Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46947 * 2 1 4 4 H 1.08993 * 115.55356 * 29.41714 * 3 2 1 5 5 C 1.53002 * 117.51528 * 243.71564 * 3 2 1 6 6 C 1.52997 * 117.49610 * 175.08894 * 3 2 1 7 7 H 1.09004 * 117.50305 * 359.97438 * 6 3 2 8 8 C 1.53003 * 117.49832 * 215.00184 * 6 3 2 9 9 O 1.45201 * 109.47319 * 175.00119 * 8 6 3 10 10 C 1.34753 * 117.00023 * 179.97438 * 9 8 6 11 11 O 1.21511 * 120.00376 * 359.97438 * 10 9 8 12 12 C 1.47402 * 119.99719 * 179.97438 * 10 9 8 13 13 C 1.39723 * 120.20589 * 359.72631 * 12 10 9 14 14 C 1.37803 * 119.91636 * 179.69526 * 13 12 10 15 15 C 1.38596 * 120.33021 * 0.60502 * 14 13 12 16 16 C 1.38031 * 120.41054 * 359.66955 * 15 14 13 17 17 C 1.38828 * 120.07862 * 0.02908 * 16 15 14 18 18 O 1.35503 * 120.16586 * 179.97438 * 17 16 15 19 19 C 1.34813 * 116.99806 * 354.39729 * 18 17 16 20 20 H 1.07993 * 120.00141 * 5.06225 * 19 18 17 21 21 C 1.38703 * 119.99653 * 185.06056 * 19 18 17 22 22 N 1.31516 * 120.00345 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47149 * 59.99703 * 23 21 19 25 25 H 1.48498 * 109.47450 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47016 * 300.00440 * 23 21 19 27 27 H 1.09000 * 109.47363 * 59.99817 * 1 2 3 28 28 H 1.09004 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47602 * 300.00055 * 1 2 3 30 30 H 1.08997 * 109.46937 * 239.99986 * 2 1 3 31 31 H 1.09000 * 109.47363 * 120.00183 * 2 1 3 32 32 H 1.09002 * 117.50594 * 0.02562 * 5 3 2 33 33 H 1.09001 * 117.49811 * 145.03436 * 5 3 2 34 34 H 1.09004 * 109.46965 * 294.99630 * 8 6 3 35 35 H 1.08994 * 109.46849 * 55.00022 * 8 6 3 36 36 H 1.07999 * 120.04170 * 359.97438 * 13 12 10 37 37 H 1.08001 * 119.84128 * 180.30266 * 14 13 12 38 38 H 1.07992 * 119.79582 * 179.70005 * 15 14 13 39 39 H 1.07997 * 119.95878 * 180.02562 * 16 15 14 40 40 H 0.97000 * 120.00118 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3891 2.1712 0.4830 5 6 2.8421 1.9086 -1.2167 6 6 3.5502 1.6578 0.1162 7 1 4.1805 0.7718 0.1931 8 6 4.0313 2.8796 0.9015 9 8 5.4795 2.8507 1.0024 10 6 6.0667 3.8642 1.6686 11 8 5.3872 4.7482 2.1516 12 6 7.5333 3.9004 1.8114 13 6 8.3184 2.8832 1.2627 14 6 9.6894 2.9263 1.3943 15 6 10.2943 3.9680 2.0797 16 6 9.5315 4.9771 2.6322 17 6 8.1493 4.9539 2.5044 18 8 7.3987 5.9433 3.0465 19 6 8.0433 6.8596 3.7963 20 1 9.1200 6.8321 3.8752 21 6 7.3235 7.8377 4.4664 22 7 6.0123 7.8716 4.3699 23 14 8.2165 9.1071 5.5061 24 1 9.1557 9.8757 4.6503 25 1 7.2278 10.0339 6.1133 26 1 8.9761 8.4203 6.5816 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.0063 1.1878 -2.0176 33 1 2.7189 2.9441 -1.5340 34 1 3.7211 3.7883 0.3855 35 1 3.5970 2.8630 1.9011 36 1 7.8516 2.0665 0.7321 37 1 10.2954 2.1419 0.9654 38 1 11.3692 3.9906 2.1819 39 1 10.0105 5.7855 3.1644 40 1 5.5090 8.5554 4.8389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922377599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = -72.227892 kcal Electronic energy + Delta-G solvation = -22223.189098 eV Core-core repulsion = 18776.493918 eV Total energy + Delta-G solvation = -3446.695181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.84535 -38.81979 -37.97258 -36.41517 -35.38241 -32.42998 -32.40873 -30.70395 -28.98020 -27.42272 -25.45575 -23.98779 -23.33328 -21.63346 -20.91265 -20.53199 -20.05869 -18.07354 -17.46150 -16.61551 -16.02011 -15.69486 -14.98639 -14.76782 -14.65684 -14.35163 -14.24286 -13.82999 -13.75427 -13.47089 -13.05898 -12.68035 -12.38317 -12.31186 -12.16528 -11.76106 -11.55336 -11.37025 -11.30074 -11.14872 -11.07714 -10.92029 -10.79146 -10.51051 -10.43601 -10.10656 -9.73992 -9.66560 -9.22592 -8.93184 -8.32646 -7.38365 -6.51256 -4.11301 1.60691 2.30578 3.08446 3.10830 3.13167 3.15918 3.47155 3.71207 3.88598 4.50798 4.55253 4.70841 4.78869 4.98789 5.01093 5.13372 5.15096 5.22773 5.33135 5.51436 5.55192 5.59484 5.64188 5.72183 5.73276 5.78386 5.80538 5.89806 5.94182 6.01474 6.12590 6.16180 6.26151 6.57389 6.65131 6.89207 7.01253 7.11649 7.22698 7.30878 7.65503 7.87021 8.74380 8.88733 9.57961 10.62394 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003662 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.765137 B = 7643.541627 C = 9102.671861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.143 4.143 4 H 0.107 0.893 5 C -0.172 4.172 6 C -0.148 4.148 7 H 0.115 0.885 8 C 0.100 3.900 9 O -0.365 6.365 10 C 0.497 3.503 11 O -0.478 6.478 12 C -0.216 4.216 13 C -0.015 4.015 14 C -0.235 4.235 15 C -0.044 4.044 16 C -0.239 4.239 17 C 0.191 3.809 18 O -0.125 6.125 19 C -0.404 4.404 20 H 0.096 0.904 21 C 0.045 3.955 22 N -0.832 5.832 23 Si 0.943 3.057 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.268 1.268 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.096 -12.155 -7.570 14.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.162 4.162 4 H 0.125 0.875 5 C -0.209 4.209 6 C -0.166 4.166 7 H 0.133 0.867 8 C 0.026 3.974 9 O -0.284 6.284 10 C 0.343 3.657 11 O -0.364 6.364 12 C -0.218 4.218 13 C -0.034 4.034 14 C -0.254 4.254 15 C -0.062 4.062 16 C -0.258 4.258 17 C 0.131 3.869 18 O -0.023 6.023 19 C -0.479 4.479 20 H 0.113 0.887 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.840 -11.638 -7.321 14.275 hybrid contribution 0.437 0.739 0.527 1.007 sum -3.403 -10.899 -6.794 13.286 Atomic orbital electron populations 1.21750 0.95453 1.01493 1.02011 1.21122 0.95937 0.93941 1.02102 1.22516 0.92806 0.98379 1.02469 0.87532 1.23267 1.03632 1.02563 0.91458 1.22241 0.94815 0.99821 0.99703 0.86655 1.22336 0.78248 0.96665 1.00146 1.86483 1.22449 1.48654 1.70784 1.21092 0.89202 0.79365 0.76058 1.90998 1.64691 1.36453 1.44292 1.18034 0.88585 1.00083 1.15134 1.20961 0.93402 0.95131 0.93873 1.20542 0.94286 1.01684 1.08886 1.20968 0.98727 0.92830 0.93703 1.21107 0.92959 1.02742 1.09032 1.19238 0.89984 0.87101 0.90550 1.84145 1.34381 1.30005 1.53774 1.21487 0.92556 1.07352 1.26532 0.88688 1.25415 0.95687 0.98023 0.97188 1.70108 1.05500 1.32442 1.38289 0.85763 0.78745 0.79345 0.79484 1.19280 1.20103 1.19277 0.92635 0.92771 0.92576 0.91795 0.91467 0.88583 0.88603 0.91484 0.91173 0.85764 0.86986 0.86961 0.84834 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.87 37.16 0.37 -0.77 16 2 C -0.09 -0.80 6.22 -26.73 -0.17 -0.97 16 3 C -0.14 -1.47 5.45 -90.62 -0.49 -1.97 16 4 H 0.11 1.11 8.07 -51.93 -0.42 0.69 16 5 C -0.17 -1.81 9.82 -26.73 -0.26 -2.07 16 6 C -0.15 -1.82 5.79 -90.62 -0.52 -2.34 16 7 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 8 C 0.10 1.62 5.76 37.16 0.21 1.84 16 9 O -0.36 -6.98 9.47 -40.64 -0.38 -7.36 16 10 C 0.50 11.60 7.89 34.46 0.27 11.87 16 11 O -0.48 -13.15 14.96 -26.59 -0.40 -13.55 16 12 C -0.22 -4.89 5.89 -104.82 -0.62 -5.51 16 13 C -0.02 -0.28 9.61 -39.19 -0.38 -0.66 16 14 C -0.23 -3.96 10.02 -39.61 -0.40 -4.36 16 15 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 16 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 17 C 0.19 4.77 6.66 -38.57 -0.26 4.51 16 18 O -0.12 -3.67 7.84 -21.01 -0.16 -3.84 16 19 C -0.40 -11.31 9.49 30.90 0.29 -11.01 16 20 H 0.10 2.39 5.21 -52.49 -0.27 2.12 16 21 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 22 N -0.83 -24.81 13.67 55.48 0.76 -24.05 16 23 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.87 8.03 -51.93 -0.42 0.46 16 33 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 34 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.12 1.97 7.61 -52.49 -0.40 1.57 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -32.76 345.57 -8.36 -41.12 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.56 Total: 4.18 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.80 Total: -16.93 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.76 Total: -24.05 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.95 Total: -24.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.76 -8.36 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922377599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.103 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds