Wall clock time and date at job start Tue Mar 31 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21697 * 120.00244 * 359.97438 * 13 12 11 15 15 C 1.46655 * 120.00065 * 179.97438 * 13 12 11 16 16 C 1.36777 * 125.95793 * 179.97438 * 15 13 12 17 17 C 1.39651 * 106.53162 * 180.02562 * 16 15 13 18 18 C 1.35571 * 107.41820 * 0.04600 * 17 16 15 19 19 O 1.33503 * 108.60779 * 359.65459 * 18 17 16 20 20 C 1.51002 * 123.79761 * 179.90360 * 18 17 16 21 21 C 1.53333 * 108.41451 * 343.27385 * 20 18 17 22 22 C 1.53111 * 109.55366 * 50.16988 * 21 20 18 23 23 C 1.50703 * 128.12419 * 180.14342 * 17 16 15 24 24 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 25 25 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 27 27 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 28 28 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 29 29 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 30 30 H 1.07993 * 126.73177 * 0.04841 * 16 15 13 31 31 H 1.09002 * 109.67257 * 102.99944 * 20 18 17 32 32 H 1.08992 * 109.67842 * 223.50662 * 20 18 17 33 33 H 1.08991 * 109.45823 * 170.19760 * 21 20 18 34 34 H 1.09000 * 109.45321 * 290.14999 * 21 20 18 35 35 H 1.09002 * 109.47535 * 49.75503 * 22 21 20 36 36 H 1.08997 * 109.47777 * 169.77908 * 22 21 20 37 37 H 1.08999 * 109.67880 * 283.25036 * 23 17 16 38 38 H 1.08996 * 109.68063 * 43.80074 * 23 17 16 39 39 H 1.08999 * 113.77157 * 90.38334 * 24 9 7 40 40 H 1.09002 * 113.84143 * 318.91597 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4634 -5.3206 2.2085 15 6 -0.5742 -4.6864 4.2636 16 6 -1.4761 -5.3024 5.0871 17 6 -1.0800 -5.0158 6.3952 18 6 0.0330 -4.2453 6.3227 19 8 0.3370 -4.0559 5.0366 20 6 0.7712 -3.7200 7.5307 21 6 -0.1511 -3.8360 8.7502 22 6 -0.7269 -5.2527 8.8243 23 6 -1.7297 -5.4565 7.6817 24 6 -0.1058 -2.7570 0.0001 25 1 -0.4850 0.8401 -0.0004 26 1 2.5619 -4.0327 0.6538 27 1 1.8325 -4.2346 -0.9996 28 1 -0.1594 -4.9598 0.2327 29 1 1.0580 -3.5720 2.5714 30 1 -2.3272 -5.8944 4.7848 31 1 1.6728 -4.3102 7.6951 32 1 1.0401 -2.6759 7.3712 33 1 0.4172 -3.6271 9.6564 34 1 -0.9656 -3.1174 8.6589 35 1 0.0811 -5.9786 8.7327 36 1 -1.2323 -5.3900 9.7802 37 1 -2.6226 -4.8589 7.8654 38 1 -2.0001 -6.5102 7.6142 39 1 -0.5312 -2.8713 -0.9969 40 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030423987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:30 Heat of formation + Delta-G solvation = 2.208855 kcal Electronic energy + Delta-G solvation = -22764.602211 eV Core-core repulsion = 19353.427601 eV Total energy + Delta-G solvation = -3411.174610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.88816 -40.96418 -39.17086 -38.05377 -35.07613 -34.08006 -33.76851 -31.14169 -30.48696 -29.35390 -26.63847 -25.94338 -24.62407 -23.67808 -22.84692 -21.84878 -21.01835 -20.09565 -18.85770 -18.75617 -17.62639 -17.27345 -17.00983 -16.77056 -15.91573 -15.75413 -15.51332 -15.31864 -14.73782 -14.66262 -14.48685 -14.44211 -14.01493 -13.74883 -13.49360 -13.41952 -13.22277 -13.06911 -12.81015 -12.42948 -12.17783 -11.76967 -11.75993 -11.72981 -11.51390 -11.44963 -11.42774 -10.92329 -10.72981 -10.13690 -9.35057 -8.96655 -7.90759 -5.25767 -0.04023 1.26829 1.44477 1.46590 1.53254 1.55122 2.03657 2.14638 2.45824 3.23903 3.38100 3.48096 3.72057 3.77909 3.81095 4.00628 4.13008 4.17918 4.37969 4.41987 4.48368 4.53113 4.60471 4.70566 4.75422 4.83009 4.89646 4.93661 5.02182 5.03428 5.10065 5.19855 5.21957 5.23701 5.45205 5.45896 5.53873 5.60157 5.87128 5.90597 6.44085 6.88292 6.97286 7.59263 8.52556 9.25603 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018015 B = 0.003950 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.891082 B = 7086.920628 C = 8117.330224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.233 4.233 8 H 0.089 0.911 9 N -0.636 5.636 10 C 0.121 3.879 11 C 0.109 3.891 12 N -0.680 5.680 13 C 0.602 3.398 14 O -0.560 6.560 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.199 4.199 18 C 0.015 3.985 19 O -0.169 6.169 20 C -0.044 4.044 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.050 4.050 24 C 0.146 3.854 25 H 0.246 0.754 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.409 0.591 30 H 0.165 0.835 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.030 0.970 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 -11.759 19.998 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.364 5.364 10 C -0.004 4.004 11 C 0.003 3.997 12 N -0.328 5.328 13 C 0.390 3.610 14 O -0.442 6.442 15 C -0.160 4.160 16 C -0.131 4.131 17 C -0.200 4.200 18 C -0.038 4.038 19 O -0.065 6.065 20 C -0.081 4.081 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.087 4.087 24 C 0.020 3.980 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.245 0.755 30 H 0.183 0.817 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.556 -11.692 19.442 22.693 hybrid contribution 0.248 1.400 -0.747 1.605 sum 0.804 -10.292 18.695 21.356 Atomic orbital electron populations 1.70041 1.06641 1.25483 1.58225 1.25640 0.96426 1.00974 1.02996 0.85076 0.77769 0.79063 0.77405 1.21466 1.22433 1.18873 1.19450 0.90928 0.83137 1.42584 0.89327 1.46427 1.02849 1.00654 1.86439 1.23071 0.94812 0.83741 0.98810 1.22668 0.99095 0.98473 0.79471 1.45428 1.29296 1.51175 1.06879 1.16754 0.81518 0.78842 0.83882 1.90804 1.37817 1.46380 1.69199 1.21883 0.95993 1.07143 0.90993 1.21833 0.99461 0.99731 0.92059 1.20551 0.98908 1.04411 0.96157 1.23663 0.97765 0.99312 0.83072 1.83914 1.45847 1.59231 1.17526 1.20636 0.98528 1.02407 0.86513 1.21644 0.99074 0.97849 0.96507 1.21664 0.98758 0.96832 0.98400 1.20239 0.98151 1.01915 0.88401 1.22658 0.87696 0.91152 0.96538 0.94472 0.91388 0.90999 0.87472 0.75515 0.81744 0.87394 0.88947 0.87733 0.91579 0.91243 0.88834 0.90037 0.89658 0.95213 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.05 11.39 21.65 0.25 -58.80 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 8 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 9 N -0.64 -32.42 3.70 -716.70 -2.65 -35.07 16 10 C 0.12 4.70 8.68 86.49 0.75 5.45 16 11 C 0.11 4.36 4.40 46.74 0.21 4.57 16 12 N -0.68 -26.29 5.37 -451.40 -2.42 -28.71 16 13 C 0.60 23.35 7.79 86.44 0.67 24.03 16 14 O -0.56 -24.12 16.49 -4.34 -0.07 -24.19 16 15 C -0.11 -3.70 7.14 24.13 0.17 -3.52 16 16 C -0.11 -3.20 10.60 22.27 0.24 -2.96 16 17 C -0.20 -4.69 5.93 -20.14 -0.12 -4.81 16 18 C 0.01 0.36 7.22 25.16 0.18 0.54 16 19 O -0.17 -5.33 10.39 -3.10 -0.03 -5.36 16 20 C -0.04 -0.68 6.30 30.06 0.19 -0.49 16 21 C -0.11 -1.20 5.89 30.74 0.18 -1.02 16 22 C -0.12 -1.22 5.91 30.76 0.18 -1.04 16 23 C -0.05 -0.76 6.28 29.98 0.19 -0.57 16 24 C 0.15 7.32 7.32 86.44 0.63 7.95 16 25 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.11 4.01 7.51 -2.39 -0.02 3.99 16 29 H 0.41 15.56 8.49 -92.70 -0.79 14.78 16 30 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 35 H 0.07 0.71 8.11 -2.39 -0.02 0.69 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 2.21 7.16 -2.39 -0.02 2.20 16 Total: -1.00 -72.65 334.74 2.20 -70.45 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.27 Total: 21.01 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 4.84 Total: 12.66 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -4.83 Total: -122.58 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.10 Total: -29.55 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -72.65 2.20 -70.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030423987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.657 kcal (2) G-P(sol) polarization free energy of solvation -72.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds