Wall clock time and date at job start Tue Mar 31 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47465 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47473 * 119.99990 * 3 2 1 6 6 H 1.48498 * 109.47243 * 240.00149 * 3 2 1 7 7 C 1.37879 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99993 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47462 * 299.99950 * 9 7 2 11 11 O 1.42894 * 109.47018 * 60.00503 * 9 7 2 12 12 C 1.53008 * 109.46988 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47041 * 181.19127 * 12 9 7 14 14 C 1.47163 * 111.00067 * 306.44734 * 13 12 9 15 15 C 1.52893 * 108.51884 * 307.84202 * 14 13 12 16 16 C 1.50712 * 109.96682 * 309.65106 * 15 14 13 17 17 C 1.38677 * 118.49342 * 196.84871 * 16 15 14 18 18 C 1.38031 * 120.35131 * 180.20196 * 17 16 15 19 19 C 1.38255 * 119.83135 * 0.02562 * 18 17 16 20 20 C 1.38022 * 119.86732 * 359.90829 * 19 18 17 21 21 C 1.37831 * 121.66289 * 16.90364 * 16 15 14 22 22 C 1.46629 * 111.00050 * 183.46705 * 13 12 9 23 23 H 1.08997 * 109.30553 * 191.13012 * 22 13 12 24 24 C 1.50702 * 109.30507 * 310.51543 * 22 13 12 25 25 N 1.34774 * 119.99860 * 235.40193 * 24 22 13 26 26 O 1.21281 * 119.99633 * 55.39655 * 24 22 13 27 27 H 0.96998 * 120.00153 * 0.02562 * 1 2 3 28 28 H 0.96696 * 114.00436 * 55.02246 * 11 9 7 29 29 H 1.09004 * 109.47020 * 301.19598 * 12 9 7 30 30 H 1.08999 * 109.47002 * 61.19097 * 12 9 7 31 31 H 1.09000 * 109.63176 * 67.54839 * 14 13 12 32 32 H 1.09006 * 109.62751 * 187.93396 * 14 13 12 33 33 H 1.08997 * 109.38737 * 69.80667 * 15 14 13 34 34 H 1.09006 * 109.38410 * 189.60686 * 15 14 13 35 35 H 1.08007 * 119.82378 * 0.17697 * 17 16 15 36 36 H 1.08001 * 120.08460 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.07044 * 179.89205 * 19 18 17 38 38 H 1.07998 * 119.81526 * 179.97438 * 20 19 18 39 39 H 0.96992 * 120.00469 * 4.99766 * 25 24 22 40 40 H 0.97001 * 119.99550 * 185.00241 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5111 -4.9341 -0.0293 14 6 0.5232 -4.9976 1.0596 15 6 1.2310 -4.6780 2.3766 16 6 2.4699 -5.5251 2.5138 17 6 3.0507 -5.6497 3.7669 18 6 4.1886 -6.4127 3.9355 19 6 4.7526 -7.0558 2.8493 20 6 4.1745 -6.9336 1.6019 21 6 3.0297 -6.1689 1.4312 22 6 2.4304 -6.0735 0.0526 23 1 1.8865 -6.9919 -0.1682 24 6 3.5335 -5.8973 -0.9589 25 7 3.7727 -6.8614 -1.8698 26 8 4.2058 -4.8880 -0.9533 27 1 -0.4850 0.8400 -0.0004 28 1 0.9112 -2.4531 -1.9964 29 1 2.8860 -3.5923 -0.8796 30 1 2.8578 -3.6164 0.8999 31 1 -0.2658 -4.2669 0.8813 32 1 0.0924 -5.9978 1.1053 33 1 1.5096 -3.6243 2.3913 34 1 0.5582 -4.8861 3.2087 35 1 2.6107 -5.1467 4.6153 36 1 4.6371 -6.5071 4.9134 37 1 5.6438 -7.6524 2.9765 38 1 4.6161 -7.4360 0.7540 39 1 3.1901 -7.6352 -1.9216 40 1 4.5277 -6.7816 -2.4736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929967516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:03 Heat of formation + Delta-G solvation = -44.979845 kcal Electronic energy + Delta-G solvation = -24268.122000 eV Core-core repulsion = 20854.901135 eV Total energy + Delta-G solvation = -3413.220866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93456 -38.65974 -37.17715 -34.95048 -33.64703 -32.46625 -31.98874 -31.02989 -29.13600 -28.34516 -25.60452 -24.28754 -22.99850 -22.48142 -20.75542 -20.33371 -18.87644 -17.40654 -16.91251 -16.74880 -16.24467 -15.61221 -15.34710 -14.76500 -14.52179 -14.24924 -14.12498 -13.74236 -13.60898 -13.30137 -13.03841 -12.89311 -12.38695 -12.15298 -12.08425 -11.72982 -11.41832 -11.11249 -10.95130 -10.86265 -10.76964 -10.59553 -10.36237 -9.98102 -9.70129 -9.44999 -8.74053 -8.62606 -8.46192 -8.43546 -7.95679 -7.73268 -5.93258 -4.09356 1.39182 1.46406 2.72745 3.35225 3.39228 3.43021 3.51895 3.88048 4.41436 4.60455 4.77465 4.89015 4.99736 5.05497 5.07826 5.28400 5.34587 5.37421 5.55737 5.65787 5.72397 5.77338 6.05671 6.08733 6.29820 6.38195 6.43498 6.45851 6.54411 6.60074 6.72438 6.72896 6.83884 7.07305 7.22139 7.34571 7.52452 7.60204 7.87599 7.97274 8.31166 8.41880 8.95498 9.54293 9.70272 11.10932 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.005658 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.361304 B = 4947.867089 C = 5417.335073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.887 3.113 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.568 4.568 8 H 0.055 0.945 9 C 0.233 3.767 10 H 0.054 0.946 11 O -0.559 6.559 12 C 0.016 3.984 13 N -0.501 5.501 14 C 0.057 3.943 15 C -0.128 4.128 16 C -0.053 4.053 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.111 4.111 21 C -0.100 4.100 22 C 0.103 3.897 23 H 0.099 0.901 24 C 0.529 3.471 25 N -0.857 5.857 26 O -0.516 6.516 27 H 0.260 0.740 28 H 0.345 0.655 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.399 0.601 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -17.613 3.191 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.607 4.607 8 H 0.073 0.927 9 C 0.175 3.825 10 H 0.072 0.928 11 O -0.361 6.361 12 C -0.110 4.110 13 N -0.224 5.224 14 C -0.071 4.071 15 C -0.166 4.166 16 C -0.053 4.053 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.147 4.147 20 C -0.130 4.130 21 C -0.102 4.102 22 C -0.009 4.009 23 H 0.117 0.883 24 C 0.313 3.687 25 N -0.421 5.421 26 O -0.390 6.390 27 H 0.069 0.931 28 H 0.189 0.811 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.228 0.772 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.632 -16.883 3.335 17.822 hybrid contribution 1.624 0.677 0.235 1.775 sum 6.256 -16.206 3.570 17.735 Atomic orbital electron populations 1.70066 1.05811 1.26367 1.47597 1.25001 0.94672 0.98939 0.94003 0.86760 0.79736 0.83282 0.78750 1.21251 1.20257 1.20141 1.21650 0.93331 0.91517 1.54192 0.92719 1.19429 0.87727 0.89039 0.86280 0.92844 1.86471 1.39199 1.94955 1.15469 1.23527 0.97432 0.87888 1.02172 1.62816 1.13599 1.01967 1.43990 1.22235 0.95542 1.02150 0.87160 1.21282 0.94306 1.00744 1.00238 1.19634 0.97017 0.96187 0.92493 1.21110 0.96490 0.99412 0.96808 1.21054 0.96167 0.97720 0.98662 1.20972 1.00036 1.00766 0.92892 1.21017 0.95519 0.99038 0.97380 1.19924 0.96503 0.98564 0.95181 1.20634 0.92488 0.98171 0.89654 0.88279 1.20279 0.84635 0.82641 0.81164 1.43884 1.34283 1.25151 1.38827 1.90758 1.49019 1.26912 1.72289 0.93065 0.81148 0.88934 0.94706 0.88098 0.91517 0.88495 0.90406 0.85977 0.86238 0.86352 0.86685 0.77249 0.77018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.77 12.84 55.43 0.71 -25.06 16 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.57 -16.28 8.72 -34.44 -0.30 -16.58 16 8 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.23 6.04 2.10 -27.88 -0.06 5.98 16 10 H 0.05 1.46 5.62 -51.93 -0.29 1.17 16 11 O -0.56 -14.81 12.58 -35.23 -0.44 -15.25 16 12 C 0.02 0.37 2.90 -3.82 -0.01 0.36 16 13 N -0.50 -9.26 4.82 -229.54 -1.11 -10.37 16 14 C 0.06 0.97 5.40 -3.73 -0.02 0.95 16 15 C -0.13 -2.08 5.04 -27.93 -0.14 -2.22 16 16 C -0.05 -0.84 5.05 -104.60 -0.53 -1.37 16 17 C -0.12 -1.68 9.66 -39.50 -0.38 -2.06 16 18 C -0.12 -1.48 10.05 -39.65 -0.40 -1.87 16 19 C -0.13 -1.60 10.05 -39.65 -0.40 -2.00 16 20 C -0.11 -1.52 9.08 -39.48 -0.36 -1.87 16 21 C -0.10 -1.54 4.88 -104.62 -0.51 -2.05 16 22 C 0.10 1.58 2.72 -70.20 -0.19 1.39 16 23 H 0.10 1.22 7.91 -51.93 -0.41 0.81 16 24 C 0.53 8.22 5.52 -10.99 -0.06 8.16 16 25 N -0.86 -8.67 8.87 31.22 0.28 -8.39 16 26 O -0.52 -10.49 14.34 5.56 0.08 -10.41 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.35 8.59 9.02 45.56 0.41 9.00 16 29 H 0.09 2.27 5.43 -51.93 -0.28 1.99 16 30 H 0.03 0.83 5.77 -51.93 -0.30 0.53 16 31 H 0.10 1.95 6.73 -51.93 -0.35 1.60 16 32 H 0.07 0.95 8.05 -51.93 -0.42 0.54 16 33 H 0.10 1.87 5.96 -51.93 -0.31 1.56 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.12 1.37 7.33 -52.49 -0.38 0.99 16 39 H 0.40 2.72 8.66 -40.82 -0.35 2.37 16 40 H 0.40 3.53 8.93 -40.82 -0.36 3.17 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -34.50 318.64 -8.44 -42.94 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -4.29 Total: 15.81 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.45 Total: -11.01 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.12 Total: -43.81 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.36 Total: -25.66 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.50 -8.44 -42.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929967516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.040 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds