Wall clock time and date at job start Tue Mar 31 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48509 * 109.46877 * 239.99482 * 3 2 1 5 5 H 1.48497 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47183 * 120.00003 * 3 2 1 7 7 C 1.38817 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49180 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11982 * 155.35595 * 10 9 7 12 12 N 1.46499 * 113.74283 * 137.95241 * 11 10 9 13 13 C 1.34777 * 119.99665 * 157.20690 * 12 11 10 14 14 O 1.21693 * 120.00200 * 359.72115 * 13 12 11 15 15 C 1.46658 * 119.99639 * 179.72443 * 13 12 11 16 16 O 1.35279 * 126.10008 * 359.68922 * 15 13 12 17 17 C 1.34304 * 109.45772 * 179.78572 * 16 15 13 18 18 C 1.34220 * 108.57295 * 0.39549 * 17 16 15 19 19 C 1.35561 * 126.09928 * 179.97438 * 15 13 12 20 20 C 1.50647 * 129.36889 * 0.28774 * 19 15 13 21 21 C 1.53448 * 108.11439 * 163.40363 * 20 19 15 22 22 C 1.53019 * 109.79991 * 50.43474 * 21 20 19 23 23 C 1.50724 * 129.23547 * 180.02562 * 18 17 16 24 24 C 1.47814 * 134.45715 * 359.86085 * 9 7 2 25 25 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 26 26 H 1.09005 * 113.76936 * 41.05826 * 10 9 7 27 27 H 1.08997 * 113.77659 * 269.65640 * 10 9 7 28 28 H 1.09000 * 113.74304 * 269.16191 * 11 10 9 29 29 H 0.97001 * 119.99790 * 336.92403 * 12 11 10 30 30 H 1.07997 * 125.71027 * 180.09077 * 17 16 15 31 31 H 1.09005 * 109.73155 * 283.06402 * 20 19 15 32 32 H 1.09002 * 109.73390 * 43.74918 * 20 19 15 33 33 H 1.09002 * 109.42165 * 290.32658 * 21 20 19 34 34 H 1.09008 * 109.35873 * 170.49884 * 21 20 19 35 35 H 1.08999 * 109.40814 * 168.17845 * 22 21 20 36 36 H 1.08995 * 109.35199 * 48.35645 * 22 21 20 37 37 H 1.08994 * 109.73331 * 282.95632 * 23 18 17 38 38 H 1.09003 * 109.73085 * 43.64429 * 23 18 17 39 39 H 1.09000 * 113.76874 * 90.37935 * 24 9 7 40 40 H 1.09000 * 113.83941 * 318.92025 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0830 0.6410 12 7 -0.3333 -5.2614 0.0982 13 6 -1.2772 -5.8897 0.8267 14 8 -1.5607 -5.4812 1.9374 15 6 -1.9626 -7.0658 0.2809 16 8 -1.7502 -7.6190 -0.9352 17 6 -2.5540 -8.6840 -1.0888 18 6 -3.2969 -8.8223 0.0205 19 6 -2.9257 -7.7891 0.9028 20 6 -3.5385 -7.5929 2.2649 21 6 -4.8428 -8.3993 2.3220 22 6 -4.5853 -9.8348 1.8589 23 6 -4.3442 -9.8570 0.3436 24 6 -0.1058 -2.7570 0.0026 25 1 -0.4850 0.8401 -0.0004 26 1 2.5624 -4.0323 0.6558 27 1 1.8319 -4.2351 -0.9969 28 1 0.3595 -4.0638 1.7308 29 1 -0.1074 -5.5869 -0.7872 30 1 -2.5989 -9.3193 -1.9609 31 1 -2.8514 -7.9494 3.0324 32 1 -3.7521 -6.5358 2.4236 33 1 -5.5842 -7.9359 1.6709 34 1 -5.2163 -8.4103 3.3460 35 1 -5.4510 -10.4529 2.0970 36 1 -3.7075 -10.2278 2.3717 37 1 -5.2699 -9.6199 -0.1807 38 1 -3.9921 -10.8436 0.0421 39 1 -0.5312 -2.8721 -0.9943 40 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031306376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:56 Heat of formation + Delta-G solvation = 22.157801 kcal Electronic energy + Delta-G solvation = -22665.294449 eV Core-core repulsion = 19254.984891 eV Total energy + Delta-G solvation = -3410.309559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.83864 -39.36688 -37.59417 -37.35925 -33.57003 -32.04379 -31.82722 -31.73554 -28.72587 -27.29373 -24.84210 -24.62821 -23.84740 -22.18620 -22.13877 -19.96958 -19.50652 -19.19881 -17.58057 -16.79523 -16.44702 -16.07921 -15.71761 -14.94076 -14.84450 -14.57440 -14.26318 -14.03294 -13.92604 -13.80577 -13.09029 -12.90652 -12.68609 -12.43682 -12.13910 -11.89790 -11.47744 -11.45477 -11.04996 -10.97682 -10.88786 -10.78510 -10.77795 -10.47620 -10.10101 -9.81024 -9.54369 -9.44146 -8.81288 -8.74069 -8.39338 -6.93094 -5.77538 -3.11804 1.12064 2.23639 2.72390 3.36565 3.39606 3.42781 3.45623 3.50957 4.32197 4.44817 4.59008 4.64933 4.71823 5.02981 5.08805 5.11009 5.24404 5.27884 5.39739 5.46218 5.47409 5.55091 5.68751 5.75941 5.82135 5.90323 5.96958 6.00831 6.13853 6.17046 6.19126 6.35816 6.39813 6.53121 6.68756 6.83321 7.22469 7.34207 7.54460 7.81342 7.95565 8.38454 9.02122 9.68579 10.54757 11.39117 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037342 B = 0.003057 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.642431 B = 9156.861306 C = 9503.424890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.090 3.910 12 N -0.703 5.703 13 C 0.598 3.402 14 O -0.520 6.520 15 C -0.066 4.066 16 O -0.167 6.167 17 C -0.009 4.009 18 C -0.192 4.192 19 C -0.090 4.090 20 C -0.055 4.055 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.048 4.048 24 C 0.154 3.846 25 H 0.255 0.745 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.114 0.886 29 H 0.401 0.599 30 H 0.206 0.794 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 -21.996 -0.374 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.354 4.354 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.353 5.353 13 C 0.383 3.617 14 O -0.398 6.398 15 C -0.117 4.117 16 O -0.064 6.064 17 C -0.078 4.078 18 C -0.194 4.194 19 C -0.093 4.093 20 C -0.092 4.092 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.085 4.085 24 C 0.028 3.972 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.131 0.869 29 H 0.235 0.765 30 H 0.223 0.777 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.684 -21.172 0.236 22.885 hybrid contribution 0.492 0.622 -0.783 1.115 sum -8.192 -20.550 -0.547 22.130 Atomic orbital electron populations 1.69817 1.05058 1.25640 1.55960 1.24825 0.95701 0.97659 1.02095 0.86161 0.78451 0.82937 0.77949 1.21144 1.21504 1.20959 1.18937 0.90233 0.81587 1.44691 0.90055 1.45704 1.02370 0.99148 1.86092 1.22866 0.94488 0.86856 0.97143 1.24027 0.93509 0.83842 1.00059 1.46088 1.38659 1.30627 1.19881 1.16582 0.79698 0.80492 0.84915 1.90862 1.64685 1.65235 1.19038 1.21790 1.04096 1.00131 0.85728 1.84252 1.52781 1.36612 1.32708 1.23730 0.93283 0.90358 1.00392 1.20301 1.03159 1.00716 0.95195 1.20369 0.96123 0.94647 0.98133 1.20222 0.95726 1.01812 0.91421 1.21624 0.97382 0.95165 1.01505 1.21581 1.01784 0.97126 0.95104 1.20079 0.95901 0.95884 0.96663 1.22727 0.88205 0.88953 0.97304 0.93449 0.93078 0.94616 0.86857 0.76454 0.77729 0.90162 0.89247 0.91742 0.91348 0.91555 0.91693 0.90723 0.90837 0.95273 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.68 11.39 55.49 0.63 -27.05 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.92 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.76 3.70 -177.84 -0.66 -16.42 16 10 C 0.11 2.30 8.69 -2.97 -0.03 2.28 16 11 C 0.09 1.80 4.40 -70.12 -0.31 1.49 16 12 N -0.70 -11.75 5.37 -56.64 -0.30 -12.05 16 13 C 0.60 10.34 7.79 -12.86 -0.10 10.24 16 14 O -0.52 -10.41 15.08 5.20 0.08 -10.33 16 15 C -0.07 -0.97 7.12 -37.14 -0.26 -1.24 16 16 O -0.17 -2.14 10.43 2.94 0.03 -2.11 16 17 C -0.01 -0.08 12.05 29.32 0.35 0.27 16 18 C -0.19 -2.05 5.92 -105.04 -0.62 -2.67 16 19 C -0.09 -1.20 5.94 -104.62 -0.62 -1.82 16 20 C -0.05 -0.67 5.40 -27.68 -0.15 -0.82 16 21 C -0.12 -1.09 5.86 -26.49 -0.16 -1.25 16 22 C -0.12 -0.92 5.86 -26.49 -0.16 -1.07 16 23 C -0.05 -0.37 6.30 -27.64 -0.17 -0.55 16 24 C 0.15 3.76 7.33 -2.83 -0.02 3.74 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 28 H 0.11 2.40 7.51 -51.93 -0.39 2.01 16 29 H 0.40 5.79 8.48 -40.82 -0.35 5.44 16 30 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.24 7.49 -51.93 -0.39 0.85 16 33 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 2.16 7.16 -51.93 -0.37 1.79 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -33.12 331.85 -8.43 -41.55 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.69 Total: 2.39 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.50 Total: 1.74 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.33 Total: -55.52 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.11 Total: -12.44 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.12 -8.43 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031306376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.710 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds