Wall clock time and date at job start Tue Mar 31 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99673 * 2 1 4 4 O 1.42908 * 109.46785 * 134.99579 * 3 2 1 5 5 C 1.35638 * 116.99244 * 179.97438 * 4 3 2 6 6 C 1.38702 * 120.15986 * 0.02562 * 5 4 3 7 7 C 1.38060 * 120.08999 * 180.02562 * 6 5 4 8 8 C 1.38557 * 120.40270 * 359.95400 * 7 6 5 9 9 C 1.37765 * 120.31024 * 359.97438 * 8 7 6 10 10 C 1.39768 * 119.90177 * 0.02655 * 9 8 7 11 11 C 1.47397 * 120.19768 * 179.97438 * 10 9 8 12 12 O 1.21508 * 119.99935 * 179.97438 * 11 10 9 13 13 O 1.34749 * 120.00301 * 359.97438 * 11 10 9 14 14 C 1.45201 * 117.00645 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47500 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47205 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47207 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00031 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99875 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00226 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99633 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47101 * 60.00223 * 21 19 17 23 23 H 1.48505 * 109.46676 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47243 * 300.00175 * 21 19 17 25 25 H 1.07999 * 119.99987 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00176 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00176 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47181 * 14.99544 * 3 2 1 29 29 H 1.08993 * 109.46903 * 254.99305 * 3 2 1 30 30 H 1.07999 * 119.96005 * 0.02562 * 6 5 4 31 31 H 1.08003 * 119.79445 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.84975 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.05205 * 179.74518 * 9 8 7 34 34 H 1.08999 * 109.46670 * 300.00136 * 14 13 11 35 35 H 1.08997 * 109.46998 * 59.99488 * 14 13 11 36 36 H 1.09002 * 109.46817 * 300.00103 * 15 14 13 37 37 H 1.08992 * 109.47171 * 59.99811 * 15 14 13 38 38 H 1.08999 * 109.46950 * 299.99898 * 16 15 14 39 39 H 1.09005 * 109.46858 * 59.99705 * 16 15 14 40 40 H 0.96997 * 120.00484 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9080 2.3430 1.0780 6 6 3.6597 3.4653 0.3018 7 6 4.4563 4.5856 0.4301 8 6 5.5070 4.5993 1.3332 9 6 5.7675 3.4942 2.1135 10 6 4.9693 2.3531 1.9941 11 6 5.2425 1.1669 2.8253 12 8 4.5460 0.1770 2.7190 13 8 6.2647 1.1802 3.7032 14 6 6.4755 -0.0230 4.4881 15 6 7.6706 0.1797 5.4216 16 6 7.8923 -1.0880 6.2490 17 6 9.0698 -0.8885 7.1681 18 1 9.6062 0.0489 7.1628 19 6 9.4617 -1.9023 8.0164 20 7 8.8083 -3.0436 8.0231 21 14 10.9218 -1.6552 9.1550 22 1 10.6534 -0.5113 10.0631 23 1 11.1368 -2.8857 9.9583 24 1 12.1363 -1.3726 8.3485 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3854 2.1161 0.2659 29 1 2.4755 1.4868 -0.9926 30 1 2.8422 3.4630 -0.4039 31 1 4.2590 5.4568 -0.1770 32 1 6.1243 5.4806 1.4265 33 1 6.5902 3.5079 2.8131 34 1 5.5841 -0.2316 5.0797 35 1 6.6733 -0.8620 3.8209 36 1 8.5622 0.3886 4.8302 37 1 7.4724 1.0185 6.0887 38 1 7.0006 -1.2964 6.8403 39 1 8.0903 -1.9271 5.5821 40 1 9.0842 -3.7569 8.6196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914627075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:55 Heat of formation + Delta-G solvation = -89.144254 kcal Electronic energy + Delta-G solvation = -21739.516229 eV Core-core repulsion = 18292.087500 eV Total energy + Delta-G solvation = -3447.428729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79589 -39.50290 -37.77591 -36.18543 -34.37920 -33.92468 -31.97073 -31.35513 -30.24642 -27.23334 -26.82284 -24.54791 -23.07014 -22.34584 -20.98999 -20.30723 -20.06424 -18.52130 -17.47812 -16.85184 -16.49715 -16.25996 -16.00129 -15.74715 -15.07993 -14.85945 -14.53697 -14.43898 -14.00338 -13.58399 -13.13036 -12.99446 -12.83686 -12.21799 -12.03969 -11.97664 -11.77472 -11.66136 -11.53621 -11.27738 -10.91814 -10.64151 -10.57410 -10.27609 -10.18376 -9.85677 -9.65780 -9.45785 -9.35357 -9.13971 -8.54200 -8.35476 -6.00339 -4.03356 0.57396 1.11090 1.71632 2.67945 2.95642 3.02201 3.34541 3.38668 3.41375 3.60365 4.33604 4.45459 4.51471 4.55135 4.67478 4.77118 4.83203 4.96020 5.08146 5.09220 5.30238 5.35420 5.49233 5.57190 5.66590 5.73166 5.84904 5.96560 6.09255 6.14880 6.19696 6.23851 6.42232 6.57922 6.60222 6.92709 7.03788 7.09290 7.64150 7.75946 7.98088 8.10788 8.39612 9.02772 9.60621 11.11136 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021098 B = 0.002769 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.809281 B =10109.848484 C =11379.805452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.151 4.151 3 C 0.081 3.919 4 O -0.276 6.276 5 C 0.189 3.811 6 C -0.228 4.228 7 C -0.047 4.047 8 C -0.174 4.174 9 C -0.022 4.022 10 C -0.157 4.157 11 C 0.501 3.499 12 O -0.492 6.492 13 O -0.357 6.357 14 C 0.071 3.929 15 C -0.108 4.108 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 15.033 -19.402 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.006 3.994 4 O -0.188 6.188 5 C 0.141 3.859 6 C -0.246 4.246 7 C -0.065 4.065 8 C -0.192 4.192 9 C -0.040 4.040 10 C -0.159 4.159 11 C 0.345 3.655 12 O -0.380 6.380 13 O -0.275 6.275 14 C -0.002 4.002 15 C -0.146 4.146 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.238 14.317 -19.213 27.872 hybrid contribution 0.607 0.022 0.499 0.786 sum -13.631 14.340 -18.714 27.233 Atomic orbital electron populations 1.23856 0.95336 1.02515 0.99338 1.22663 0.95631 0.97882 1.00721 1.21950 0.88037 0.97241 0.92191 1.86399 1.40983 1.34187 1.57206 1.19007 0.88863 0.86122 0.91905 1.21184 1.04748 0.94146 1.04552 1.21178 0.92851 0.96924 0.95592 1.21074 0.99986 0.99321 0.98812 1.21460 0.96353 0.90330 0.95867 1.18629 0.99955 0.95381 1.01899 1.20773 0.78797 0.87115 0.78830 1.90871 1.47412 1.33933 1.65797 1.86517 1.48089 1.43561 1.49300 1.23472 1.00509 0.83561 0.92686 1.21756 0.94228 1.02121 0.96486 1.19047 0.97247 0.90846 0.94168 1.21142 1.13938 1.00039 1.20851 0.92484 1.25030 0.96970 0.95192 0.97280 1.69954 1.40446 1.04442 1.38557 0.86608 0.82916 0.77430 0.80753 1.20185 1.21283 1.20189 0.87345 0.88364 0.85925 0.91337 0.90856 0.84743 0.85196 0.84938 0.83440 0.91563 0.91557 0.92165 0.92168 0.96231 0.96236 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 14.31 29.01 0.42 -0.83 16 2 C -0.15 -1.37 9.89 -36.02 -0.36 -1.73 16 3 C 0.08 0.73 5.15 36.01 0.19 0.92 16 4 O -0.28 -3.78 8.19 -40.50 -0.33 -4.11 16 5 C 0.19 2.40 6.70 -38.67 -0.26 2.14 16 6 C -0.23 -2.06 9.03 -39.48 -0.36 -2.42 16 7 C -0.05 -0.37 10.03 -39.53 -0.40 -0.76 16 8 C -0.17 -1.49 10.02 -39.64 -0.40 -1.89 16 9 C -0.02 -0.25 9.61 -39.18 -0.38 -0.62 16 10 C -0.16 -2.22 5.89 -104.86 -0.62 -2.84 16 11 C 0.50 8.85 7.89 34.46 0.27 9.12 16 12 O -0.49 -9.98 14.95 -26.60 -0.40 -10.37 16 13 O -0.36 -6.44 9.47 -40.62 -0.38 -6.83 16 14 C 0.07 1.38 5.48 37.16 0.20 1.59 16 15 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 21 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 26 H 0.10 0.56 7.90 -52.49 -0.41 0.15 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.07 0.50 7.38 -51.93 -0.38 0.11 16 29 H 0.07 0.52 7.66 -51.93 -0.40 0.13 16 30 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 31 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.15 1.56 7.61 -52.48 -0.40 1.16 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -33.73 349.81 -8.20 -41.93 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.69 Total: -3.23 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.38 Total: -12.96 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.11 Total: -21.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.73 -8.20 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914627075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.215 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds