Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48499 * 109.47237 * 274.98286 * 3 2 1 5 5 H 1.48497 * 109.47397 * 34.98569 * 3 2 1 6 6 H 1.48501 * 109.47291 * 154.98590 * 3 2 1 7 7 C 1.38813 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99789 * 187.06137 * 7 2 1 9 9 N 1.36934 * 119.99960 * 7.06874 * 7 2 1 10 10 C 1.47030 * 125.64626 * 354.87779 * 9 7 2 11 11 C 1.54322 * 107.26820 * 178.89673 * 10 9 7 12 12 C 1.55158 * 102.94371 * 337.80764 * 11 10 9 13 13 H 1.09007 * 111.00734 * 153.61664 * 12 11 10 14 14 N 1.46503 * 111.00346 * 277.42848 * 12 11 10 15 15 C 1.34773 * 120.00097 * 204.99811 * 14 12 11 16 16 O 1.21705 * 120.00014 * 359.72980 * 15 14 12 17 17 C 1.46653 * 120.00405 * 179.72283 * 15 14 12 18 18 O 1.34947 * 126.00559 * 359.69360 * 17 15 14 19 19 C 1.33941 * 109.37828 * 179.85880 * 18 17 15 20 20 C 1.35142 * 108.75696 * 0.40596 * 19 18 17 21 21 C 1.36469 * 126.01175 * 180.02562 * 17 15 14 22 22 C 1.51083 * 143.66831 * 359.97438 * 21 17 15 23 23 C 1.54375 * 105.23960 * 197.16236 * 22 21 17 24 24 C 1.51145 * 143.44696 * 179.74583 * 20 19 18 25 25 C 1.47427 * 125.65058 * 174.82697 * 9 7 2 26 26 H 0.97003 * 120.00110 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.88000 * 59.48291 * 10 9 7 28 28 H 1.08993 * 110.00832 * 298.38555 * 10 9 7 29 29 H 1.08994 * 110.72267 * 219.44522 * 11 10 9 30 30 H 1.08998 * 110.72312 * 96.16674 * 11 10 9 31 31 H 0.96996 * 120.00132 * 24.72168 * 14 12 11 32 32 H 1.08002 * 125.62196 * 180.11850 * 19 18 17 33 33 H 1.08997 * 110.28870 * 316.10909 * 22 21 17 34 34 H 1.09001 * 110.28476 * 78.12830 * 22 21 17 35 35 H 1.08997 * 110.75810 * 91.85950 * 23 22 21 36 36 H 1.09002 * 110.75858 * 215.23495 * 23 22 21 37 37 H 1.08999 * 110.28088 * 43.89497 * 24 20 19 38 38 H 1.08995 * 110.28889 * 281.78559 * 24 20 19 39 39 H 1.08999 * 110.36485 * 85.33285 * 25 9 7 40 40 H 1.09005 * 110.36335 * 323.01075 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1155 9 7 1.3334 -2.3836 -0.1449 10 6 -0.1282 -2.5322 -0.2035 11 6 -0.4286 -4.0330 -0.4004 12 6 0.8921 -4.5749 -1.0083 13 1 1.0205 -5.6337 -0.7830 14 7 0.9407 -4.3389 -2.4533 15 6 1.6987 -5.1282 -3.2400 16 8 2.3467 -6.0340 -2.7493 17 6 1.7427 -4.8957 -4.6873 18 8 1.0718 -3.9354 -5.3573 19 6 1.3566 -4.0230 -6.6631 20 6 2.2119 -5.0518 -6.8533 21 6 2.4642 -5.6164 -5.5942 22 6 3.4187 -6.7780 -5.7432 23 6 4.0628 -6.5980 -7.1346 24 6 2.9860 -5.8081 -7.9085 25 6 1.9495 -3.7171 -0.2696 26 1 -0.4850 0.8401 0.0004 27 1 -0.5254 -1.9615 -1.0428 28 1 -0.5761 -2.1834 0.7269 29 1 -1.2580 -4.1727 -1.0936 30 1 -0.6385 -4.5130 0.5555 31 1 0.4243 -3.6170 -2.8445 32 1 0.9634 -3.3806 -7.4372 33 1 4.1820 -6.7421 -4.9658 34 1 2.8757 -7.7219 -5.6957 35 1 4.9856 -6.0225 -7.0617 36 1 4.2452 -7.5648 -7.6039 37 1 3.4541 -5.1125 -8.6049 38 1 2.3270 -6.4927 -8.4426 39 1 2.1547 -4.1339 0.7164 40 1 2.8667 -3.6579 -0.8557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015403185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = 9.284829 kcal Electronic energy + Delta-G solvation = -23119.735129 eV Core-core repulsion = 19708.867356 eV Total energy + Delta-G solvation = -3410.867773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.86521 -39.36247 -37.43231 -37.14419 -33.74484 -31.88395 -30.73131 -30.41890 -29.18036 -27.66530 -26.79390 -24.53534 -23.37426 -21.95587 -20.43612 -20.14222 -19.83650 -19.54752 -17.61183 -16.80779 -16.51673 -16.07252 -15.69933 -15.21820 -14.64889 -14.35264 -14.18752 -14.06387 -13.72025 -13.40222 -13.08513 -12.82370 -12.42134 -11.93868 -11.86999 -11.81771 -11.69868 -11.35360 -11.32260 -10.94902 -10.91720 -10.73648 -10.41240 -10.12197 -9.96800 -9.89842 -9.69683 -9.33713 -8.84346 -8.59164 -8.43380 -6.81888 -5.72937 -3.04332 1.13744 2.25608 2.75563 3.36580 3.40302 3.46141 3.47671 3.53815 3.93578 4.50665 4.60085 4.75347 4.84376 4.98665 5.06779 5.28103 5.42015 5.46092 5.48633 5.52593 5.59213 5.70126 5.77358 5.81278 5.82971 5.96303 6.01518 6.08343 6.18557 6.31117 6.35318 6.47904 6.48680 6.67823 6.82694 7.02495 7.53076 7.56838 7.79655 7.83274 8.24753 8.38238 9.21872 9.82010 10.48038 11.39431 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.004167 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.468782 B = 6717.156585 C = 7358.109022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.153 4.153 12 C 0.126 3.874 13 H 0.093 0.907 14 N -0.691 5.691 15 C 0.601 3.399 16 O -0.529 6.529 17 C -0.053 4.053 18 O -0.152 6.152 19 C 0.008 3.992 20 C -0.222 4.222 21 C -0.114 4.114 22 C -0.053 4.053 23 C -0.119 4.119 24 C -0.045 4.045 25 C 0.125 3.875 26 H 0.252 0.748 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.408 0.592 32 H 0.208 0.792 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -12.213 -14.819 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.192 4.192 12 C 0.021 3.979 13 H 0.111 0.889 14 N -0.340 5.340 15 C 0.386 3.614 16 O -0.408 6.408 17 C -0.105 4.105 18 O -0.048 6.048 19 C -0.062 4.062 20 C -0.224 4.224 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.157 4.157 24 C -0.082 4.082 25 C -0.002 4.002 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.243 0.757 32 H 0.225 0.775 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.883 -12.414 -14.248 18.991 hybrid contribution 0.152 1.443 -0.312 1.484 sum 2.035 -10.971 -14.560 18.344 Atomic orbital electron populations 1.69963 1.04857 1.24982 1.57085 1.24785 0.95689 0.97560 1.02261 0.86133 0.78743 0.83676 0.77467 1.21689 1.21774 1.20657 1.19064 0.91136 0.82536 1.42703 0.90508 1.44482 1.01483 1.00945 1.86179 1.21187 0.84674 0.88129 1.01085 1.23228 0.95437 1.00400 1.00142 1.22233 0.97684 0.99537 0.78430 0.88891 1.45773 1.46758 1.33388 1.08069 1.16521 0.80143 0.82329 0.82378 1.90835 1.44352 1.32531 1.73124 1.21306 1.02330 0.94191 0.92678 1.84233 1.55831 1.46050 1.18666 1.23337 0.99819 0.99694 0.83317 1.21302 1.03717 0.99667 0.97665 1.21151 0.99323 0.98952 0.92256 1.20524 0.96348 0.94528 0.97558 1.22386 0.98133 1.00428 0.94717 1.20410 0.95674 0.97044 0.95041 1.21953 0.94871 0.86912 0.96465 0.93808 0.93433 0.93836 0.91508 0.90744 0.75677 0.77501 0.89965 0.89909 0.90817 0.90298 0.90862 0.90448 0.95251 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.36 55.49 0.57 -26.21 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.26 29.56 -169.99 -5.02 17.24 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.36 10.27 -15.06 -0.15 -6.52 16 8 H 0.08 2.13 7.84 -52.48 -0.41 1.71 16 9 N -0.60 -15.40 3.39 -170.07 -0.58 -15.97 16 10 C 0.17 4.10 5.37 -3.06 -0.02 4.08 16 11 C -0.15 -2.76 6.55 -24.90 -0.16 -2.92 16 12 C 0.13 2.32 3.43 -65.78 -0.23 2.10 16 13 H 0.09 1.62 7.54 -51.92 -0.39 1.23 16 14 N -0.69 -12.38 5.18 -53.04 -0.27 -12.65 16 15 C 0.60 10.87 7.79 -12.87 -0.10 10.77 16 16 O -0.53 -10.58 16.51 5.18 0.09 -10.49 16 17 C -0.05 -0.86 7.13 -36.83 -0.26 -1.13 16 18 O -0.15 -2.26 10.40 4.87 0.05 -2.20 16 19 C 0.01 0.09 12.08 29.63 0.36 0.45 16 20 C -0.22 -2.64 6.93 -104.74 -0.73 -3.37 16 21 C -0.11 -1.63 6.66 -104.31 -0.69 -2.33 16 22 C -0.05 -0.61 6.76 -26.97 -0.18 -0.80 16 23 C -0.12 -1.02 7.05 -25.30 -0.18 -1.20 16 24 C -0.04 -0.39 6.76 -26.96 -0.18 -0.57 16 25 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.05 1.22 7.30 -51.93 -0.38 0.84 16 28 H 0.04 1.14 7.61 -51.93 -0.40 0.74 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.41 7.22 8.42 -40.82 -0.34 6.88 16 32 H 0.21 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -32.50 332.39 -8.50 -41.00 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.71 Total: 3.30 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.64 Total: 0.98 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.28 Total: -54.83 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.14 Total: -12.70 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.50 -8.50 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015403185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.286 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds