 6777.179170 C = 7778.839186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.053 4.053 4 H 0.053 0.947 5 C -0.107 4.107 6 C -0.153 4.153 7 C -0.094 4.094 8 C 0.443 3.557 9 O -0.514 6.514 10 O -0.301 6.301 11 C 0.112 3.888 12 C -0.184 4.184 13 C -0.049 4.049 14 C -0.186 4.186 15 C 0.133 3.867 16 O -0.235 6.235 17 C -0.406 4.406 18 H 0.069 0.931 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.977 3.023 22 H -0.265 1.265 23 H -0.264 1.264 24 H -0.257 1.257 25 C -0.245 4.245 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.145 0.855 39 H 0.287 0.713 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 -16.309 9.166 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.168 4.168 3 C -0.071 4.071 4 H 0.072 0.928 5 C -0.144 4.144 6 C -0.211 4.211 7 C -0.131 4.131 8 C 0.288 3.712 9 O -0.400 6.400 10 O -0.217 6.217 11 C 0.071 3.929 12 C -0.203 4.203 13 C -0.066 4.066 14 C -0.205 4.205 15 C 0.083 3.917 16 O -0.142 6.142 17 C -0.483 4.483 18 H 0.087 0.913 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.798 3.202 22 H -0.190 1.190 23 H -0.188 1.188 24 H -0.181 1.181 25 C -0.265 4.265 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.198 0.802 38 H 0.163 0.837 39 H 0.097 0.903 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.749 -16.041 9.071 20.399 hybrid contribution -0.807 1.068 -0.187 1.352 sum 7.941 -14.973 8.884 19.136 Atomic orbital electron populations 1.23772 0.96817 1.00984 1.00576 1.22931 0.95694 0.98169 1.00054 1.20314 0.96827 0.96233 0.93753 0.92812 1.21493 0.97395 1.03817 0.91684 1.21774 0.99961 1.01429 0.97890 1.21669 0.97434 1.08497 0.85504 1.25240 0.89265 0.71709 0.84949 1.90731 1.18012 1.44696 1.86534 1.84544 1.39435 1.83397 1.14319 1.18464 0.92469 0.93907 0.88089 1.21169 1.03716 0.96305 0.99105 1.21148 0.92213 0.97997 0.95254 1.20774 1.05670 0.91558 1.02449 1.19479 0.90069 0.88948 0.93198 1.83518 1.55072 1.18311 1.57323 1.20626 1.28587 0.85882 1.13160 0.91314 1.25369 0.99272 0.92728 1.01329 1.69736 1.43465 1.01076 1.41881 0.85141 0.78275 0.78497 0.78321 1.19033 1.18797 1.18064 1.21240 1.03140 1.00075 1.02011 0.91016 0.87981 0.85312 0.90428 0.89339 0.92853 0.94083 0.91232 0.85335 0.83824 0.82415 0.80171 0.83745 0.90335 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.73 13.23 67.78 0.90 -3.84 16 2 C -0.15 -3.23 6.76 25.64 0.17 -3.06 16 3 C -0.05 -1.08 1.82 -11.54 -0.02 -1.10 16 4 H 0.05 1.45 7.60 -2.39 -0.02 1.43 16 5 C -0.11 -1.47 5.39 30.59 0.16 -1.31 16 6 C -0.15 -2.32 9.73 71.98 0.70 -1.62 16 7 C -0.09 -1.86 5.28 29.85 0.16 -1.70 16 8 C 0.44 14.49 7.57 71.24 0.54 15.03 16 9 O -0.51 -20.99 13.60 21.97 0.30 -20.69 16 10 O -0.30 -10.70 10.03 4.46 0.04 -10.66 16 11 C 0.11 4.50 5.18 22.49 0.12 4.62 16 12 C -0.18 -5.90 9.99 22.40 0.22 -5.67 16 13 C -0.05 -1.44 10.03 22.24 0.22 -1.22 16 14 C -0.19 -7.06 9.99 22.41 0.22 -6.84 16 15 C 0.13 6.55 6.65 22.56 0.15 6.70 16 16 O -0.24 -13.28 8.58 -22.72 -0.20 -13.47 16 17 C -0.41 -25.23 9.95 67.92 0.68 -24.55 16 18 H 0.07 4.60 5.43 -2.91 -0.02 4.59 16 19 C 0.01 0.70 5.49 84.83 0.47 1.17 16 20 N -0.92 -56.70 13.96 21.61 0.30 -56.40 16 21 Si 0.98 46.19 28.62 68.60 1.96 48.15 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 C -0.24 -12.08 8.58 22.48 0.19 -11.89 16 26 H 0.07 2.18 7.83 -2.91 -0.02 2.16 16 27 H 0.10 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.85 7.38 -2.39 -0.02 0.83 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 38 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.29 16.05 8.31 -92.71 -0.77 15.28 16 40 H 0.10 5.52 5.64 -2.91 -0.02 5.50 16 Total: -1.00 -76.85 343.08 8.32 -68.53 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.03 Total: 19.82 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 4.88 Total: -35.28 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.30 Total: -56.40 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: 0.15 Total: -44.82 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.96 Total: 48.15 kcal Total: -76.85 8.32 -68.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905949436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.468 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds