Wall clock time and date at job start Tue Mar 31 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 O 1.42899 * 109.47130 * 135.00027 * 3 2 1 5 5 C 1.35694 * 117.00093 * 179.97438 * 4 3 2 6 6 C 1.39021 * 119.90499 * 0.27444 * 5 4 3 7 7 C 1.37679 * 120.09068 * 180.28089 * 6 5 4 8 8 C 1.39794 * 119.90398 * 359.43972 * 7 6 5 9 9 C 1.47473 * 120.08904 * 180.29757 * 8 7 6 10 10 O 1.21498 * 120.00032 * 0.02562 * 9 8 7 11 11 O 1.34752 * 119.99783 * 180.02562 * 9 8 7 12 12 C 1.45204 * 116.99850 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46771 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46889 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47209 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99975 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00360 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99529 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00423 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46928 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46890 * 120.00089 * 19 17 15 22 22 H 1.48494 * 109.47250 * 240.00316 * 19 17 15 23 23 C 1.39784 * 119.81736 * 0.28441 * 8 7 6 24 24 C 1.37681 * 119.90771 * 359.97438 * 23 8 7 25 25 H 1.07997 * 119.99957 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99643 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99957 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46919 * 14.99616 * 3 2 1 29 29 H 1.09000 * 109.46708 * 254.99529 * 3 2 1 30 30 H 1.07998 * 119.95278 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.04953 * 179.72504 * 7 6 5 32 32 H 1.09000 * 109.47171 * 300.00282 * 12 11 9 33 33 H 1.09001 * 109.46834 * 60.00652 * 12 11 9 34 34 H 1.09000 * 109.47020 * 299.99783 * 13 12 11 35 35 H 1.08993 * 109.47547 * 60.00129 * 13 12 11 36 36 H 1.09000 * 109.46726 * 299.99490 * 14 13 12 37 37 H 1.08993 * 109.47306 * 59.99509 * 14 13 12 38 38 H 0.97007 * 119.99569 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.04680 * 180.02562 * 23 8 7 40 40 H 1.08000 * 119.95490 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6519 3.4673 0.3012 7 6 4.4462 4.5854 0.4211 8 6 5.5049 4.5935 1.3340 9 6 6.3543 5.7913 1.4705 10 8 6.1341 6.7730 0.7893 11 8 7.3746 5.7970 2.3506 12 6 8.1683 7.0102 2.4320 13 6 9.2715 6.8288 3.4764 14 6 10.1074 8.1074 3.5626 15 6 11.1944 7.9285 4.5908 16 1 11.2803 6.9962 5.1293 17 6 12.0795 8.9549 4.8442 18 7 11.9746 10.0903 4.1888 19 14 13.4265 8.7334 6.1193 20 1 13.3291 7.3752 6.7114 21 1 14.7528 8.8965 5.4716 22 1 13.2689 9.7523 7.1880 23 6 5.7560 3.4633 2.1172 24 6 4.9601 2.3474 1.9873 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4756 1.4867 -0.9927 30 1 2.8312 3.4616 -0.4009 31 1 4.2489 5.4566 -0.1859 32 1 8.6181 7.2159 1.4607 33 1 7.5284 7.8443 2.7201 34 1 8.8219 6.6229 4.4478 35 1 9.9113 5.9948 3.1881 36 1 10.5570 8.3136 2.5913 37 1 9.4674 8.9411 3.8512 38 1 12.5975 10.8123 4.3668 39 1 6.5727 3.4657 2.8240 40 1 5.1531 1.4739 2.5924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914627462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:57 Heat of formation + Delta-G solvation = -93.579423 kcal Electronic energy + Delta-G solvation = -21050.885315 eV Core-core repulsion = 17603.264262 eV Total energy + Delta-G solvation = -3447.621052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76463 -39.93649 -37.79323 -36.30193 -34.61095 -33.97079 -31.78276 -31.42975 -30.61155 -27.34343 -26.97614 -24.30091 -22.98233 -22.84618 -20.78525 -20.48600 -20.30194 -18.68135 -17.79687 -16.82491 -16.69907 -16.26892 -16.19389 -16.02058 -15.14057 -14.76714 -14.45677 -14.10055 -13.92285 -13.86601 -13.70858 -13.06918 -12.95078 -12.62745 -12.16833 -12.14166 -11.86475 -11.72160 -11.55463 -11.18235 -10.97636 -10.64777 -10.62072 -10.37584 -10.36564 -10.09330 -9.70646 -9.50342 -9.41176 -9.13878 -8.63322 -8.38127 -6.02719 -4.05610 0.57101 1.01981 1.48003 2.55432 2.81442 2.91208 3.30835 3.38257 3.42651 3.56585 4.20278 4.41605 4.41793 4.44224 4.52593 4.68493 4.79485 4.85580 4.96386 5.09564 5.22792 5.29754 5.33386 5.60664 5.64552 5.67662 5.81161 5.88821 5.94289 6.00583 6.04185 6.09719 6.30886 6.52090 6.55954 6.85579 6.91993 7.00000 7.61765 7.72671 7.94963 7.96601 8.37036 9.00912 9.58704 11.08733 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.046204 B = 0.002061 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.862823 B =13584.106226 C =14128.449107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C 0.084 3.916 4 O -0.307 6.307 5 C 0.160 3.840 6 C -0.225 4.225 7 C -0.014 4.014 8 C -0.160 4.160 9 C 0.506 3.494 10 O -0.514 6.514 11 O -0.354 6.354 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.019 4.019 24 C -0.165 4.165 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.150 0.850 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.350 -19.589 -9.195 31.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.009 3.991 4 O -0.220 6.220 5 C 0.114 3.886 6 C -0.243 4.243 7 C -0.032 4.032 8 C -0.162 4.162 9 C 0.351 3.649 10 O -0.404 6.404 11 O -0.271 6.271 12 C -0.004 4.004 13 C -0.146 4.146 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.037 4.037 24 C -0.184 4.184 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.167 0.833 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.292 -19.288 -9.291 30.907 hybrid contribution 0.672 0.317 0.385 0.837 sum -21.620 -18.971 -8.907 30.110 Atomic orbital electron populations 1.23922 0.95413 1.02728 0.98530 1.22659 0.95671 0.97712 1.01565 1.21917 0.87794 0.97144 0.92247 1.86062 1.41923 1.35648 1.58366 1.19327 0.90165 0.85522 0.93571 1.21159 1.04294 0.94055 1.04815 1.21060 0.90724 0.97544 0.93884 1.19143 0.99618 0.93968 1.03444 1.20986 0.79344 0.87108 0.77414 1.90821 1.70120 1.35429 1.44060 1.86536 1.40789 1.43302 1.56439 1.23522 0.92192 0.83126 1.01521 1.21767 0.94509 1.02188 0.96182 1.19062 0.94040 0.90687 0.97632 1.21215 1.13207 0.99989 1.21490 0.92354 1.25035 0.97849 0.95220 0.96401 1.69983 1.37475 1.04265 1.41612 0.86489 0.81715 0.78183 0.81346 1.19675 1.20989 1.20986 1.21387 0.96839 0.90229 0.95294 1.20436 0.96111 1.00451 1.01373 0.88143 0.87312 0.86113 0.91086 0.90624 0.84674 0.84135 0.91443 0.91440 0.92111 0.92103 0.96198 0.96195 0.92969 0.83276 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 14.31 29.01 0.42 -0.27 16 2 C -0.16 -0.83 9.89 -36.03 -0.36 -1.19 16 3 C 0.08 0.50 5.15 36.01 0.19 0.69 16 4 O -0.31 -2.71 10.11 -18.79 -0.19 -2.90 16 5 C 0.16 1.53 6.70 -39.00 -0.26 1.27 16 6 C -0.22 -2.02 9.01 -39.50 -0.36 -2.38 16 7 C -0.01 -0.15 9.59 -39.20 -0.38 -0.53 16 8 C -0.16 -2.07 5.87 -104.98 -0.62 -2.69 16 9 C 0.51 8.24 7.89 34.49 0.27 8.51 16 10 O -0.51 -9.59 16.13 -19.26 -0.31 -9.90 16 11 O -0.35 -6.06 9.46 -40.63 -0.38 -6.45 16 12 C 0.07 1.30 5.48 37.16 0.20 1.51 16 13 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 C -0.02 -0.21 9.61 -39.21 -0.38 -0.59 16 24 C -0.17 -1.60 9.97 -39.50 -0.39 -2.00 16 25 H 0.10 0.33 7.90 -52.49 -0.41 -0.08 16 26 H 0.11 0.32 8.06 -52.49 -0.42 -0.11 16 27 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.07 0.36 7.36 -51.93 -0.38 -0.03 16 29 H 0.08 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.14 0.85 6.28 -52.49 -0.33 0.53 16 31 H 0.14 1.48 7.64 -52.49 -0.40 1.08 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.15 1.53 7.60 -52.48 -0.40 1.13 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -32.42 351.88 -7.90 -40.32 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -5.67 Total: -3.65 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.36 Total: -13.16 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.89 Total: -19.25 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.42 -7.90 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914627462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.264 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds