Wall clock time and date at job start Tue Mar 31 2020 06:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48499 * 109.46945 * 240.00058 * 3 2 1 5 5 H 1.48506 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47666 * 119.99175 * 3 2 1 7 7 C 1.37875 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47354 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00109 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99919 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99868 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00072 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47289 * 179.97438 * 15 14 12 17 17 C 1.37972 * 119.87929 * 259.72606 * 16 15 14 18 18 C 1.38242 * 120.34901 * 179.81928 * 17 16 15 19 19 C 1.38385 * 119.76724 * 0.39403 * 18 17 16 20 20 C 1.37699 * 119.97882 * 359.68557 * 19 18 17 21 21 C 1.38918 * 120.78818 * 0.30025 * 20 19 18 22 22 O 1.36129 * 111.23385 * 179.29170 * 21 20 19 23 23 C 1.43772 * 109.25982 * 18.86322 * 22 21 20 24 24 C 1.51643 * 132.17907 * 180.54895 * 20 19 18 25 25 H 0.97000 * 119.99960 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46988 * 60.00185 * 9 7 2 27 27 H 1.08995 * 109.47392 * 299.99853 * 9 7 2 28 28 H 1.09003 * 109.46554 * 60.00370 * 10 9 7 29 29 H 1.08995 * 109.47120 * 300.00471 * 10 9 7 30 30 H 0.97006 * 119.99928 * 359.97438 * 11 10 9 31 31 H 0.97001 * 120.00676 * 359.97438 * 14 12 11 32 32 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 33 33 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 34 34 H 1.08004 * 119.82236 * 0.07535 * 17 16 15 35 35 H 1.07999 * 120.11040 * 180.12559 * 18 17 16 36 36 H 1.08002 * 120.01003 * 179.70184 * 19 18 17 37 37 H 1.09004 * 110.74301 * 90.65418 * 23 22 21 38 38 H 1.09002 * 110.74782 * 213.80978 * 23 22 21 39 39 H 1.08998 * 110.94025 * 46.11767 * 24 20 19 40 40 H 1.09007 * 110.96937 * 282.44300 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.4024 -6.0980 0.0017 14 7 1.5126 -7.2652 -0.0008 15 6 2.2451 -8.5340 -0.0009 16 6 1.2658 -9.6794 -0.0015 17 6 0.9809 -10.3408 1.1753 18 6 0.0813 -11.3904 1.1865 19 6 -0.5299 -11.7841 0.0090 20 6 -0.2458 -11.1264 -1.1669 21 6 0.6561 -10.0701 -1.1909 22 8 0.8018 -9.5747 -2.4504 23 6 -0.3169 -9.9863 -3.2543 24 6 -0.7505 -11.3118 -2.5848 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 0.5426 -4.9308 0.0000 31 1 0.5426 -7.2652 -0.0015 32 1 2.8725 -8.5912 -0.8904 33 1 2.8712 -8.5922 0.8896 34 1 1.4602 -10.0342 2.0933 35 1 -0.1404 -11.9042 2.1103 36 1 -1.2297 -12.6067 0.0124 37 1 -1.1186 -9.2492 -3.2066 38 1 -0.0097 -10.1541 -4.2865 39 1 -1.8350 -11.4200 -2.6013 40 1 -0.2685 -12.1651 -3.0620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921909297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:10 Heat of formation + Delta-G solvation = -69.914807 kcal Electronic energy + Delta-G solvation = -21932.962385 eV Core-core repulsion = 18518.660258 eV Total energy + Delta-G solvation = -3414.302127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14236 -40.94074 -38.60620 -36.79376 -35.95229 -34.82226 -33.56149 -31.87367 -30.94980 -30.18587 -27.45615 -26.14528 -24.23870 -23.11843 -22.89922 -22.00729 -21.85654 -19.52543 -18.42804 -18.33910 -17.68597 -17.21227 -17.09090 -16.70673 -16.49407 -16.24981 -15.42392 -15.30267 -15.22341 -14.67546 -14.40781 -14.26838 -14.07245 -13.87587 -13.60626 -13.37472 -13.21649 -12.91438 -12.64591 -12.53142 -12.47858 -12.22024 -11.85723 -11.72456 -11.69451 -11.52051 -11.25799 -10.60008 -10.37606 -9.82922 -9.72888 -9.11091 -8.23451 -6.33961 0.19096 0.35324 1.42167 1.45031 1.52768 1.81464 2.15190 2.33353 2.41998 2.73218 3.11190 3.43351 3.48976 3.54128 3.76071 3.98622 4.14552 4.28172 4.32755 4.44742 4.47220 4.52117 4.58494 4.65322 4.70114 4.86323 4.87061 4.89264 5.07790 5.30393 5.37395 5.40517 5.44246 5.51542 5.52632 5.59398 5.69339 5.78837 6.01490 6.17471 6.19947 6.78840 7.09721 7.35220 7.57386 8.88436 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.002629 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.444759 B =10647.994530 C =10991.459558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.699 3.301 13 O -0.640 6.640 14 N -0.727 5.727 15 C 0.191 3.809 16 C -0.141 4.141 17 C -0.071 4.071 18 C -0.147 4.147 19 C -0.063 4.063 20 C -0.188 4.188 21 C 0.101 3.899 22 O -0.329 6.329 23 C 0.040 3.960 24 C -0.102 4.102 25 H 0.266 0.734 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.406 0.594 31 H 0.406 0.594 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 -28.316 -1.703 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.399 3.601 13 O -0.522 6.522 14 N -0.383 5.383 15 C 0.068 3.932 16 C -0.142 4.142 17 C -0.089 4.089 18 C -0.165 4.165 19 C -0.081 4.081 20 C -0.188 4.188 21 C 0.056 3.944 22 O -0.243 6.243 23 C -0.034 4.034 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.241 0.759 31 H 0.241 0.759 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.224 -28.053 -1.824 28.594 hybrid contribution -0.497 1.064 -0.197 1.191 sum -5.722 -26.990 -2.021 27.664 Atomic orbital electron populations 1.70052 1.07556 1.28083 1.50954 1.25877 0.95815 1.03109 0.94356 0.85486 0.78300 0.78034 0.79153 1.19369 1.20493 1.19278 1.21443 0.93632 0.91897 1.51677 0.92264 1.19117 0.94193 0.91620 0.96313 1.21087 0.94654 0.81038 0.99599 1.45217 1.10314 1.04406 1.78819 1.16146 0.85128 0.81170 0.77697 1.90850 1.13678 1.87327 1.60357 1.45010 1.09956 1.03449 1.79854 1.19800 0.92310 0.79281 1.01826 1.19102 1.03416 1.00342 0.91324 1.21103 0.96732 0.94805 0.96255 1.21397 0.97659 0.98081 0.99326 1.20743 0.98422 0.98742 0.90177 1.21159 1.02144 0.98131 0.97415 1.19678 0.96099 0.93275 0.85398 1.86871 1.45259 1.73306 1.18873 1.24145 0.87381 0.95764 0.96152 1.21840 1.03857 0.98335 0.89862 0.92511 0.97417 0.97246 0.93694 0.93977 0.75896 0.75873 0.93101 0.90801 0.83623 0.82497 0.82917 0.89966 0.85917 0.86873 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.36 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.31 5.09 29.85 0.15 1.46 16 10 C 0.16 7.34 5.61 86.38 0.48 7.83 16 11 N -0.73 -27.88 5.56 -478.55 -2.66 -30.54 16 12 C 0.70 26.72 8.57 179.06 1.53 28.26 16 13 O -0.64 -29.87 16.34 -3.98 -0.07 -29.94 16 14 N -0.73 -21.10 5.55 -482.28 -2.68 -23.78 16 15 C 0.19 5.15 5.77 85.63 0.49 5.64 16 16 C -0.14 -3.03 5.27 -19.68 -0.10 -3.14 16 17 C -0.07 -1.15 9.63 22.21 0.21 -0.94 16 18 C -0.15 -1.82 10.07 22.31 0.22 -1.60 16 19 C -0.06 -0.78 10.03 22.18 0.22 -0.55 16 20 C -0.19 -3.01 6.27 -19.53 -0.12 -3.13 16 21 C 0.10 2.20 6.76 22.68 0.15 2.35 16 22 O -0.33 -7.75 11.05 -95.01 -1.05 -8.80 16 23 C 0.04 0.56 8.01 72.56 0.58 1.14 16 24 C -0.10 -1.10 7.12 30.73 0.22 -0.88 16 25 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.41 13.23 8.49 -92.70 -0.79 12.45 16 31 H 0.41 9.79 8.48 -92.71 -0.79 9.00 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.95 7.99 -2.38 -0.02 1.93 16 34 H 0.15 1.95 8.02 -2.91 -0.02 1.93 16 35 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 38 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 0.86 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -74.54 343.82 0.10 -74.45 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.51 Total: 20.93 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.75 Total: 6.19 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -5.05 Total: -109.12 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.11 Total: -38.74 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -74.54 0.10 -74.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921909297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.531 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds