Wall clock time and date at job start Tue Mar 31 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.64353 * 328.13430 * 10 9 7 12 12 C 1.55160 * 110.72259 * 204.99536 * 10 9 7 13 13 C 1.54903 * 101.58514 * 206.13520 * 12 10 9 14 14 N 1.47423 * 104.83345 * 37.00430 * 13 12 10 15 15 C 1.34773 * 125.64710 * 155.83340 * 14 13 12 16 16 O 1.21698 * 120.00237 * 180.02562 * 15 14 13 17 17 C 1.46660 * 120.00172 * 0.03092 * 15 14 13 18 18 O 1.34944 * 126.00384 * 0.02562 * 17 15 14 19 19 C 1.33944 * 109.37237 * 179.97438 * 18 17 15 20 20 C 1.35133 * 108.75899 * 359.97438 * 19 18 17 21 21 C 1.36473 * 126.00919 * 179.71212 * 17 15 14 22 22 C 1.51077 * 143.66717 * 0.03752 * 21 17 15 23 23 C 1.54372 * 105.24093 * 197.16030 * 22 21 17 24 24 C 1.51150 * 143.44672 * 179.97438 * 20 19 18 25 25 C 1.47020 * 108.70559 * 335.87846 * 14 13 12 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09000 * 111.00005 * 324.21008 * 12 10 9 29 29 H 1.09001 * 111.00254 * 88.05495 * 12 10 9 30 30 H 1.08994 * 110.37064 * 155.84891 * 13 12 10 31 31 H 1.09009 * 110.36401 * 278.06126 * 13 12 10 32 32 H 1.08005 * 125.62103 * 180.02562 * 19 18 17 33 33 H 1.09001 * 110.29084 * 316.09885 * 22 21 17 34 34 H 1.08997 * 110.29091 * 78.21345 * 22 21 17 35 35 H 1.08999 * 110.76603 * 91.85600 * 23 22 21 36 36 H 1.09003 * 110.75981 * 215.24040 * 23 22 21 37 37 H 1.08995 * 110.28965 * 281.80472 * 24 20 19 38 38 H 1.09005 * 110.28842 * 43.91335 * 24 20 19 39 39 H 1.08999 * 109.88183 * 241.64150 * 25 14 13 40 40 H 1.08992 * 109.88824 * 120.47488 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0008 -3.5562 -0.5393 12 6 1.1938 -4.7896 -0.6160 13 6 1.7908 -6.0434 0.0705 14 7 2.1093 -5.6070 1.4422 15 6 2.2100 -6.4113 2.5189 16 8 2.4787 -5.9395 3.6080 17 6 1.9959 -7.8554 2.3780 18 8 1.6944 -8.5048 1.2342 19 6 1.5728 -9.8147 1.4858 20 6 1.7961 -10.0271 2.8015 21 6 2.0725 -8.7793 3.3795 22 6 2.3382 -8.9541 4.8564 23 6 2.6319 -10.4584 5.0407 24 6 1.8596 -11.0996 3.8646 25 6 2.2977 -4.1489 1.4413 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 0.1429 -4.6644 -0.3552 29 1 1.3234 -4.8371 -1.6972 30 1 1.0585 -6.8504 0.0895 31 1 2.6950 -6.3647 -0.4467 32 1 1.3361 -10.5759 0.7570 33 1 3.2015 -8.3608 5.1580 34 1 1.4604 -8.6666 5.4351 35 1 3.7009 -10.6559 4.9614 36 1 2.2418 -10.8142 5.9943 37 1 0.8542 -11.3862 4.1730 38 1 2.4038 -11.9681 3.4934 39 1 3.3141 -3.9063 1.7516 40 1 1.5805 -3.6820 2.1162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969468559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:49 Heat of formation + Delta-G solvation = 3.064518 kcal Electronic energy + Delta-G solvation = -22812.308519 eV Core-core repulsion = 19401.171013 eV Total energy + Delta-G solvation = -3411.137506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.01953 -39.58616 -37.62194 -37.23369 -34.43593 -31.75028 -30.85388 -30.51622 -29.54849 -27.99521 -26.78938 -24.31638 -23.20785 -22.47548 -21.47419 -20.54260 -20.08075 -18.99663 -17.56730 -17.14677 -16.75670 -16.32749 -15.76976 -15.44204 -15.12270 -14.64053 -14.29210 -14.07584 -13.71604 -13.40082 -13.24771 -12.96214 -12.86313 -12.63076 -12.04067 -11.93314 -11.81242 -11.50298 -11.41703 -11.40352 -11.26417 -10.73303 -10.66441 -10.32541 -10.11339 -9.99983 -9.46586 -9.24028 -9.02415 -8.79997 -8.36555 -7.17437 -6.17231 -3.19606 0.99737 2.12441 2.56711 3.20535 3.23761 3.50489 3.53941 3.71133 3.81546 4.43914 4.51489 4.62559 4.75161 4.85039 4.87702 4.91132 5.14021 5.20184 5.33126 5.40750 5.47244 5.51963 5.60229 5.65447 5.70346 5.71514 5.85011 5.85661 5.91816 5.94731 5.99690 6.18795 6.20312 6.26538 6.39674 6.53287 6.76299 6.78464 7.61548 7.74285 8.17650 8.68352 9.11795 9.98469 10.11340 11.30544 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036231 B = 0.003176 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.640807 B = 8812.886659 C = 9311.124993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.341 4.341 8 H 0.068 0.932 9 N -0.723 5.723 10 C 0.177 3.823 11 H 0.071 0.929 12 C -0.142 4.142 13 C 0.102 3.898 14 N -0.603 5.603 15 C 0.607 3.393 16 O -0.523 6.523 17 C -0.050 4.050 18 O -0.152 6.152 19 C 0.001 3.999 20 C -0.219 4.219 21 C -0.113 4.113 22 C -0.055 4.055 23 C -0.119 4.119 24 C -0.045 4.045 25 C 0.084 3.916 26 H 0.256 0.744 27 H 0.370 0.630 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.208 0.792 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -24.408 3.418 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.238 4.238 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.471 4.471 8 H 0.086 0.914 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.089 0.911 12 C -0.181 4.181 13 C -0.021 4.021 14 N -0.336 5.336 15 C 0.395 3.605 16 O -0.402 6.402 17 C -0.102 4.102 18 O -0.048 6.048 19 C -0.068 4.068 20 C -0.220 4.220 21 C -0.116 4.116 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.083 4.083 25 C -0.041 4.041 26 H 0.067 0.933 27 H 0.204 0.796 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.787 -22.285 3.764 22.916 hybrid contribution -0.127 -1.919 -0.003 1.923 sum 3.660 -24.204 3.761 24.766 Atomic orbital electron populations 1.70896 1.06089 1.28522 1.52887 1.25834 0.97001 1.01142 0.99859 0.83239 0.74257 0.75450 0.75967 1.20978 1.22098 1.22132 1.20072 0.92153 0.85580 1.49334 0.91441 1.42384 1.04877 1.00426 1.88719 1.21155 0.95378 0.85839 0.91117 0.91071 1.23119 1.00547 0.94172 1.00307 1.22413 1.00094 0.97840 0.81744 1.48451 1.67853 1.09295 1.07980 1.16249 0.78372 0.82105 0.83747 1.90869 1.49980 1.73855 1.25505 1.21235 1.12170 0.92621 0.84150 1.84316 1.68522 1.18739 1.33206 1.23369 1.03853 0.83318 0.96294 1.21320 1.08525 0.97781 0.94367 1.21169 1.00783 0.92183 0.97419 1.20550 1.02798 0.96457 0.89364 1.22433 1.00682 0.94289 0.98202 1.20479 1.00888 0.95171 0.91727 1.23287 1.01621 0.76779 1.02449 0.93321 0.79591 0.90708 0.89822 0.90269 0.91234 0.77511 0.89970 0.89772 0.90779 0.90236 0.90261 0.90890 0.91911 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.79 13.70 55.49 0.76 -28.03 16 2 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 3 Si 1.08 25.73 29.92 -169.99 -5.09 20.64 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.34 -9.41 9.96 -15.06 -0.15 -9.56 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.71 5.15 -51.65 -0.27 -17.97 16 10 C 0.18 3.47 3.61 -66.10 -0.24 3.23 16 11 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 12 C -0.14 -2.21 6.71 -24.58 -0.17 -2.37 16 13 C 0.10 1.44 6.17 -2.53 -0.02 1.42 16 14 N -0.60 -10.43 3.33 -172.07 -0.57 -11.00 16 15 C 0.61 10.96 7.82 -12.86 -0.10 10.86 16 16 O -0.52 -10.96 17.19 5.19 0.09 -10.87 16 17 C -0.05 -0.76 6.93 -36.82 -0.26 -1.01 16 18 O -0.15 -1.91 7.86 4.87 0.04 -1.87 16 19 C 0.00 0.01 12.08 29.63 0.36 0.37 16 20 C -0.22 -2.31 6.93 -104.74 -0.73 -3.04 16 21 C -0.11 -1.51 6.66 -104.31 -0.69 -2.20 16 22 C -0.05 -0.61 6.75 -26.98 -0.18 -0.79 16 23 C -0.12 -0.92 7.07 -25.16 -0.18 -1.10 16 24 C -0.05 -0.35 6.77 -26.81 -0.18 -0.53 16 25 C 0.08 1.64 6.62 -3.06 -0.02 1.62 16 26 H 0.26 7.69 6.77 -40.82 -0.28 7.41 16 27 H 0.37 9.34 6.59 -40.82 -0.27 9.07 16 28 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.02 6.22 -51.93 -0.32 0.69 16 31 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.21 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -33.74 330.91 -8.25 -41.99 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.56 Total: 6.50 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.64 Total: -4.38 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.08 Total: -57.00 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.13 Total: -12.74 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.09 Total: 20.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.74 -8.25 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969468559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.055 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds