Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48499 * 109.47237 * 274.98286 * 3 2 1 5 5 H 1.48497 * 109.47397 * 34.98569 * 3 2 1 6 6 H 1.48501 * 109.47291 * 154.98590 * 3 2 1 7 7 C 1.38813 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99789 * 187.06137 * 7 2 1 9 9 N 1.36934 * 119.99960 * 7.06874 * 7 2 1 10 10 C 1.47030 * 125.64626 * 354.87779 * 9 7 2 11 11 C 1.54322 * 107.26820 * 178.89673 * 10 9 7 12 12 C 1.55158 * 102.94371 * 337.80764 * 11 10 9 13 13 H 1.09007 * 111.00734 * 153.61664 * 12 11 10 14 14 N 1.46503 * 111.00346 * 277.42848 * 12 11 10 15 15 C 1.34773 * 120.00097 * 204.99811 * 14 12 11 16 16 O 1.21705 * 120.00014 * 359.72980 * 15 14 12 17 17 C 1.46653 * 120.00405 * 179.72283 * 15 14 12 18 18 O 1.34947 * 126.00559 * 359.69360 * 17 15 14 19 19 C 1.33941 * 109.37828 * 179.85880 * 18 17 15 20 20 C 1.35142 * 108.75696 * 0.40596 * 19 18 17 21 21 C 1.36469 * 126.01175 * 180.02562 * 17 15 14 22 22 C 1.51083 * 143.66831 * 359.97438 * 21 17 15 23 23 C 1.54375 * 105.23960 * 197.16236 * 22 21 17 24 24 C 1.51145 * 143.44696 * 179.74583 * 20 19 18 25 25 C 1.47427 * 125.65058 * 174.82697 * 9 7 2 26 26 H 0.97003 * 120.00110 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.88000 * 59.48291 * 10 9 7 28 28 H 1.08993 * 110.00832 * 298.38555 * 10 9 7 29 29 H 1.08994 * 110.72267 * 219.44522 * 11 10 9 30 30 H 1.08998 * 110.72312 * 96.16674 * 11 10 9 31 31 H 0.96996 * 120.00132 * 24.72168 * 14 12 11 32 32 H 1.08002 * 125.62196 * 180.11850 * 19 18 17 33 33 H 1.08997 * 110.28870 * 316.10909 * 22 21 17 34 34 H 1.09001 * 110.28476 * 78.12830 * 22 21 17 35 35 H 1.08997 * 110.75810 * 91.85950 * 23 22 21 36 36 H 1.09002 * 110.75858 * 215.23495 * 23 22 21 37 37 H 1.08999 * 110.28088 * 43.89497 * 24 20 19 38 38 H 1.08995 * 110.28889 * 281.78559 * 24 20 19 39 39 H 1.08999 * 110.36485 * 85.33285 * 25 9 7 40 40 H 1.09005 * 110.36335 * 323.01075 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1155 9 7 1.3334 -2.3836 -0.1449 10 6 -0.1282 -2.5322 -0.2035 11 6 -0.4286 -4.0330 -0.4004 12 6 0.8921 -4.5749 -1.0083 13 1 1.0205 -5.6337 -0.7830 14 7 0.9407 -4.3389 -2.4533 15 6 1.6987 -5.1282 -3.2400 16 8 2.3467 -6.0340 -2.7493 17 6 1.7427 -4.8957 -4.6873 18 8 1.0718 -3.9354 -5.3573 19 6 1.3566 -4.0230 -6.6631 20 6 2.2119 -5.0518 -6.8533 21 6 2.4642 -5.6164 -5.5942 22 6 3.4187 -6.7780 -5.7432 23 6 4.0628 -6.5980 -7.1346 24 6 2.9860 -5.8081 -7.9085 25 6 1.9495 -3.7171 -0.2696 26 1 -0.4850 0.8401 0.0004 27 1 -0.5254 -1.9615 -1.0428 28 1 -0.5761 -2.1834 0.7269 29 1 -1.2580 -4.1727 -1.0936 30 1 -0.6385 -4.5130 0.5555 31 1 0.4243 -3.6170 -2.8445 32 1 0.9634 -3.3806 -7.4372 33 1 4.1820 -6.7421 -4.9658 34 1 2.8757 -7.7219 -5.6957 35 1 4.9856 -6.0225 -7.0617 36 1 4.2452 -7.5648 -7.6039 37 1 3.4541 -5.1125 -8.6049 38 1 2.3270 -6.4927 -8.4426 39 1 2.1547 -4.1339 0.7164 40 1 2.8667 -3.6579 -0.8557 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015403185.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = -11.723675 kcal Electronic energy + Delta-G solvation = -23120.646126 eV Core-core repulsion = 19708.867356 eV Total energy + Delta-G solvation = -3411.778770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.88259 -40.83330 -38.87570 -38.24567 -35.47567 -33.72086 -31.70464 -31.52040 -30.91528 -29.16603 -27.96458 -26.47080 -24.51584 -22.95963 -22.01649 -21.62506 -21.14932 -20.78457 -19.01955 -18.50269 -17.59070 -17.49476 -16.86121 -16.68469 -16.08906 -15.81655 -15.66093 -15.47460 -15.06575 -14.88218 -14.08692 -14.00331 -13.86280 -13.65181 -13.61609 -12.90630 -12.84908 -12.67381 -12.63663 -12.35529 -12.15997 -12.06594 -12.05461 -12.03405 -11.87414 -11.64306 -11.35164 -10.72453 -10.33121 -10.18146 -9.56521 -8.88611 -7.88215 -5.21504 -0.00265 1.30752 1.44077 1.45210 1.54299 1.67093 2.05363 2.25120 2.47475 3.04920 3.30727 3.64013 3.65235 3.79021 3.84666 4.03326 4.13559 4.17211 4.20211 4.27895 4.53090 4.64500 4.68567 4.79432 4.82970 4.85246 4.91624 4.95990 5.00129 5.01729 5.09780 5.20053 5.33912 5.41245 5.43057 5.46490 5.63557 5.74024 5.83560 6.17825 6.43550 6.98252 7.09384 7.74631 8.39328 9.22345 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.004167 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.468782 B = 6717.156585 C = 7358.109022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.622 5.622 10 C 0.182 3.818 11 C -0.133 4.133 12 C 0.138 3.862 13 H 0.111 0.889 14 N -0.693 5.693 15 C 0.600 3.400 16 O -0.557 6.557 17 C -0.099 4.099 18 O -0.169 6.169 19 C 0.018 3.982 20 C -0.230 4.230 21 C -0.120 4.120 22 C -0.060 4.060 23 C -0.112 4.112 24 C -0.041 4.041 25 C 0.122 3.878 26 H 0.248 0.752 27 H 0.019 0.981 28 H 0.011 0.989 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.408 0.592 32 H 0.251 0.749 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -12.967 -17.072 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.349 5.349 10 C 0.057 3.943 11 C -0.171 4.171 12 C 0.033 3.967 13 H 0.128 0.872 14 N -0.341 5.341 15 C 0.388 3.612 16 O -0.438 6.438 17 C -0.150 4.150 18 O -0.065 6.065 19 C -0.050 4.050 20 C -0.231 4.231 21 C -0.123 4.123 22 C -0.097 4.097 23 C -0.149 4.149 24 C -0.078 4.078 25 C -0.004 4.004 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.029 0.971 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.243 0.757 32 H 0.267 0.733 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.229 -13.192 -16.507 21.248 hybrid contribution 0.083 1.661 0.325 1.695 sum 2.313 -11.531 -16.182 20.004 Atomic orbital electron populations 1.70157 1.06013 1.25319 1.57766 1.25549 0.96591 1.00563 1.02345 0.85139 0.77817 0.79563 0.77294 1.21434 1.21749 1.19745 1.19361 0.91373 0.84043 1.42691 0.90893 1.44717 1.02509 1.01604 1.86039 1.20970 0.83485 0.91592 0.98203 1.23091 0.95964 0.96085 1.01985 1.22105 0.96400 0.99623 0.78571 0.87164 1.45767 1.46981 1.33508 1.07831 1.16770 0.79317 0.81704 0.83370 1.90796 1.45379 1.33594 1.74066 1.21019 1.05291 0.96554 0.92140 1.84206 1.56185 1.46005 1.20144 1.24308 0.98544 0.99547 0.82649 1.21821 1.03965 0.99661 0.97666 1.21712 0.98427 0.99109 0.93075 1.20715 0.95716 0.94003 0.99273 1.22422 0.97871 1.02007 0.92603 1.20542 0.95521 0.97338 0.94417 1.22074 0.95148 0.86058 0.97107 0.94252 0.96263 0.97092 0.89004 0.88462 0.75708 0.73273 0.91575 0.89219 0.90727 0.87589 0.88896 0.88620 0.94353 0.95530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.22 10.36 21.65 0.22 -56.00 16 2 C -0.06 -3.26 5.48 84.86 0.46 -2.80 16 3 Si 0.97 46.35 29.56 68.60 2.03 48.38 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.25 -14.15 10.27 84.03 0.86 -13.28 16 8 H 0.07 4.13 7.84 -2.91 -0.02 4.11 16 9 N -0.62 -32.44 3.39 -691.99 -2.35 -34.79 16 10 C 0.18 8.78 5.37 86.73 0.47 9.24 16 11 C -0.13 -4.64 6.55 31.78 0.21 -4.44 16 12 C 0.14 5.03 3.43 46.38 0.16 5.19 16 13 H 0.11 3.71 7.54 -2.38 -0.02 3.69 16 14 N -0.69 -25.07 5.18 -439.92 -2.28 -27.35 16 15 C 0.60 22.16 7.79 86.44 0.67 22.84 16 16 O -0.56 -22.69 16.51 -4.36 -0.07 -22.77 16 17 C -0.10 -3.24 7.13 24.06 0.17 -3.07 16 18 O -0.17 -4.93 10.40 -5.48 -0.06 -4.99 16 19 C 0.02 0.38 12.08 67.11 0.81 1.19 16 20 C -0.23 -4.94 6.93 -19.94 -0.14 -5.07 16 21 C -0.12 -3.36 6.66 -19.66 -0.13 -3.49 16 22 C -0.06 -1.34 6.76 30.44 0.21 -1.14 16 23 C -0.11 -1.60 7.05 31.52 0.22 -1.38 16 24 C -0.04 -0.57 6.76 30.45 0.21 -0.36 16 25 C 0.12 5.38 6.93 86.85 0.60 5.98 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.02 1.02 7.30 -2.39 -0.02 1.00 16 28 H 0.01 0.59 7.61 -2.39 -0.02 0.57 16 29 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.41 14.72 8.42 -92.71 -0.78 13.94 16 32 H 0.25 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -72.78 332.39 2.55 -70.23 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.27 Total: 17.87 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.78 Total: 9.41 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -4.41 Total: -118.14 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.13 Total: -27.75 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -72.78 2.55 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015403185.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.511 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds