Wall clock time and date at job start Tue Mar 31 2020 06:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48499 * 109.46945 * 240.00058 * 3 2 1 5 5 H 1.48506 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47666 * 119.99175 * 3 2 1 7 7 C 1.37875 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47354 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00109 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99919 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99868 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00072 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47289 * 179.97438 * 15 14 12 17 17 C 1.37972 * 119.87929 * 259.72606 * 16 15 14 18 18 C 1.38242 * 120.34901 * 179.81928 * 17 16 15 19 19 C 1.38385 * 119.76724 * 0.39403 * 18 17 16 20 20 C 1.37699 * 119.97882 * 359.68557 * 19 18 17 21 21 C 1.38918 * 120.78818 * 0.30025 * 20 19 18 22 22 O 1.36129 * 111.23385 * 179.29170 * 21 20 19 23 23 C 1.43772 * 109.25982 * 18.86322 * 22 21 20 24 24 C 1.51643 * 132.17907 * 180.54895 * 20 19 18 25 25 H 0.97000 * 119.99960 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46988 * 60.00185 * 9 7 2 27 27 H 1.08995 * 109.47392 * 299.99853 * 9 7 2 28 28 H 1.09003 * 109.46554 * 60.00370 * 10 9 7 29 29 H 1.08995 * 109.47120 * 300.00471 * 10 9 7 30 30 H 0.97006 * 119.99928 * 359.97438 * 11 10 9 31 31 H 0.97001 * 120.00676 * 359.97438 * 14 12 11 32 32 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 33 33 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 34 34 H 1.08004 * 119.82236 * 0.07535 * 17 16 15 35 35 H 1.07999 * 120.11040 * 180.12559 * 18 17 16 36 36 H 1.08002 * 120.01003 * 179.70184 * 19 18 17 37 37 H 1.09004 * 110.74301 * 90.65418 * 23 22 21 38 38 H 1.09002 * 110.74782 * 213.80978 * 23 22 21 39 39 H 1.08998 * 110.94025 * 46.11767 * 24 20 19 40 40 H 1.09007 * 110.96937 * 282.44300 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.4024 -6.0980 0.0017 14 7 1.5126 -7.2652 -0.0008 15 6 2.2451 -8.5340 -0.0009 16 6 1.2658 -9.6794 -0.0015 17 6 0.9809 -10.3408 1.1753 18 6 0.0813 -11.3904 1.1865 19 6 -0.5299 -11.7841 0.0090 20 6 -0.2458 -11.1264 -1.1669 21 6 0.6561 -10.0701 -1.1909 22 8 0.8018 -9.5747 -2.4504 23 6 -0.3169 -9.9863 -3.2543 24 6 -0.7505 -11.3118 -2.5848 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 0.5426 -4.9308 0.0000 31 1 0.5426 -7.2652 -0.0015 32 1 2.8725 -8.5912 -0.8904 33 1 2.8712 -8.5922 0.8896 34 1 1.4602 -10.0342 2.0933 35 1 -0.1404 -11.9042 2.1103 36 1 -1.2297 -12.6067 0.0124 37 1 -1.1186 -9.2492 -3.2066 38 1 -0.0097 -10.1541 -4.2865 39 1 -1.8350 -11.4200 -2.6013 40 1 -0.2685 -12.1651 -3.0620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921909297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:10 Heat of formation + Delta-G solvation = -46.153077 kcal Electronic energy + Delta-G solvation = -21931.931999 eV Core-core repulsion = 18518.660258 eV Total energy + Delta-G solvation = -3413.271741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45475 -39.43831 -37.86678 -35.29836 -34.47098 -32.91969 -32.58882 -30.77758 -29.62925 -29.27627 -26.18960 -24.37919 -23.61884 -22.38583 -21.25623 -20.89111 -20.44982 -18.07542 -17.65775 -16.90215 -16.45070 -16.31911 -15.95841 -15.48354 -15.14861 -14.49085 -14.25954 -14.03155 -13.69519 -13.63700 -13.41270 -13.29101 -13.09293 -12.73555 -12.44401 -12.23399 -12.06081 -11.83105 -11.22888 -11.14572 -11.05831 -10.97701 -10.61265 -10.25371 -9.91351 -9.53068 -9.26280 -9.09583 -8.90977 -8.44060 -8.42066 -8.15877 -6.05343 -4.07774 0.88663 1.02082 2.94923 3.10353 3.34379 3.37677 3.41275 3.53189 3.70300 4.04377 4.19553 4.42145 4.43928 4.62608 4.66797 4.82050 4.88550 5.02750 5.07658 5.14093 5.31651 5.32715 5.35890 5.48931 5.61760 5.83975 5.99968 6.08696 6.20034 6.30466 6.37051 6.46769 6.68172 6.84310 6.86945 7.09042 7.33721 7.62501 7.68861 7.94260 8.31177 8.52892 8.97392 9.09656 9.56664 11.06382 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.002629 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.444759 B =10647.994530 C =10991.459558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.599 6.599 14 N -0.747 5.747 15 C 0.188 3.812 16 C -0.124 4.124 17 C -0.065 4.065 18 C -0.151 4.151 19 C -0.065 4.065 20 C -0.181 4.181 21 C 0.126 3.874 22 O -0.296 6.296 23 C 0.050 3.950 24 C -0.109 4.109 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.392 0.608 31 H 0.393 0.607 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 -26.960 -2.034 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.393 5.393 12 C 0.399 3.601 13 O -0.478 6.478 14 N -0.404 5.404 15 C 0.064 3.936 16 C -0.125 4.125 17 C -0.084 4.084 18 C -0.169 4.169 19 C -0.083 4.083 20 C -0.182 4.182 21 C 0.080 3.920 22 O -0.209 6.209 23 C -0.025 4.025 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.226 0.774 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.169 -26.649 -2.153 27.059 hybrid contribution -0.752 0.750 -0.087 1.065 sum -4.920 -25.899 -2.240 26.458 Atomic orbital electron populations 1.69947 1.06092 1.26913 1.50490 1.24992 0.94890 0.99378 0.95046 0.86569 0.79506 0.82648 0.78789 1.20112 1.21286 1.20103 1.21031 0.93256 0.90399 1.51228 0.92258 1.19318 0.94262 0.91079 0.97763 1.21575 0.95613 0.80437 1.00608 1.45516 1.09785 1.05296 1.78657 1.16042 0.85611 0.80423 0.77994 1.90881 1.11767 1.86669 1.58505 1.45130 1.09332 1.04262 1.81643 1.19811 0.91755 0.79139 1.02915 1.19200 1.02806 1.00371 0.90128 1.20907 0.96346 0.94505 0.96629 1.21037 0.98857 0.98929 0.98098 1.20338 0.98598 0.98568 0.90793 1.20791 1.02803 0.98823 0.95802 1.19424 0.94963 0.92016 0.85574 1.86918 1.43432 1.72480 1.18109 1.23874 0.88087 0.94917 0.95653 1.21793 1.02538 0.98785 0.91524 0.92843 0.96013 0.95994 0.92815 0.92832 0.77473 0.77389 0.90885 0.90898 0.84732 0.85230 0.85777 0.90275 0.87483 0.89031 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.15 5.61 -4.04 -0.02 3.13 16 11 N -0.74 -13.90 5.56 -65.23 -0.36 -14.26 16 12 C 0.70 13.17 8.57 -86.92 -0.74 12.43 16 13 O -0.60 -13.65 16.34 5.29 0.09 -13.56 16 14 N -0.75 -10.75 5.55 -66.41 -0.37 -11.12 16 15 C 0.19 2.46 5.77 -5.19 -0.03 2.43 16 16 C -0.12 -1.35 5.27 -104.34 -0.55 -1.90 16 17 C -0.07 -0.58 9.63 -39.68 -0.38 -0.96 16 18 C -0.15 -1.15 10.07 -39.53 -0.40 -1.55 16 19 C -0.06 -0.50 10.03 -39.72 -0.40 -0.90 16 20 C -0.18 -1.62 6.27 -104.10 -0.65 -2.28 16 21 C 0.13 1.40 6.76 -38.96 -0.26 1.13 16 22 O -0.30 -3.45 11.05 -20.15 -0.22 -3.68 16 23 C 0.05 0.37 8.01 38.05 0.30 0.68 16 24 C -0.11 -0.71 7.12 -26.52 -0.19 -0.89 16 25 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.39 6.40 8.49 -40.82 -0.35 6.05 16 31 H 0.39 4.80 8.48 -40.82 -0.35 4.45 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 34 H 0.13 1.00 8.02 -52.48 -0.42 0.58 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 343.82 15.07 5.18 5.18 Total: -1.00 -34.39 343.82 -9.57 -43.96 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.72 Total: 4.56 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.88 Total: -1.97 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.00 Total: -51.16 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.14 Total: -17.24 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.39 -9.57 -43.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921909297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.197 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds