Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46947 * 2 1 4 4 H 1.08993 * 115.55356 * 29.41714 * 3 2 1 5 5 C 1.53002 * 117.51528 * 243.71564 * 3 2 1 6 6 C 1.52997 * 117.49610 * 175.08894 * 3 2 1 7 7 H 1.09004 * 117.50305 * 359.97438 * 6 3 2 8 8 C 1.53003 * 117.49832 * 215.00184 * 6 3 2 9 9 O 1.45201 * 109.47319 * 175.00119 * 8 6 3 10 10 C 1.34753 * 117.00023 * 179.97438 * 9 8 6 11 11 O 1.21511 * 120.00376 * 359.97438 * 10 9 8 12 12 C 1.47402 * 119.99719 * 179.97438 * 10 9 8 13 13 C 1.39723 * 120.20589 * 359.72631 * 12 10 9 14 14 C 1.37803 * 119.91636 * 179.69526 * 13 12 10 15 15 C 1.38596 * 120.33021 * 0.60502 * 14 13 12 16 16 C 1.38031 * 120.41054 * 359.66955 * 15 14 13 17 17 C 1.38828 * 120.07862 * 0.02908 * 16 15 14 18 18 O 1.35503 * 120.16586 * 179.97438 * 17 16 15 19 19 C 1.34813 * 116.99806 * 354.39729 * 18 17 16 20 20 H 1.07993 * 120.00141 * 5.06225 * 19 18 17 21 21 C 1.38703 * 119.99653 * 185.06056 * 19 18 17 22 22 N 1.31516 * 120.00345 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47149 * 59.99703 * 23 21 19 25 25 H 1.48498 * 109.47450 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47016 * 300.00440 * 23 21 19 27 27 H 1.09000 * 109.47363 * 59.99817 * 1 2 3 28 28 H 1.09004 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47602 * 300.00055 * 1 2 3 30 30 H 1.08997 * 109.46937 * 239.99986 * 2 1 3 31 31 H 1.09000 * 109.47363 * 120.00183 * 2 1 3 32 32 H 1.09002 * 117.50594 * 0.02562 * 5 3 2 33 33 H 1.09001 * 117.49811 * 145.03436 * 5 3 2 34 34 H 1.09004 * 109.46965 * 294.99630 * 8 6 3 35 35 H 1.08994 * 109.46849 * 55.00022 * 8 6 3 36 36 H 1.07999 * 120.04170 * 359.97438 * 13 12 10 37 37 H 1.08001 * 119.84128 * 180.30266 * 14 13 12 38 38 H 1.07992 * 119.79582 * 179.70005 * 15 14 13 39 39 H 1.07997 * 119.95878 * 180.02562 * 16 15 14 40 40 H 0.97000 * 120.00118 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3891 2.1712 0.4830 5 6 2.8421 1.9086 -1.2167 6 6 3.5502 1.6578 0.1162 7 1 4.1805 0.7718 0.1931 8 6 4.0313 2.8796 0.9015 9 8 5.4795 2.8507 1.0024 10 6 6.0667 3.8642 1.6686 11 8 5.3872 4.7482 2.1516 12 6 7.5333 3.9004 1.8114 13 6 8.3184 2.8832 1.2627 14 6 9.6894 2.9263 1.3943 15 6 10.2943 3.9680 2.0797 16 6 9.5315 4.9771 2.6322 17 6 8.1493 4.9539 2.5044 18 8 7.3987 5.9433 3.0465 19 6 8.0433 6.8596 3.7963 20 1 9.1200 6.8321 3.8752 21 6 7.3235 7.8377 4.4664 22 7 6.0123 7.8716 4.3699 23 14 8.2165 9.1071 5.5061 24 1 9.1557 9.8757 4.6503 25 1 7.2278 10.0339 6.1133 26 1 8.9761 8.4203 6.5816 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.0063 1.1878 -2.0176 33 1 2.7189 2.9441 -1.5340 34 1 3.7211 3.7883 0.3855 35 1 3.5970 2.8630 1.9011 36 1 7.8516 2.0665 0.7321 37 1 10.2954 2.1419 0.9654 38 1 11.3692 3.9906 2.1819 39 1 10.0105 5.7855 3.1644 40 1 5.5090 8.5554 4.8389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922377599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = -90.300731 kcal Electronic energy + Delta-G solvation = -22223.972795 eV Core-core repulsion = 18776.493918 eV Total energy + Delta-G solvation = -3447.478878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58540 -40.46063 -39.09891 -38.13296 -37.11032 -34.38321 -33.22480 -32.30231 -30.65193 -28.73406 -27.41410 -25.01906 -24.64671 -23.31643 -22.00083 -21.84355 -21.25033 -19.92093 -19.20518 -18.35298 -17.57509 -17.35772 -16.42379 -16.18292 -16.03571 -15.70107 -15.49107 -15.42214 -15.19255 -14.81426 -14.51424 -14.37509 -13.84134 -13.58022 -13.33788 -13.02061 -12.95501 -12.73517 -12.53839 -12.51830 -12.33237 -12.16423 -12.15031 -11.95003 -11.89077 -11.63406 -11.15452 -10.86985 -10.85481 -10.72330 -9.93433 -9.12940 -8.49228 -6.20740 -0.05861 0.68279 1.32591 1.45593 1.50601 1.64337 1.71892 2.13836 2.73870 2.81320 3.13787 3.35925 3.51260 3.76837 3.84282 4.03109 4.10668 4.12140 4.25204 4.25888 4.31816 4.45727 4.50168 4.51558 4.57294 4.69102 4.81438 4.92042 4.93811 5.03837 5.11034 5.13536 5.16967 5.21184 5.29109 5.40645 5.46649 5.48827 5.59766 5.65606 5.92044 6.11801 6.88963 6.96483 7.70525 8.70804 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003662 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.765137 B = 7643.541627 C = 9102.671861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.133 4.133 4 H 0.100 0.900 5 C -0.162 4.162 6 C -0.160 4.160 7 H 0.126 0.874 8 C 0.096 3.904 9 O -0.350 6.350 10 C 0.497 3.503 11 O -0.533 6.533 12 C -0.238 4.238 13 C -0.012 4.012 14 C -0.203 4.203 15 C -0.026 4.026 16 C -0.256 4.256 17 C 0.156 3.844 18 O -0.188 6.188 19 C -0.429 4.429 20 H 0.112 0.888 21 C -0.021 4.021 22 N -0.904 5.904 23 Si 1.024 2.976 24 H -0.252 1.252 25 H -0.274 1.274 26 H -0.253 1.253 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.132 0.868 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -15.057 -9.124 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.152 4.152 4 H 0.118 0.882 5 C -0.199 4.199 6 C -0.178 4.178 7 H 0.144 0.856 8 C 0.022 3.978 9 O -0.268 6.268 10 C 0.345 3.655 11 O -0.424 6.424 12 C -0.241 4.241 13 C -0.030 4.030 14 C -0.222 4.222 15 C -0.044 4.044 16 C -0.275 4.275 17 C 0.101 3.899 18 O -0.090 6.090 19 C -0.505 4.505 20 H 0.129 0.871 21 C -0.220 4.220 22 N -0.539 5.539 23 Si 0.842 3.158 24 H -0.176 1.176 25 H -0.199 1.199 26 H -0.177 1.177 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.150 0.850 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.078 -14.619 -8.924 17.162 hybrid contribution -0.280 1.248 0.759 1.487 sum -1.358 -13.372 -8.165 15.726 Atomic orbital electron populations 1.21749 0.94725 1.02294 1.01902 1.21149 0.96532 0.92424 1.02761 1.22629 0.91117 0.99641 1.01787 0.88181 1.23372 1.02179 1.03008 0.91347 1.22156 0.96416 0.98154 1.01073 0.85629 1.22584 0.76458 0.98565 1.00205 1.86462 1.24191 1.46706 1.69435 1.21470 0.89836 0.79096 0.75144 1.90982 1.65992 1.38695 1.46698 1.18488 0.88724 1.01092 1.15773 1.21391 0.94268 0.94346 0.92980 1.21231 0.93735 1.01624 1.05576 1.21547 1.00942 0.90895 0.91049 1.21300 0.91705 1.04382 1.10137 1.19992 0.91810 0.87276 0.90819 1.84148 1.36136 1.32155 1.56597 1.22073 0.93527 1.07821 1.27053 0.87051 1.26814 0.96463 1.00321 0.98421 1.70300 1.07856 1.34462 1.41331 0.84592 0.77469 0.76074 0.77659 1.17619 1.19861 1.17687 0.92387 0.91521 0.93118 0.90488 0.91435 0.86309 0.89120 0.92627 0.92516 0.82633 0.81579 0.82067 0.85045 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.87 71.98 0.71 -1.29 16 2 C -0.09 -1.37 6.22 30.59 0.19 -1.18 16 3 C -0.13 -2.60 5.45 -10.79 -0.06 -2.66 16 4 H 0.10 2.09 8.07 -2.39 -0.02 2.07 16 5 C -0.16 -3.15 9.82 30.59 0.30 -2.85 16 6 C -0.16 -3.82 5.79 -10.79 -0.06 -3.88 16 7 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 8 C 0.10 3.24 5.76 71.98 0.41 3.65 16 9 O -0.35 -13.64 9.47 -56.64 -0.54 -14.18 16 10 C 0.50 24.32 7.89 70.24 0.55 24.88 16 11 O -0.53 -31.86 14.96 26.80 0.40 -31.46 16 12 C -0.24 -10.93 5.89 -19.99 -0.12 -11.05 16 13 C -0.01 -0.40 9.61 22.53 0.22 -0.18 16 14 C -0.20 -5.64 10.02 22.25 0.22 -5.42 16 15 C -0.03 -0.81 10.03 22.31 0.22 -0.58 16 16 C -0.26 -10.73 9.16 22.36 0.20 -10.53 16 17 C 0.16 8.08 6.66 22.92 0.15 8.24 16 18 O -0.19 -11.88 7.84 1.04 0.01 -11.88 16 19 C -0.43 -25.53 9.49 67.93 0.64 -24.88 16 20 H 0.11 5.85 5.21 -2.91 -0.02 5.84 16 21 C -0.02 -1.20 5.49 84.85 0.47 -0.73 16 22 N -0.90 -58.33 13.67 21.62 0.30 -58.04 16 23 Si 1.02 43.27 29.55 68.60 2.03 45.29 16 24 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.98 7.88 -2.39 -0.02 0.96 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 1.79 8.03 -2.39 -0.02 1.77 16 33 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 34 H 0.06 1.98 7.87 -2.38 -0.02 1.96 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.16 4.24 7.61 -2.91 -0.02 4.22 16 37 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.13 5.45 5.64 -2.91 -0.02 5.44 16 40 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -81.07 345.57 7.30 -73.78 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 1.04 Total: 24.94 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 4.06 Total: -28.46 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.30 Total: -58.04 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -0.13 Total: -57.51 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -81.07 7.30 -73.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922377599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.525 kcal (2) G-P(sol) polarization free energy of solvation -81.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds