Wall clock time and date at job start Tue Mar 31 2020 06:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99706 * 2 1 4 4 H 1.48493 * 109.47025 * 240.00260 * 3 2 1 5 5 H 1.48499 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46551 * 120.00266 * 3 2 1 7 7 C 1.37872 * 120.00604 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00710 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99467 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47500 * 300.00487 * 9 7 2 11 11 O 1.42902 * 109.47000 * 60.00833 * 9 7 2 12 12 C 1.53002 * 109.47096 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47246 * 172.59285 * 12 9 7 14 14 C 1.47158 * 110.99959 * 64.46500 * 13 12 9 15 15 C 1.52903 * 108.50474 * 52.14848 * 14 13 12 16 16 C 1.50719 * 109.95200 * 50.40602 * 15 14 13 17 17 C 1.38674 * 118.48328 * 163.25673 * 16 15 14 18 18 C 1.38034 * 120.34965 * 179.78293 * 17 16 15 19 19 C 1.38258 * 119.82309 * 0.20540 * 18 17 16 20 20 C 1.38016 * 119.87119 * 359.56770 * 19 18 17 21 21 C 1.37833 * 121.66056 * 343.09804 * 16 15 14 22 22 C 1.46643 * 111.00201 * 187.45243 * 13 12 9 23 23 H 1.08997 * 109.26969 * 168.86735 * 22 13 12 24 24 C 1.50698 * 109.26922 * 49.35480 * 22 13 12 25 25 N 1.34780 * 119.99757 * 115.34763 * 24 22 13 26 26 O 1.21281 * 120.00437 * 295.35453 * 24 22 13 27 27 H 0.97003 * 120.00443 * 359.97438 * 1 2 3 28 28 H 0.96694 * 114.00296 * 53.10313 * 11 9 7 29 29 H 1.09009 * 109.46942 * 52.59668 * 12 9 7 30 30 H 1.09002 * 109.47548 * 292.60408 * 12 9 7 31 31 H 1.09000 * 109.63060 * 292.44831 * 14 13 12 32 32 H 1.08994 * 109.63645 * 171.85191 * 14 13 12 33 33 H 1.09004 * 109.38849 * 290.26178 * 15 14 13 34 34 H 1.09000 * 109.31331 * 170.50288 * 15 14 13 35 35 H 1.08003 * 119.82440 * 359.79928 * 17 16 15 36 36 H 1.07997 * 120.08867 * 179.97438 * 18 17 16 37 37 H 1.08006 * 120.06600 * 179.80148 * 19 18 17 38 38 H 1.08007 * 119.80944 * 180.30969 * 20 19 18 39 39 H 0.96997 * 119.99816 * 5.03991 * 25 24 22 40 40 H 0.97004 * 119.99983 * 185.03392 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1671 12 6 2.2453 -3.6620 -0.0005 13 7 1.5197 -4.9267 0.1780 14 6 0.6261 -5.1874 -0.9617 15 6 1.4390 -5.0731 -2.2518 16 6 2.6899 -5.9072 -2.1470 17 6 3.3748 -6.2212 -3.3112 18 6 4.5274 -6.9790 -3.2595 19 6 4.9991 -7.4309 -2.0410 20 6 4.3208 -7.1148 -0.8813 21 6 3.1613 -6.3548 -0.9316 22 6 2.4502 -6.0454 0.3596 23 1 1.8954 -6.9257 0.6841 24 6 3.4658 -5.6817 1.4120 25 7 3.5093 -6.3671 2.5717 26 8 4.2438 -4.7724 1.2154 27 1 -0.4851 0.8400 0.0004 28 1 0.9061 -2.4240 -1.9947 29 1 2.9560 -3.5325 0.8159 30 1 2.7817 -3.6815 -0.9492 31 1 -0.1798 -4.4535 -0.9706 32 1 0.2101 -6.1914 -0.8789 33 1 1.7118 -4.0307 -2.4164 34 1 0.8375 -5.4265 -3.0893 35 1 3.0046 -5.8708 -4.2634 36 1 5.0572 -7.2215 -4.1688 37 1 5.8988 -8.0268 -1.9963 38 1 4.6930 -7.4641 0.0706 39 1 2.9374 -7.1399 2.7001 40 1 4.1126 -6.0874 3.2780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929967517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:06 Heat of formation + Delta-G solvation = -43.079186 kcal Electronic energy + Delta-G solvation = -24325.278465 eV Core-core repulsion = 20912.140019 eV Total energy + Delta-G solvation = -3413.138447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.92702 -38.64864 -37.25669 -34.94953 -33.59362 -32.49781 -32.01503 -31.05041 -29.10941 -28.40070 -25.51876 -24.30984 -22.82232 -22.46732 -20.94095 -20.39454 -18.75114 -17.36386 -16.95072 -16.74352 -16.27985 -15.66414 -15.28724 -14.80726 -14.53934 -14.24932 -14.04635 -13.99162 -13.58356 -13.20201 -13.06656 -12.93748 -12.29170 -12.16483 -11.94663 -11.81439 -11.33928 -11.25125 -10.95144 -10.89725 -10.76603 -10.57872 -10.19478 -10.00168 -9.63967 -9.39785 -8.80112 -8.64293 -8.50825 -8.43728 -8.06944 -7.67355 -5.94578 -4.10730 1.41365 1.48295 2.71902 3.34684 3.38737 3.42619 3.55488 3.90287 4.41230 4.62989 4.78923 4.92402 5.01851 5.08003 5.09444 5.29989 5.32847 5.41442 5.59875 5.67646 5.77720 5.81267 6.07279 6.09988 6.23244 6.33264 6.47502 6.48361 6.56334 6.70907 6.74108 6.80986 6.87634 7.09155 7.28091 7.37388 7.49350 7.62539 7.86823 8.03771 8.28601 8.42190 8.94014 9.42442 9.64658 11.09526 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.005560 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.031560 B = 5035.051591 C = 5465.577553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.237 3.763 10 H 0.061 0.939 11 O -0.563 6.563 12 C 0.009 3.991 13 N -0.507 5.507 14 C 0.053 3.947 15 C -0.119 4.119 16 C -0.057 4.057 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.097 4.097 22 C 0.102 3.898 23 H 0.098 0.902 24 C 0.530 3.470 25 N -0.855 5.855 26 O -0.518 6.518 27 H 0.260 0.740 28 H 0.341 0.659 29 H 0.098 0.902 30 H 0.032 0.968 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.399 0.601 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 -17.461 -1.783 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.605 4.605 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.078 0.922 11 O -0.367 6.367 12 C -0.118 4.118 13 N -0.230 5.230 14 C -0.074 4.074 15 C -0.157 4.157 16 C -0.057 4.057 17 C -0.140 4.140 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.127 4.127 21 C -0.099 4.099 22 C -0.011 4.011 23 H 0.116 0.884 24 C 0.314 3.686 25 N -0.419 5.419 26 O -0.392 6.392 27 H 0.070 0.930 28 H 0.186 0.814 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.228 0.772 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.483 -16.789 -1.174 17.417 hybrid contribution 1.637 0.628 -0.718 1.895 sum 6.120 -16.161 -1.892 17.384 Atomic orbital electron populations 1.70067 1.05800 1.26391 1.47458 1.25004 0.94678 0.98957 0.93971 0.86753 0.79724 0.83252 0.78751 1.20228 1.21259 1.20174 1.21602 0.93309 0.91370 1.54238 0.92692 1.19344 0.87943 0.88940 0.85845 0.92171 1.86489 1.40929 1.93339 1.15948 1.23633 0.98069 0.88289 1.01795 1.62901 1.17439 1.01316 1.41326 1.22510 0.96719 1.01980 0.86228 1.21245 0.93622 1.00255 1.00616 1.19724 0.97197 0.96683 0.92111 1.21099 0.95839 0.99191 0.97848 1.21048 0.96505 0.98491 0.97639 1.20965 0.99957 1.01139 0.92655 1.20999 0.95011 0.98458 0.98199 1.19918 0.96358 0.98806 0.94865 1.20665 0.92413 0.97283 0.90704 0.88380 1.20285 0.84124 0.81573 0.82662 1.43860 1.46162 1.34133 1.17751 1.90732 1.40659 1.28922 1.78898 0.93050 0.81372 0.88397 0.95019 0.85941 0.92433 0.88834 0.90665 0.86072 0.86309 0.86404 0.86843 0.77240 0.76942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 12.84 55.43 0.71 -24.82 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.57 -16.10 8.69 -34.44 -0.30 -16.40 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.24 6.09 2.91 -27.88 -0.08 6.01 16 10 H 0.06 1.74 8.14 -51.93 -0.42 1.32 16 11 O -0.56 -13.70 9.07 -35.23 -0.32 -14.02 16 12 C 0.01 0.20 3.50 -3.83 -0.01 0.18 16 13 N -0.51 -9.31 4.89 -229.54 -1.12 -10.43 16 14 C 0.05 0.88 5.38 -3.73 -0.02 0.86 16 15 C -0.12 -1.86 4.92 -27.92 -0.14 -2.00 16 16 C -0.06 -0.88 5.09 -104.60 -0.53 -1.42 16 17 C -0.12 -1.68 9.66 -39.50 -0.38 -2.06 16 18 C -0.12 -1.49 10.05 -39.65 -0.40 -1.89 16 19 C -0.13 -1.64 10.05 -39.66 -0.40 -2.03 16 20 C -0.11 -1.51 9.07 -39.48 -0.36 -1.87 16 21 C -0.10 -1.51 4.89 -104.63 -0.51 -2.02 16 22 C 0.10 1.57 2.72 -70.20 -0.19 1.38 16 23 H 0.10 1.22 7.91 -51.93 -0.41 0.81 16 24 C 0.53 8.39 5.35 -10.98 -0.06 8.33 16 25 N -0.85 -9.10 8.87 31.22 0.28 -8.82 16 26 O -0.52 -10.60 14.61 5.56 0.08 -10.52 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.34 7.73 7.40 45.56 0.34 8.06 16 29 H 0.10 2.41 4.93 -51.92 -0.26 2.15 16 30 H 0.03 0.73 5.40 -51.93 -0.28 0.45 16 31 H 0.12 2.33 5.81 -51.93 -0.30 2.02 16 32 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.09 1.64 4.63 -51.93 -0.24 1.40 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.11 1.42 7.33 -52.48 -0.38 1.03 16 39 H 0.40 2.88 8.67 -40.82 -0.35 2.53 16 40 H 0.40 3.80 8.93 -40.82 -0.36 3.44 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -33.69 314.38 -8.46 -42.15 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -4.33 Total: 15.67 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.48 Total: -10.75 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.13 Total: -44.07 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.24 Total: -24.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.69 -8.46 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929967517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.929 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds