Wall clock time and date at job start Tue Mar 31 2020 06:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99706 * 2 1 4 4 H 1.48493 * 109.47025 * 240.00260 * 3 2 1 5 5 H 1.48499 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46551 * 120.00266 * 3 2 1 7 7 C 1.37872 * 120.00604 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00710 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99467 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47500 * 300.00487 * 9 7 2 11 11 O 1.42902 * 109.47000 * 60.00833 * 9 7 2 12 12 C 1.53002 * 109.47096 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47246 * 172.59285 * 12 9 7 14 14 C 1.47158 * 110.99959 * 64.46500 * 13 12 9 15 15 C 1.52903 * 108.50474 * 52.14848 * 14 13 12 16 16 C 1.50719 * 109.95200 * 50.40602 * 15 14 13 17 17 C 1.38674 * 118.48328 * 163.25673 * 16 15 14 18 18 C 1.38034 * 120.34965 * 179.78293 * 17 16 15 19 19 C 1.38258 * 119.82309 * 0.20540 * 18 17 16 20 20 C 1.38016 * 119.87119 * 359.56770 * 19 18 17 21 21 C 1.37833 * 121.66056 * 343.09804 * 16 15 14 22 22 C 1.46643 * 111.00201 * 187.45243 * 13 12 9 23 23 H 1.08997 * 109.26969 * 168.86735 * 22 13 12 24 24 C 1.50698 * 109.26922 * 49.35480 * 22 13 12 25 25 N 1.34780 * 119.99757 * 115.34763 * 24 22 13 26 26 O 1.21281 * 120.00437 * 295.35453 * 24 22 13 27 27 H 0.97003 * 120.00443 * 359.97438 * 1 2 3 28 28 H 0.96694 * 114.00296 * 53.10313 * 11 9 7 29 29 H 1.09009 * 109.46942 * 52.59668 * 12 9 7 30 30 H 1.09002 * 109.47548 * 292.60408 * 12 9 7 31 31 H 1.09000 * 109.63060 * 292.44831 * 14 13 12 32 32 H 1.08994 * 109.63645 * 171.85191 * 14 13 12 33 33 H 1.09004 * 109.38849 * 290.26178 * 15 14 13 34 34 H 1.09000 * 109.31331 * 170.50288 * 15 14 13 35 35 H 1.08003 * 119.82440 * 359.79928 * 17 16 15 36 36 H 1.07997 * 120.08867 * 179.97438 * 18 17 16 37 37 H 1.08006 * 120.06600 * 179.80148 * 19 18 17 38 38 H 1.08007 * 119.80944 * 180.30969 * 20 19 18 39 39 H 0.96997 * 119.99816 * 5.03991 * 25 24 22 40 40 H 0.97004 * 119.99983 * 185.03392 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1671 12 6 2.2453 -3.6620 -0.0005 13 7 1.5197 -4.9267 0.1780 14 6 0.6261 -5.1874 -0.9617 15 6 1.4390 -5.0731 -2.2518 16 6 2.6899 -5.9072 -2.1470 17 6 3.3748 -6.2212 -3.3112 18 6 4.5274 -6.9790 -3.2595 19 6 4.9991 -7.4309 -2.0410 20 6 4.3208 -7.1148 -0.8813 21 6 3.1613 -6.3548 -0.9316 22 6 2.4502 -6.0454 0.3596 23 1 1.8954 -6.9257 0.6841 24 6 3.4658 -5.6817 1.4120 25 7 3.5093 -6.3671 2.5717 26 8 4.2438 -4.7724 1.2154 27 1 -0.4851 0.8400 0.0004 28 1 0.9061 -2.4240 -1.9947 29 1 2.9560 -3.5325 0.8159 30 1 2.7817 -3.6815 -0.9492 31 1 -0.1798 -4.4535 -0.9706 32 1 0.2101 -6.1914 -0.8789 33 1 1.7118 -4.0307 -2.4164 34 1 0.8375 -5.4265 -3.0893 35 1 3.0046 -5.8708 -4.2634 36 1 5.0572 -7.2215 -4.1688 37 1 5.8988 -8.0268 -1.9963 38 1 4.6930 -7.4641 0.0706 39 1 2.9374 -7.1399 2.7001 40 1 4.1126 -6.0874 3.2780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929967517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:06 Heat of formation + Delta-G solvation = -70.915660 kcal Electronic energy + Delta-G solvation = -24326.485545 eV Core-core repulsion = 20912.140019 eV Total energy + Delta-G solvation = -3414.345527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17094 -39.82626 -38.73626 -36.69709 -34.76055 -34.24912 -33.58041 -32.32976 -30.44497 -29.96964 -27.28948 -25.72758 -24.29881 -23.54154 -22.54621 -21.62629 -20.10959 -19.11293 -18.27072 -17.96959 -17.60246 -16.88187 -16.70010 -16.56899 -16.23344 -15.83373 -15.35532 -15.26548 -15.01746 -14.64381 -14.40841 -14.22833 -13.99355 -13.48123 -13.34908 -13.22438 -12.92310 -12.85052 -12.70580 -12.52463 -12.19801 -12.08546 -11.93508 -11.61762 -11.07991 -10.82633 -10.70750 -10.50998 -9.94613 -9.70575 -9.51956 -9.20194 -8.14128 -6.38562 0.37424 0.44400 1.37596 1.39339 1.46856 1.48778 2.37804 2.49453 2.87022 3.10858 3.19478 3.67368 3.81942 3.98035 4.05421 4.13746 4.17015 4.27287 4.33672 4.39426 4.54036 4.61734 4.63126 4.73714 4.82019 5.03202 5.07422 5.15718 5.26674 5.41465 5.50368 5.56463 5.65089 5.65908 5.75373 5.92859 6.01598 6.08439 6.16864 6.22213 6.45743 6.72847 7.32306 7.34665 7.52545 8.89532 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.005560 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.031560 B = 5035.051591 C = 5465.577553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.033 3.967 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.588 4.588 8 H 0.044 0.956 9 C 0.245 3.755 10 H 0.021 0.979 11 O -0.562 6.562 12 C 0.039 3.961 13 N -0.516 5.516 14 C 0.055 3.945 15 C -0.111 4.111 16 C -0.081 4.081 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.116 4.116 22 C 0.101 3.899 23 H 0.133 0.867 24 C 0.526 3.474 25 N -0.828 5.828 26 O -0.572 6.572 27 H 0.263 0.737 28 H 0.349 0.651 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.419 0.581 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -19.112 -2.343 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.170 4.170 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.626 4.626 8 H 0.062 0.938 9 C 0.187 3.813 10 H 0.039 0.961 11 O -0.366 6.366 12 C -0.089 4.089 13 N -0.239 5.239 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.081 4.081 17 C -0.148 4.148 18 C -0.136 4.136 19 C -0.148 4.148 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.011 4.011 23 H 0.150 0.850 24 C 0.310 3.690 25 N -0.393 5.393 26 O -0.450 6.450 27 H 0.072 0.928 28 H 0.194 0.806 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.143 0.857 39 H 0.251 0.749 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.515 -18.499 -1.705 19.379 hybrid contribution 1.310 1.022 -0.523 1.742 sum 6.825 -17.477 -2.228 18.895 Atomic orbital electron populations 1.70178 1.07206 1.27420 1.48137 1.25766 0.95514 1.02352 0.93338 0.85710 0.78549 0.79025 0.78876 1.19458 1.20214 1.19945 1.21902 0.92990 0.93122 1.54600 0.93816 1.19037 0.87568 0.89838 0.84882 0.96089 1.86451 1.40807 1.93430 1.15947 1.23017 0.96387 0.89251 1.00205 1.62743 1.17998 1.00914 1.42244 1.22425 0.95804 1.02517 0.86432 1.21098 0.94222 0.98956 1.00655 1.19813 0.97618 0.97651 0.93043 1.21357 0.96276 0.99276 0.97907 1.21434 0.95942 0.97374 0.98898 1.21362 1.00505 1.00677 0.92209 1.21200 0.94620 0.98423 0.99419 1.19997 0.97345 0.99884 0.94582 1.20802 0.92275 0.96854 0.91184 0.84984 1.20456 0.83615 0.81163 0.83788 1.43625 1.45740 1.33707 1.16202 1.90708 1.42797 1.31427 1.80116 0.92822 0.80580 0.90622 0.96125 0.88740 0.89609 0.91553 0.88535 0.84593 0.83368 0.83609 0.85722 0.74901 0.75930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.99 12.84 21.44 0.28 -53.72 16 2 C 0.03 1.93 5.40 84.65 0.46 2.39 16 3 Si 0.95 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.59 -34.55 8.69 25.60 0.22 -34.33 16 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.24 13.17 2.91 29.85 0.09 13.26 16 10 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 11 O -0.56 -28.48 9.07 -148.98 -1.35 -29.83 16 12 C 0.04 1.81 3.50 86.31 0.30 2.11 16 13 N -0.52 -19.15 4.89 -880.13 -4.31 -23.46 16 14 C 0.06 1.84 5.38 86.22 0.46 2.30 16 15 C -0.11 -3.45 4.92 29.82 0.15 -3.31 16 16 C -0.08 -2.44 5.09 -19.85 -0.10 -2.54 16 17 C -0.13 -3.35 9.66 22.33 0.22 -3.13 16 18 C -0.12 -2.63 10.05 22.23 0.22 -2.41 16 19 C -0.13 -2.91 10.05 22.22 0.22 -2.69 16 20 C -0.12 -3.07 9.07 22.34 0.20 -2.87 16 21 C -0.12 -3.47 4.89 -19.87 -0.10 -3.56 16 22 C 0.10 3.00 2.72 43.45 0.12 3.12 16 23 H 0.13 2.95 7.91 -2.39 -0.02 2.93 16 24 C 0.53 16.34 5.35 87.66 0.47 16.81 16 25 N -0.83 -16.18 8.87 -173.53 -1.54 -17.72 16 26 O -0.57 -23.83 14.61 -3.03 -0.04 -23.87 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.35 16.47 7.40 -74.06 -0.55 15.93 16 29 H 0.08 3.89 4.93 -2.38 -0.01 3.88 16 30 H 0.02 0.99 5.40 -2.39 -0.01 0.97 16 31 H 0.09 3.69 5.81 -2.39 -0.01 3.67 16 32 H 0.09 2.35 8.05 -2.39 -0.02 2.33 16 33 H 0.07 2.41 4.63 -2.39 -0.01 2.40 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.12 2.84 7.33 -2.91 -0.02 2.82 16 39 H 0.42 4.91 8.67 -92.71 -0.80 4.10 16 40 H 0.41 7.11 8.93 -92.71 -0.83 6.28 16 Total: -1.00 -75.33 314.38 -3.08 -78.40 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -1.07 Total: 37.68 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 2.93 Total: -14.85 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -5.57 Total: -94.89 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -1.40 Total: -53.70 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.33 -3.08 -78.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929967517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.488 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds