Wall clock time and date at job start Tue Mar 31 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99673 * 2 1 4 4 O 1.42908 * 109.46785 * 134.99579 * 3 2 1 5 5 C 1.35638 * 116.99244 * 179.97438 * 4 3 2 6 6 C 1.38702 * 120.15986 * 0.02562 * 5 4 3 7 7 C 1.38060 * 120.08999 * 180.02562 * 6 5 4 8 8 C 1.38557 * 120.40270 * 359.95400 * 7 6 5 9 9 C 1.37765 * 120.31024 * 359.97438 * 8 7 6 10 10 C 1.39768 * 119.90177 * 0.02655 * 9 8 7 11 11 C 1.47397 * 120.19768 * 179.97438 * 10 9 8 12 12 O 1.21508 * 119.99935 * 179.97438 * 11 10 9 13 13 O 1.34749 * 120.00301 * 359.97438 * 11 10 9 14 14 C 1.45201 * 117.00645 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47500 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47205 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47207 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00031 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99875 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00226 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99633 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47101 * 60.00223 * 21 19 17 23 23 H 1.48505 * 109.46676 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47243 * 300.00175 * 21 19 17 25 25 H 1.07999 * 119.99987 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00176 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00176 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47181 * 14.99544 * 3 2 1 29 29 H 1.08993 * 109.46903 * 254.99305 * 3 2 1 30 30 H 1.07999 * 119.96005 * 0.02562 * 6 5 4 31 31 H 1.08003 * 119.79445 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.84975 * 180.02562 * 8 7 6 33 33 H 1.08004 * 120.05205 * 179.74518 * 9 8 7 34 34 H 1.08999 * 109.46670 * 300.00136 * 14 13 11 35 35 H 1.08997 * 109.46998 * 59.99488 * 14 13 11 36 36 H 1.09002 * 109.46817 * 300.00103 * 15 14 13 37 37 H 1.08992 * 109.47171 * 59.99811 * 15 14 13 38 38 H 1.08999 * 109.46950 * 299.99898 * 16 15 14 39 39 H 1.09005 * 109.46858 * 59.99705 * 16 15 14 40 40 H 0.96997 * 120.00484 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9080 2.3430 1.0780 6 6 3.6597 3.4653 0.3018 7 6 4.4563 4.5856 0.4301 8 6 5.5070 4.5993 1.3332 9 6 5.7675 3.4942 2.1135 10 6 4.9693 2.3531 1.9941 11 6 5.2425 1.1669 2.8253 12 8 4.5460 0.1770 2.7190 13 8 6.2647 1.1802 3.7032 14 6 6.4755 -0.0230 4.4881 15 6 7.6706 0.1797 5.4216 16 6 7.8923 -1.0880 6.2490 17 6 9.0698 -0.8885 7.1681 18 1 9.6062 0.0489 7.1628 19 6 9.4617 -1.9023 8.0164 20 7 8.8083 -3.0436 8.0231 21 14 10.9218 -1.6552 9.1550 22 1 10.6534 -0.5113 10.0631 23 1 11.1368 -2.8857 9.9583 24 1 12.1363 -1.3726 8.3485 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3854 2.1161 0.2659 29 1 2.4755 1.4868 -0.9926 30 1 2.8422 3.4630 -0.4039 31 1 4.2590 5.4568 -0.1770 32 1 6.1243 5.4806 1.4265 33 1 6.5902 3.5079 2.8131 34 1 5.5841 -0.2316 5.0797 35 1 6.6733 -0.8620 3.8209 36 1 8.5622 0.3886 4.8302 37 1 7.4724 1.0185 6.0887 38 1 7.0006 -1.2964 6.8403 39 1 8.0903 -1.9271 5.5821 40 1 9.0842 -3.7569 8.6196 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914627075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:54 Heat of formation + Delta-G solvation = -107.311156 kcal Electronic energy + Delta-G solvation = -21740.304005 eV Core-core repulsion = 18292.087500 eV Total energy + Delta-G solvation = -3448.216505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.82666 -40.70002 -38.56602 -37.69208 -35.93310 -35.03441 -33.74789 -32.48241 -31.00922 -29.05281 -27.61303 -25.90929 -24.62394 -23.19773 -22.18832 -22.06329 -20.82947 -19.41161 -18.76830 -18.44430 -17.75735 -17.68253 -17.13242 -16.75971 -16.48615 -15.84920 -15.69751 -15.51373 -15.37388 -14.61792 -14.36561 -14.06123 -13.90717 -13.77653 -13.70093 -13.43944 -12.82729 -12.79407 -12.53224 -12.42976 -12.34002 -12.22512 -12.06782 -11.98299 -11.70976 -11.42656 -11.38561 -11.21516 -10.57385 -10.48323 -10.15395 -9.33380 -8.21869 -6.34014 -0.31851 0.36363 1.08037 1.41019 1.45088 1.52592 1.52634 1.61622 2.29797 2.41508 2.74071 3.11717 3.57324 3.72474 3.83090 3.97208 3.97926 4.05223 4.06897 4.17288 4.31192 4.34771 4.38934 4.46300 4.49696 4.77711 4.78308 4.89797 4.93208 5.06056 5.12697 5.27933 5.38893 5.44442 5.50196 5.56779 5.61554 5.61989 5.74893 5.78929 6.18095 6.33051 6.72429 6.81806 7.35485 8.90419 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021098 B = 0.002769 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.809281 B =10109.848484 C =11379.805452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.184 4.184 3 C 0.076 3.924 4 O -0.314 6.314 5 C 0.172 3.828 6 C -0.222 4.222 7 C -0.029 4.029 8 C -0.167 4.167 9 C -0.030 4.030 10 C -0.195 4.195 11 C 0.496 3.504 12 O -0.531 6.531 13 O -0.354 6.354 14 C 0.080 3.920 15 C -0.091 4.091 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.067 0.933 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.265 1.265 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.068 0.932 38 H -0.005 1.005 39 H -0.005 1.005 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 18.467 -20.660 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.202 4.202 3 C 0.003 3.997 4 O -0.227 6.227 5 C 0.124 3.876 6 C -0.241 4.241 7 C -0.047 4.047 8 C -0.185 4.185 9 C -0.048 4.048 10 C -0.197 4.197 11 C 0.343 3.657 12 O -0.422 6.422 13 O -0.271 6.271 14 C 0.006 3.994 15 C -0.129 4.129 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.189 1.189 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.182 0.818 31 H 0.192 0.808 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.251 17.780 -20.488 30.643 hybrid contribution 0.493 -0.989 0.780 1.353 sum -13.759 16.791 -19.708 29.320 Atomic orbital electron populations 1.24101 0.94622 1.03921 0.96468 1.22687 0.96492 0.97535 1.03469 1.22200 0.87523 0.97698 0.92312 1.86352 1.42212 1.35421 1.58680 1.19310 0.88654 0.87150 0.92445 1.21560 1.05565 0.93035 1.03918 1.21735 0.91030 0.97486 0.94460 1.21472 1.00304 0.99065 0.97644 1.21570 0.96090 0.90455 0.96714 1.18676 1.02629 0.94976 1.03451 1.21596 0.77684 0.88075 0.78333 1.90839 1.48622 1.35672 1.67027 1.86503 1.48803 1.42275 1.49514 1.23116 0.99493 0.84235 0.92519 1.21449 0.95271 0.99775 0.96363 1.18931 0.95861 0.92371 0.93934 1.21592 1.14616 1.00602 1.21372 0.91498 1.26049 1.00198 0.94715 0.99062 1.70101 1.42356 1.05463 1.39581 0.85409 0.78956 0.77680 0.78453 1.18929 1.20921 1.18945 0.86531 0.86285 0.88029 0.89193 0.89057 0.81770 0.80839 0.81777 0.83581 0.92318 0.92301 0.91274 0.91281 0.98629 0.98634 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 14.31 67.78 0.97 -1.08 16 2 C -0.18 -3.40 9.89 25.65 0.25 -3.15 16 3 C 0.08 1.33 5.15 71.24 0.37 1.70 16 4 O -0.31 -8.82 8.19 -68.59 -0.56 -9.39 16 5 C 0.17 4.29 6.70 22.86 0.15 4.44 16 6 C -0.22 -3.33 9.03 22.34 0.20 -3.13 16 7 C -0.03 -0.32 10.03 22.30 0.22 -0.09 16 8 C -0.17 -2.27 10.02 22.23 0.22 -2.05 16 9 C -0.03 -0.65 9.61 22.53 0.22 -0.43 16 10 C -0.20 -5.63 5.89 -20.02 -0.12 -5.74 16 11 C 0.50 18.52 7.89 70.23 0.55 19.07 16 12 O -0.53 -23.11 14.95 26.81 0.40 -22.71 16 13 O -0.35 -13.29 9.47 -56.59 -0.54 -13.83 16 14 C 0.08 3.30 5.48 71.98 0.39 3.69 16 15 C -0.09 -3.99 5.53 30.59 0.17 -3.82 16 16 C 0.03 1.44 4.97 29.85 0.15 1.58 16 17 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 20 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 21 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 26 H 0.12 1.07 7.90 -2.91 -0.02 1.05 16 27 H 0.10 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.09 1.11 7.38 -2.39 -0.02 1.09 16 29 H 0.09 1.17 7.66 -2.39 -0.02 1.15 16 30 H 0.16 1.39 6.30 -2.91 -0.02 1.37 16 31 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.15 3.03 7.61 -2.91 -0.02 3.00 16 34 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 40 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -76.87 349.81 7.08 -69.78 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.02 Total: 7.24 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.45 Total: -19.94 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.28 Total: -57.85 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.70 Total: -45.92 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.87 7.08 -69.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914627075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.530 kcal (2) G-P(sol) polarization free energy of solvation -76.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds