Wall clock time and date at job start Tue Mar 31 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47465 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47473 * 119.99990 * 3 2 1 6 6 H 1.48498 * 109.47243 * 240.00149 * 3 2 1 7 7 C 1.37879 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99993 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47462 * 299.99950 * 9 7 2 11 11 O 1.42894 * 109.47018 * 60.00503 * 9 7 2 12 12 C 1.53008 * 109.46988 * 180.02562 * 9 7 2 13 13 N 1.46897 * 109.47041 * 181.19127 * 12 9 7 14 14 C 1.47163 * 111.00067 * 306.44734 * 13 12 9 15 15 C 1.52893 * 108.51884 * 307.84202 * 14 13 12 16 16 C 1.50712 * 109.96682 * 309.65106 * 15 14 13 17 17 C 1.38677 * 118.49342 * 196.84871 * 16 15 14 18 18 C 1.38031 * 120.35131 * 180.20196 * 17 16 15 19 19 C 1.38255 * 119.83135 * 0.02562 * 18 17 16 20 20 C 1.38022 * 119.86732 * 359.90829 * 19 18 17 21 21 C 1.37831 * 121.66289 * 16.90364 * 16 15 14 22 22 C 1.46629 * 111.00050 * 183.46705 * 13 12 9 23 23 H 1.08997 * 109.30553 * 191.13012 * 22 13 12 24 24 C 1.50702 * 109.30507 * 310.51543 * 22 13 12 25 25 N 1.34774 * 119.99860 * 235.40193 * 24 22 13 26 26 O 1.21281 * 119.99633 * 55.39655 * 24 22 13 27 27 H 0.96998 * 120.00153 * 0.02562 * 1 2 3 28 28 H 0.96696 * 114.00436 * 55.02246 * 11 9 7 29 29 H 1.09004 * 109.47020 * 301.19598 * 12 9 7 30 30 H 1.08999 * 109.47002 * 61.19097 * 12 9 7 31 31 H 1.09000 * 109.63176 * 67.54839 * 14 13 12 32 32 H 1.09006 * 109.62751 * 187.93396 * 14 13 12 33 33 H 1.08997 * 109.38737 * 69.80667 * 15 14 13 34 34 H 1.09006 * 109.38410 * 189.60686 * 15 14 13 35 35 H 1.08007 * 119.82378 * 0.17697 * 17 16 15 36 36 H 1.08001 * 120.08460 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.07044 * 179.89205 * 19 18 17 38 38 H 1.07998 * 119.81526 * 179.97438 * 20 19 18 39 39 H 0.96992 * 120.00469 * 4.99766 * 25 24 22 40 40 H 0.97001 * 119.99550 * 185.00241 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5111 -4.9341 -0.0293 14 6 0.5232 -4.9976 1.0596 15 6 1.2310 -4.6780 2.3766 16 6 2.4699 -5.5251 2.5138 17 6 3.0507 -5.6497 3.7669 18 6 4.1886 -6.4127 3.9355 19 6 4.7526 -7.0558 2.8493 20 6 4.1745 -6.9336 1.6019 21 6 3.0297 -6.1689 1.4312 22 6 2.4304 -6.0735 0.0526 23 1 1.8865 -6.9919 -0.1682 24 6 3.5335 -5.8973 -0.9589 25 7 3.7727 -6.8614 -1.8698 26 8 4.2058 -4.8880 -0.9533 27 1 -0.4850 0.8400 -0.0004 28 1 0.9112 -2.4531 -1.9964 29 1 2.8860 -3.5923 -0.8796 30 1 2.8578 -3.6164 0.8999 31 1 -0.2658 -4.2669 0.8813 32 1 0.0924 -5.9978 1.1053 33 1 1.5096 -3.6243 2.3913 34 1 0.5582 -4.8861 3.2087 35 1 2.6107 -5.1467 4.6153 36 1 4.6371 -6.5071 4.9134 37 1 5.6438 -7.6524 2.9765 38 1 4.6161 -7.4360 0.7540 39 1 3.1901 -7.6352 -1.9216 40 1 4.5277 -6.7816 -2.4736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929967516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:03 Heat of formation + Delta-G solvation = -74.359786 kcal Electronic energy + Delta-G solvation = -24269.396010 eV Core-core repulsion = 20854.901135 eV Total energy + Delta-G solvation = -3414.494875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18005 -39.82592 -38.65345 -36.80719 -34.79317 -34.22183 -33.60199 -32.31761 -30.28935 -30.17772 -27.34522 -25.75617 -24.49817 -23.55638 -22.29649 -21.62524 -20.28467 -19.11034 -18.27101 -17.93944 -17.55320 -16.90554 -16.75317 -16.52815 -16.24217 -15.68139 -15.47419 -15.16011 -15.12539 -14.79047 -14.37841 -14.20727 -14.00762 -13.54614 -13.45520 -13.16196 -12.93040 -12.85514 -12.72332 -12.63189 -12.25991 -12.07811 -12.01886 -11.65843 -11.19980 -10.79674 -10.71152 -10.43621 -9.98402 -9.72594 -9.54079 -9.24262 -8.14838 -6.39256 0.34586 0.41502 1.36427 1.38322 1.46610 1.51019 2.37083 2.47069 2.84434 3.09915 3.15498 3.66487 3.73801 3.93703 4.04020 4.11503 4.14662 4.24623 4.33198 4.35697 4.48848 4.59882 4.60807 4.71827 4.75466 4.96033 4.98133 5.05404 5.21612 5.30219 5.45058 5.54377 5.58844 5.62536 5.77278 5.94038 5.98410 6.05694 6.13529 6.17450 6.47393 6.72249 7.32882 7.37146 7.57238 8.89077 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.005658 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.361304 B = 4947.867089 C = 5417.335073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.032 3.968 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.590 4.590 8 H 0.043 0.957 9 C 0.238 3.762 10 H 0.033 0.967 11 O -0.568 6.568 12 C 0.050 3.950 13 N -0.508 5.508 14 C 0.059 3.941 15 C -0.119 4.119 16 C -0.079 4.079 17 C -0.131 4.131 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.117 4.117 22 C 0.101 3.899 23 H 0.136 0.864 24 C 0.527 3.473 25 N -0.827 5.827 26 O -0.572 6.572 27 H 0.263 0.737 28 H 0.350 0.650 29 H 0.074 0.926 30 H 0.014 0.986 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.132 0.868 39 H 0.419 0.581 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -19.557 3.530 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.170 4.170 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.628 4.628 8 H 0.061 0.939 9 C 0.180 3.820 10 H 0.050 0.950 11 O -0.371 6.371 12 C -0.077 4.077 13 N -0.230 5.230 14 C -0.069 4.069 15 C -0.158 4.158 16 C -0.080 4.080 17 C -0.149 4.149 18 C -0.135 4.135 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.119 4.119 22 C -0.011 4.011 23 H 0.154 0.846 24 C 0.311 3.689 25 N -0.392 5.392 26 O -0.451 6.451 27 H 0.072 0.928 28 H 0.194 0.806 29 H 0.092 0.908 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.150 0.850 39 H 0.251 0.749 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.845 -18.897 3.649 20.114 hybrid contribution 1.258 1.158 0.138 1.715 sum 7.102 -17.739 3.786 19.480 Atomic orbital electron populations 1.70179 1.07236 1.27428 1.48221 1.25778 0.95528 1.02393 0.93340 0.85711 0.78577 0.78992 0.78908 1.20125 1.19713 1.19606 1.21951 0.92985 0.93332 1.54570 0.93919 1.19265 0.87671 0.89843 0.85246 0.94973 1.86424 1.39722 1.95054 1.15860 1.22875 0.95747 0.88954 1.00153 1.62673 1.14161 1.01313 1.44902 1.22202 0.94517 1.03003 0.87154 1.21117 0.95456 0.98538 1.00661 1.19679 0.97324 0.97204 0.93760 1.21346 0.97224 0.99849 0.96506 1.21436 0.95325 0.96551 1.00214 1.21396 1.00581 1.00242 0.92245 1.21251 0.94877 0.98847 0.98685 1.20002 0.97549 0.99560 0.94752 1.20811 0.92391 0.97769 0.90170 0.84619 1.20388 0.84110 0.82653 0.81774 1.43609 1.34353 1.24342 1.36929 1.90739 1.51046 1.29388 1.73879 0.92813 0.80612 0.90809 0.96780 0.91259 0.88121 0.92682 0.88320 0.84920 0.83291 0.83270 0.85045 0.74887 0.75841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.66 12.84 21.45 0.28 -54.38 16 2 C 0.03 1.90 5.40 84.66 0.46 2.36 16 3 Si 0.95 45.75 29.54 68.60 2.03 47.77 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.59 -35.15 8.72 25.60 0.22 -34.92 16 8 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 9 C 0.24 12.94 2.10 29.85 0.06 13.00 16 10 H 0.03 1.89 5.62 -2.39 -0.01 1.88 16 11 O -0.57 -31.27 12.58 -148.98 -1.87 -33.14 16 12 C 0.05 2.37 2.90 86.31 0.25 2.62 16 13 N -0.51 -19.01 4.82 -880.12 -4.24 -23.26 16 14 C 0.06 2.04 5.40 86.22 0.47 2.50 16 15 C -0.12 -4.03 5.04 29.82 0.15 -3.88 16 16 C -0.08 -2.48 5.05 -19.85 -0.10 -2.58 16 17 C -0.13 -3.52 9.66 22.33 0.22 -3.30 16 18 C -0.12 -2.62 10.05 22.22 0.22 -2.40 16 19 C -0.13 -2.76 10.05 22.22 0.22 -2.54 16 20 C -0.12 -2.95 9.08 22.34 0.20 -2.75 16 21 C -0.12 -3.47 4.88 -19.86 -0.10 -3.56 16 22 C 0.10 2.95 2.72 43.45 0.12 3.07 16 23 H 0.14 2.92 7.91 -2.39 -0.02 2.90 16 24 C 0.53 15.81 5.52 87.66 0.48 16.29 16 25 N -0.83 -14.70 8.87 -173.53 -1.54 -16.24 16 26 O -0.57 -23.53 14.34 -3.03 -0.04 -23.58 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.35 18.10 9.02 -74.06 -0.67 17.43 16 29 H 0.07 3.79 5.43 -2.39 -0.01 3.77 16 30 H 0.01 0.71 5.77 -2.39 -0.01 0.69 16 31 H 0.07 2.82 6.73 -2.39 -0.02 2.80 16 32 H 0.10 2.76 8.05 -2.38 -0.02 2.74 16 33 H 0.05 2.30 5.96 -2.39 -0.01 2.28 16 34 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 35 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.13 2.74 7.33 -2.91 -0.02 2.72 16 39 H 0.42 4.26 8.66 -92.71 -0.80 3.45 16 40 H 0.41 6.27 8.93 -92.71 -0.83 5.45 16 Total: -1.00 -77.73 318.64 -3.71 -81.44 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -1.19 Total: 37.49 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 2.88 Total: -16.10 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -5.51 Total: -93.88 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -1.92 Total: -56.72 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.73 -3.71 -81.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929967516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.079 kcal (2) G-P(sol) polarization free energy of solvation -77.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds