Wall clock time and date at job start Tue Mar 31 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.64353 * 328.13430 * 10 9 7 12 12 C 1.55160 * 110.72259 * 204.99536 * 10 9 7 13 13 C 1.54903 * 101.58514 * 206.13520 * 12 10 9 14 14 N 1.47423 * 104.83345 * 37.00430 * 13 12 10 15 15 C 1.34773 * 125.64710 * 155.83340 * 14 13 12 16 16 O 1.21698 * 120.00237 * 180.02562 * 15 14 13 17 17 C 1.46660 * 120.00172 * 0.03092 * 15 14 13 18 18 O 1.34944 * 126.00384 * 0.02562 * 17 15 14 19 19 C 1.33944 * 109.37237 * 179.97438 * 18 17 15 20 20 C 1.35133 * 108.75899 * 359.97438 * 19 18 17 21 21 C 1.36473 * 126.00919 * 179.71212 * 17 15 14 22 22 C 1.51077 * 143.66717 * 0.03752 * 21 17 15 23 23 C 1.54372 * 105.24093 * 197.16030 * 22 21 17 24 24 C 1.51150 * 143.44672 * 179.97438 * 20 19 18 25 25 C 1.47020 * 108.70559 * 335.87846 * 14 13 12 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.09000 * 111.00005 * 324.21008 * 12 10 9 29 29 H 1.09001 * 111.00254 * 88.05495 * 12 10 9 30 30 H 1.08994 * 110.37064 * 155.84891 * 13 12 10 31 31 H 1.09009 * 110.36401 * 278.06126 * 13 12 10 32 32 H 1.08005 * 125.62103 * 180.02562 * 19 18 17 33 33 H 1.09001 * 110.29084 * 316.09885 * 22 21 17 34 34 H 1.08997 * 110.29091 * 78.21345 * 22 21 17 35 35 H 1.08999 * 110.76603 * 91.85600 * 23 22 21 36 36 H 1.09003 * 110.75981 * 215.24040 * 23 22 21 37 37 H 1.08995 * 110.28965 * 281.80472 * 24 20 19 38 38 H 1.09005 * 110.28842 * 43.91335 * 24 20 19 39 39 H 1.08999 * 109.88183 * 241.64150 * 25 14 13 40 40 H 1.08992 * 109.88824 * 120.47488 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0008 -3.5562 -0.5393 12 6 1.1938 -4.7896 -0.6160 13 6 1.7908 -6.0434 0.0705 14 7 2.1093 -5.6070 1.4422 15 6 2.2100 -6.4113 2.5189 16 8 2.4787 -5.9395 3.6080 17 6 1.9959 -7.8554 2.3780 18 8 1.6944 -8.5048 1.2342 19 6 1.5728 -9.8147 1.4858 20 6 1.7961 -10.0271 2.8015 21 6 2.0725 -8.7793 3.3795 22 6 2.3382 -8.9541 4.8564 23 6 2.6319 -10.4584 5.0407 24 6 1.8596 -11.0996 3.8646 25 6 2.2977 -4.1489 1.4413 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 0.1429 -4.6644 -0.3552 29 1 1.3234 -4.8371 -1.6972 30 1 1.0585 -6.8504 0.0895 31 1 2.6950 -6.3647 -0.4467 32 1 1.3361 -10.5759 0.7570 33 1 3.2015 -8.3608 5.1580 34 1 1.4604 -8.6666 5.4351 35 1 3.7009 -10.6559 4.9614 36 1 2.2418 -10.8142 5.9943 37 1 0.8542 -11.3862 4.1730 38 1 2.4038 -11.9681 3.4934 39 1 3.3141 -3.9063 1.7516 40 1 1.5805 -3.6820 2.1162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969468559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:48 Heat of formation + Delta-G solvation = -19.034392 kcal Electronic energy + Delta-G solvation = -22813.266799 eV Core-core repulsion = 19401.171013 eV Total energy + Delta-G solvation = -3412.095786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.92792 -40.99795 -38.91843 -38.23272 -36.31801 -33.49863 -31.72739 -31.53032 -31.06157 -29.36122 -27.89666 -25.97390 -24.73949 -23.52006 -22.54496 -21.77282 -21.27302 -20.13911 -19.52299 -18.35026 -17.85159 -17.51292 -16.94452 -16.70094 -16.41398 -15.99273 -15.76952 -15.41884 -15.14393 -14.92612 -14.40407 -14.14142 -13.88659 -13.73636 -13.56761 -13.03838 -12.90409 -12.74405 -12.66272 -12.55044 -12.43811 -12.11767 -12.07152 -11.89365 -11.79969 -11.54513 -11.28332 -11.02306 -10.34042 -9.96786 -9.53597 -9.24964 -8.43419 -5.40034 -0.06067 1.28250 1.47529 1.58266 1.67948 1.83984 1.95632 2.02183 2.69104 3.01063 3.30719 3.46428 3.48253 3.71626 3.78504 3.88598 4.11164 4.13014 4.15577 4.17867 4.19972 4.35136 4.42953 4.59498 4.73787 4.76313 4.80015 4.84710 4.90468 4.96362 5.02819 5.06604 5.08772 5.16372 5.20926 5.30500 5.42980 5.56949 5.81695 6.28334 6.45434 6.80079 7.01718 7.90932 8.01407 9.07947 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036231 B = 0.003176 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.640807 B = 8812.886659 C = 9311.124993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.100 4.100 3 Si 1.127 2.873 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.338 4.338 8 H 0.071 0.929 9 N -0.736 5.736 10 C 0.172 3.828 11 H 0.077 0.923 12 C -0.129 4.129 13 C 0.109 3.891 14 N -0.606 5.606 15 C 0.602 3.398 16 O -0.570 6.570 17 C -0.092 4.092 18 O -0.156 6.156 19 C 0.027 3.973 20 C -0.230 4.230 21 C -0.121 4.121 22 C -0.065 4.065 23 C -0.111 4.111 24 C -0.041 4.041 25 C 0.095 3.905 26 H 0.245 0.755 27 H 0.363 0.637 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -27.739 2.289 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.292 4.292 3 Si 0.952 3.048 4 H -0.219 1.219 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.062 3.938 11 H 0.094 0.906 12 C -0.168 4.168 13 C -0.013 4.013 14 N -0.338 5.338 15 C 0.393 3.607 16 O -0.453 6.453 17 C -0.143 4.143 18 O -0.052 6.052 19 C -0.042 4.042 20 C -0.231 4.231 21 C -0.124 4.124 22 C -0.102 4.102 23 C -0.148 4.148 24 C -0.078 4.078 25 C -0.031 4.031 26 H 0.055 0.945 27 H 0.196 0.804 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.275 0.725 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.420 -25.683 2.609 26.191 hybrid contribution -0.302 -1.061 0.384 1.168 sum 4.118 -26.744 2.993 27.224 Atomic orbital electron populations 1.70999 1.07219 1.27999 1.55803 1.27224 0.97084 1.04740 1.00134 0.82642 0.73419 0.71578 0.77211 1.21915 1.20783 1.19811 1.20418 0.92519 0.86807 1.47200 0.91147 1.42535 1.04726 1.01422 1.88963 1.21346 0.96090 0.85278 0.91133 0.90550 1.23047 0.99284 0.92727 1.01707 1.22575 1.01581 0.97418 0.79680 1.48483 1.67859 1.08023 1.09421 1.16688 0.77396 0.83582 0.83081 1.90820 1.52127 1.75214 1.27100 1.20612 1.16532 0.91267 0.85870 1.84267 1.68693 1.20088 1.32172 1.24427 1.00119 0.82566 0.97106 1.21800 1.08824 0.97318 0.95164 1.21681 0.99084 0.93349 0.98321 1.20731 1.01919 0.99102 0.88466 1.22460 1.01348 0.91273 0.99710 1.20580 1.01960 0.94892 0.90407 1.22860 0.99817 0.78759 1.01648 0.94462 0.80432 0.91450 0.87225 0.88336 0.88863 0.72524 0.91822 0.90048 0.90264 0.88063 0.88907 0.88487 0.93049 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.15 13.70 21.65 0.30 -60.85 16 2 C -0.10 -5.84 5.50 84.86 0.47 -5.37 16 3 Si 1.13 52.21 29.92 68.60 2.05 54.26 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.34 -18.96 9.96 84.03 0.84 -18.12 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -36.89 5.15 -317.33 -1.63 -38.52 16 10 C 0.17 6.77 3.61 46.18 0.17 6.94 16 11 H 0.08 2.94 8.09 -2.38 -0.02 2.92 16 12 C -0.13 -3.83 6.71 31.98 0.21 -3.62 16 13 C 0.11 2.87 6.17 86.85 0.54 3.41 16 14 N -0.61 -21.30 3.33 -816.54 -2.72 -24.02 16 15 C 0.60 22.52 7.82 86.44 0.68 23.19 16 16 O -0.57 -25.49 17.19 -4.34 -0.07 -25.57 16 17 C -0.09 -2.74 6.93 24.06 0.17 -2.57 16 18 O -0.16 -3.52 7.86 -5.47 -0.04 -3.56 16 19 C 0.03 0.40 12.08 67.10 0.81 1.21 16 20 C -0.23 -4.13 6.93 -19.94 -0.14 -4.27 16 21 C -0.12 -3.16 6.66 -19.66 -0.13 -3.29 16 22 C -0.07 -1.45 6.75 30.43 0.21 -1.24 16 23 C -0.11 -1.45 7.07 31.61 0.22 -1.23 16 24 C -0.04 -0.48 6.77 30.54 0.21 -0.27 16 25 C 0.10 3.90 6.62 86.73 0.57 4.47 16 26 H 0.24 15.30 6.77 -92.71 -0.63 14.67 16 27 H 0.36 19.00 6.59 -92.71 -0.61 18.39 16 28 H 0.07 2.12 8.01 -2.39 -0.02 2.11 16 29 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.10 2.28 6.22 -2.39 -0.01 2.26 16 31 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.26 1.01 8.06 -2.91 -0.02 0.98 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.81 8.03 -2.39 -0.02 1.79 16 Total: -1.00 -77.42 330.91 3.29 -74.14 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.59 Total: 24.88 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.81 Total: -0.75 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -4.05 Total: -123.39 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.12 Total: -29.13 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.05 Total: 54.26 kcal Total: -77.42 3.29 -74.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969468559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.104 kcal (2) G-P(sol) polarization free energy of solvation -77.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds