Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35726 * 117.00129 * 2 1 4 4 C 1.39031 * 119.88698 * 179.97438 * 3 2 1 5 5 C 1.37656 * 120.11556 * 179.97438 * 4 3 2 6 6 C 1.39993 * 119.88187 * 359.97438 * 5 4 3 7 7 C 1.46957 * 120.11207 * 179.97438 * 6 5 4 8 8 C 1.35088 * 120.00029 * 136.15965 * 7 6 5 9 9 C 1.41784 * 120.00073 * 348.48100 * 8 7 6 10 10 O 1.21644 * 120.00063 * 353.14754 * 9 8 7 11 11 O 1.34931 * 120.00046 * 173.14063 * 9 8 7 12 12 C 1.42900 * 116.99940 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46970 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46716 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46621 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00519 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00039 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47238 * 60.00444 * 19 17 15 21 21 H 1.48507 * 109.46829 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00222 * 19 17 15 23 23 C 1.39987 * 119.77401 * 0.27143 * 6 5 4 24 24 C 1.37653 * 119.88461 * 359.46728 * 23 6 5 25 25 H 1.09000 * 109.47342 * 60.00330 * 1 2 3 26 26 H 1.08999 * 109.47472 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47293 * 300.00385 * 1 2 3 28 28 H 1.07996 * 119.94188 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.05467 * 179.97438 * 5 4 3 30 30 H 1.08004 * 120.00050 * 316.16259 * 7 6 5 31 31 H 1.08006 * 119.99932 * 168.47731 * 8 7 6 32 32 H 1.08992 * 109.47125 * 300.00444 * 12 11 9 33 33 H 1.09000 * 109.46735 * 60.00480 * 12 11 9 34 34 H 1.09000 * 109.47209 * 300.00109 * 13 12 11 35 35 H 1.08994 * 109.47065 * 60.00135 * 13 12 11 36 36 H 1.09000 * 109.47189 * 299.99899 * 14 13 12 37 37 H 1.09000 * 109.47043 * 60.00353 * 14 13 12 38 38 H 0.96999 * 119.99812 * 179.97438 * 18 17 15 39 39 H 1.08008 * 120.05913 * 179.72684 * 23 6 5 40 40 H 1.07999 * 119.95003 * 180.23540 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4337 1.2793 0.0005 5 6 4.0636 2.5033 0.0000 6 6 3.3034 3.6789 -0.0016 7 6 3.9706 4.9883 -0.0016 8 6 3.5263 5.9727 -0.8131 9 6 2.5856 5.6804 -1.8328 10 8 2.2726 4.5269 -2.0591 11 8 2.0375 6.6818 -2.5522 12 6 1.0975 6.3146 -3.5639 13 6 0.5882 7.5739 -4.2682 14 6 -0.4186 7.1807 -5.3510 15 6 -0.9197 8.4209 -6.0450 16 1 -0.5567 9.3925 -5.7436 17 6 -1.8417 8.3155 -7.0648 18 7 -2.2834 7.1324 -7.4321 19 14 -2.4633 9.8529 -7.9246 20 1 -1.3205 10.5684 -8.5469 21 1 -3.4396 9.4712 -8.9766 22 1 -3.1236 10.7411 -6.9345 23 6 1.9056 3.6028 0.0031 24 6 1.2856 2.3739 -0.0019 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 4.0192 0.3718 0.0014 29 1 5.1423 2.5565 0.0008 30 1 4.8161 5.1636 0.6471 31 1 3.8878 6.9824 -0.6850 32 1 1.5821 5.6630 -4.2908 33 1 0.2589 5.7890 -3.1071 34 1 0.1037 8.2258 -3.5414 35 1 1.4270 8.0990 -4.7249 36 1 0.0656 6.5285 -6.0778 37 1 -1.2574 6.6557 -4.8938 38 1 -2.9323 7.0583 -8.1493 39 1 1.3147 4.5069 0.0063 40 1 0.2073 2.3140 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912956717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = -82.669534 kcal Electronic energy + Delta-G solvation = -21876.253076 eV Core-core repulsion = 18429.105112 eV Total energy + Delta-G solvation = -3447.147964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70492 -39.95957 -37.93614 -36.40619 -33.95024 -33.72594 -31.68290 -31.21657 -29.67513 -27.61339 -26.99054 -24.69102 -23.12424 -22.52985 -21.70565 -20.38659 -19.37179 -18.38536 -17.77037 -16.64806 -16.45289 -16.09099 -15.98967 -15.88972 -14.88427 -14.52893 -14.37426 -14.20895 -13.96907 -13.72833 -13.41516 -13.02353 -12.74372 -12.20656 -12.16800 -12.09444 -11.92935 -11.68388 -11.39908 -10.99823 -10.93861 -10.65275 -10.59453 -10.28611 -10.22085 -9.85877 -9.66174 -9.49080 -9.16395 -8.98556 -8.37830 -7.90456 -6.02789 -4.05813 0.44460 1.32055 1.66681 3.09526 3.11093 3.20054 3.32675 3.36861 3.39825 3.70253 4.44099 4.53296 4.64303 4.72430 4.88847 4.96122 4.99448 5.15622 5.24902 5.26590 5.32994 5.33846 5.54148 5.62143 5.68937 5.75669 5.85548 5.93608 6.07047 6.18557 6.27991 6.43484 6.57062 6.58616 6.59856 6.91307 7.02040 7.22935 7.61356 7.73044 7.95571 8.05301 8.37298 9.00328 9.58296 11.08656 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.002853 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.951067 B = 9812.569776 C =10972.840063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.319 6.319 3 C 0.141 3.859 4 C -0.167 4.167 5 C -0.056 4.056 6 C -0.121 4.121 7 C 0.003 3.997 8 C -0.204 4.204 9 C 0.484 3.516 10 O -0.501 6.501 11 O -0.352 6.352 12 C 0.068 3.932 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.001 3.999 24 C -0.215 4.215 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.592 -10.412 19.429 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.096 3.904 4 C -0.186 4.186 5 C -0.074 4.074 6 C -0.121 4.121 7 C -0.015 4.015 8 C -0.223 4.223 9 C 0.331 3.669 10 O -0.392 6.392 11 O -0.269 6.269 12 C -0.006 4.006 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.018 4.018 24 C -0.234 4.234 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.410 -11.021 19.187 24.896 hybrid contribution -0.788 0.917 -0.789 1.444 sum 10.622 -10.104 18.398 23.525 Atomic orbital electron populations 1.23084 0.78181 1.03921 1.01712 1.86001 1.21611 1.27220 1.88352 1.19205 0.92361 0.83991 0.94879 1.20196 0.91184 0.98464 1.08708 1.20935 0.99284 0.90636 0.96541 1.18793 0.93338 0.92793 1.07221 1.22489 0.94707 0.90734 0.93567 1.21475 1.01720 1.01354 0.97766 1.20166 0.80444 0.83845 0.82446 1.90958 1.59873 1.21110 1.67272 1.86218 1.55136 1.38655 1.46853 1.23028 0.89748 1.00126 0.87678 1.21754 0.99985 0.94358 0.98481 1.19040 0.92895 0.97248 0.92078 1.21151 1.24320 0.93009 1.17554 0.92491 1.25032 0.96382 0.96071 0.96978 1.69957 1.31313 1.22678 1.29461 0.86606 0.78650 0.83213 0.79234 1.20172 1.21260 1.20179 1.20870 0.93126 0.96857 0.90900 1.21070 1.00039 0.92167 1.10109 0.92258 0.88243 0.92608 0.85293 0.85279 0.83944 0.83804 0.91919 0.92025 0.92257 0.92216 0.96287 0.96329 0.92852 0.86552 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.70 10.48 -18.88 -0.20 -3.90 16 3 C 0.14 1.75 6.70 -38.99 -0.26 1.49 16 4 C -0.17 -1.88 9.97 -39.50 -0.39 -2.28 16 5 C -0.06 -0.58 9.79 -39.14 -0.38 -0.97 16 6 C -0.12 -1.40 4.46 -105.05 -0.47 -1.87 16 7 C 0.00 0.03 9.79 -37.17 -0.36 -0.33 16 8 C -0.20 -2.25 9.84 -39.35 -0.39 -2.63 16 9 C 0.48 7.43 6.77 32.09 0.22 7.65 16 10 O -0.50 -8.75 11.85 -19.38 -0.23 -8.98 16 11 O -0.35 -6.05 10.10 -41.13 -0.42 -6.47 16 12 C 0.07 1.29 5.38 37.16 0.20 1.49 16 13 C -0.11 -2.30 5.52 -26.73 -0.15 -2.45 16 14 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.00 0.01 6.65 -39.14 -0.26 -0.25 16 24 C -0.22 -2.69 9.01 -39.50 -0.36 -3.05 16 25 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.12 1.51 7.09 -52.48 -0.37 1.13 16 40 H 0.13 1.39 6.27 -52.49 -0.33 1.06 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -33.34 343.72 -7.80 -41.14 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.69 Total: -2.19 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.16 Total: -15.14 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.84 Total: -19.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.34 -7.80 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912956717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.527 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds