Wall clock time and date at job start Tue Mar 31 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 O 1.42899 * 109.47130 * 135.00027 * 3 2 1 5 5 C 1.35694 * 117.00093 * 179.97438 * 4 3 2 6 6 C 1.39021 * 119.90499 * 0.27444 * 5 4 3 7 7 C 1.37679 * 120.09068 * 180.28089 * 6 5 4 8 8 C 1.39794 * 119.90398 * 359.43972 * 7 6 5 9 9 C 1.47473 * 120.08904 * 180.29757 * 8 7 6 10 10 O 1.21498 * 120.00032 * 0.02562 * 9 8 7 11 11 O 1.34752 * 119.99783 * 180.02562 * 9 8 7 12 12 C 1.45204 * 116.99850 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46771 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.46889 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47209 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99975 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00360 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99529 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00423 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46928 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46890 * 120.00089 * 19 17 15 22 22 H 1.48494 * 109.47250 * 240.00316 * 19 17 15 23 23 C 1.39784 * 119.81736 * 0.28441 * 8 7 6 24 24 C 1.37681 * 119.90771 * 359.97438 * 23 8 7 25 25 H 1.07997 * 119.99957 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99643 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99957 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46919 * 14.99616 * 3 2 1 29 29 H 1.09000 * 109.46708 * 254.99529 * 3 2 1 30 30 H 1.07998 * 119.95278 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.04953 * 179.72504 * 7 6 5 32 32 H 1.09000 * 109.47171 * 300.00282 * 12 11 9 33 33 H 1.09001 * 109.46834 * 60.00652 * 12 11 9 34 34 H 1.09000 * 109.47020 * 299.99783 * 13 12 11 35 35 H 1.08993 * 109.47547 * 60.00129 * 13 12 11 36 36 H 1.09000 * 109.46726 * 299.99490 * 14 13 12 37 37 H 1.08993 * 109.47306 * 59.99509 * 14 13 12 38 38 H 0.97007 * 119.99569 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.04680 * 180.02562 * 23 8 7 40 40 H 1.08000 * 119.95490 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6519 3.4673 0.3012 7 6 4.4462 4.5854 0.4211 8 6 5.5049 4.5935 1.3340 9 6 6.3543 5.7913 1.4705 10 8 6.1341 6.7730 0.7893 11 8 7.3746 5.7970 2.3506 12 6 8.1683 7.0102 2.4320 13 6 9.2715 6.8288 3.4764 14 6 10.1074 8.1074 3.5626 15 6 11.1944 7.9285 4.5908 16 1 11.2803 6.9962 5.1293 17 6 12.0795 8.9549 4.8442 18 7 11.9746 10.0903 4.1888 19 14 13.4265 8.7334 6.1193 20 1 13.3291 7.3752 6.7114 21 1 14.7528 8.8965 5.4716 22 1 13.2689 9.7523 7.1880 23 6 5.7560 3.4633 2.1172 24 6 4.9601 2.3474 1.9873 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4756 1.4867 -0.9927 30 1 2.8312 3.4616 -0.4009 31 1 4.2489 5.4566 -0.1859 32 1 8.6181 7.2159 1.4607 33 1 7.5284 7.8443 2.7201 34 1 8.8219 6.6229 4.4478 35 1 9.9113 5.9948 3.1881 36 1 10.5570 8.3136 2.5913 37 1 9.4674 8.9411 3.8512 38 1 12.5975 10.8123 4.3668 39 1 6.5727 3.4657 2.8240 40 1 5.1531 1.4739 2.5924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914627462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:57 Heat of formation + Delta-G solvation = -110.461550 kcal Electronic energy + Delta-G solvation = -21051.617379 eV Core-core repulsion = 17603.264262 eV Total energy + Delta-G solvation = -3448.353116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73901 -40.96895 -38.63339 -37.67593 -35.93271 -35.02117 -33.70455 -32.23528 -31.54177 -28.98528 -27.71403 -25.73623 -24.35329 -23.70939 -22.17095 -21.86823 -20.88250 -19.38817 -18.94098 -18.57623 -17.75098 -17.66277 -17.25443 -16.83797 -16.48045 -15.85825 -15.67738 -15.42937 -15.02707 -14.59960 -14.39390 -14.26309 -13.96011 -13.87512 -13.67137 -13.53410 -13.39357 -12.85094 -12.50549 -12.39709 -12.25842 -12.17525 -12.08540 -11.84723 -11.80559 -11.44851 -11.41754 -11.21714 -10.57594 -10.44748 -10.18679 -9.42907 -8.21500 -6.32971 -0.35602 0.24872 1.11848 1.41943 1.42232 1.44196 1.55355 1.61258 2.25994 2.41885 2.67444 3.12500 3.58210 3.63968 3.76753 3.93426 4.00150 4.05997 4.07933 4.09143 4.26281 4.33711 4.40517 4.50268 4.56021 4.78924 4.80094 4.91540 4.96594 5.06172 5.07868 5.13281 5.26959 5.40120 5.50130 5.51149 5.63021 5.64112 5.69119 5.80530 6.19407 6.25883 6.65022 6.83160 7.36589 8.90902 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.046204 B = 0.002061 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.862823 B =13584.106226 C =14128.449107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.177 4.177 3 C 0.075 3.925 4 O -0.315 6.315 5 C 0.166 3.834 6 C -0.216 4.216 7 C -0.017 4.017 8 C -0.186 4.186 9 C 0.505 3.495 10 O -0.546 6.546 11 O -0.352 6.352 12 C 0.078 3.922 13 C -0.093 4.093 14 C 0.024 3.976 15 C -0.543 4.543 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.019 4.019 24 C -0.167 4.167 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.141 0.859 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.153 0.847 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.443 -21.787 -8.826 33.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.195 4.195 3 C 0.001 3.999 4 O -0.228 6.228 5 C 0.119 3.881 6 C -0.235 4.235 7 C -0.035 4.035 8 C -0.187 4.187 9 C 0.353 3.647 10 O -0.438 6.438 11 O -0.268 6.268 12 C 0.005 3.995 13 C -0.131 4.131 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.037 4.037 24 C -0.185 4.185 25 H 0.128 0.872 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.182 0.818 31 H 0.159 0.841 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.171 0.829 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.405 -21.517 -8.925 33.022 hybrid contribution 0.845 0.891 0.200 1.245 sum -22.560 -20.626 -8.725 31.788 Atomic orbital electron populations 1.24136 0.95110 1.03753 0.96633 1.22683 0.96120 0.97419 1.03315 1.22189 0.87371 0.98071 0.92225 1.86070 1.42385 1.35227 1.59097 1.19469 0.89856 0.85803 0.92939 1.21394 1.04357 0.92911 1.04803 1.21152 0.90485 0.98371 0.93480 1.19081 1.00516 0.93289 1.05822 1.21634 0.78839 0.87884 0.76342 1.90798 1.70892 1.36858 1.45261 1.86517 1.41180 1.42043 1.57073 1.23166 0.91927 0.83839 1.00567 1.21458 0.94600 0.99693 0.97302 1.18951 0.94012 0.92392 0.95928 1.21659 1.13933 1.00423 1.22029 0.91590 1.26018 1.00522 0.94785 0.98627 1.70116 1.38693 1.05235 1.43313 0.85324 0.78200 0.78683 0.78383 1.18348 1.20417 1.20412 1.21425 0.97209 0.90034 0.95021 1.20626 0.95848 1.00483 1.01574 0.87249 0.86218 0.86298 0.89835 0.89460 0.81775 0.84119 0.91907 0.91899 0.91328 0.91323 0.98461 0.98452 0.92712 0.82916 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 14.31 67.77 0.97 0.06 16 2 C -0.18 -1.49 9.89 25.64 0.25 -1.24 16 3 C 0.08 0.70 5.15 71.24 0.37 1.07 16 4 O -0.31 -4.79 10.11 -90.13 -0.91 -5.70 16 5 C 0.17 2.79 6.70 22.64 0.15 2.94 16 6 C -0.22 -3.40 9.01 22.33 0.20 -3.19 16 7 C -0.02 -0.35 9.59 22.51 0.22 -0.13 16 8 C -0.19 -4.72 5.87 -20.09 -0.12 -4.84 16 9 C 0.51 16.67 7.89 70.26 0.55 17.23 16 10 O -0.55 -20.88 16.13 19.84 0.32 -20.56 16 11 O -0.35 -12.11 9.46 -56.62 -0.54 -12.65 16 12 C 0.08 3.02 5.48 71.98 0.39 3.41 16 13 C -0.09 -3.91 5.53 30.60 0.17 -3.74 16 14 C 0.02 1.30 4.97 29.85 0.15 1.45 16 15 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 17 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 18 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 19 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 C -0.02 -0.39 9.61 22.51 0.22 -0.18 16 24 C -0.17 -2.93 9.97 22.32 0.22 -2.70 16 25 H 0.11 0.42 7.90 -2.91 -0.02 0.40 16 26 H 0.12 0.41 8.06 -2.91 -0.02 0.38 16 27 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 28 H 0.08 0.57 7.36 -2.39 -0.02 0.56 16 29 H 0.09 0.61 7.66 -2.39 -0.02 0.59 16 30 H 0.16 1.54 6.28 -2.91 -0.02 1.52 16 31 H 0.14 2.90 7.64 -2.91 -0.02 2.87 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.75 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 39 H 0.15 3.01 7.60 -2.91 -0.02 2.98 16 40 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.91 351.88 6.64 -63.27 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.02 Total: 6.41 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.44 Total: -20.19 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.28 Total: -56.85 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.13 Total: -38.91 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.91 6.64 -63.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914627462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.196 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds