Wall clock time and date at job start Tue Mar 31 2020 06:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48509 * 109.46877 * 239.99482 * 3 2 1 5 5 H 1.48497 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47183 * 120.00003 * 3 2 1 7 7 C 1.38817 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49180 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11982 * 155.35595 * 10 9 7 12 12 N 1.46499 * 113.74283 * 137.95241 * 11 10 9 13 13 C 1.34777 * 119.99665 * 157.20690 * 12 11 10 14 14 O 1.21693 * 120.00200 * 359.72115 * 13 12 11 15 15 C 1.46658 * 119.99639 * 179.72443 * 13 12 11 16 16 O 1.35279 * 126.10008 * 359.68922 * 15 13 12 17 17 C 1.34304 * 109.45772 * 179.78572 * 16 15 13 18 18 C 1.34220 * 108.57295 * 0.39549 * 17 16 15 19 19 C 1.35561 * 126.09928 * 179.97438 * 15 13 12 20 20 C 1.50647 * 129.36889 * 0.28774 * 19 15 13 21 21 C 1.53448 * 108.11439 * 163.40363 * 20 19 15 22 22 C 1.53019 * 109.79991 * 50.43474 * 21 20 19 23 23 C 1.50724 * 129.23547 * 180.02562 * 18 17 16 24 24 C 1.47814 * 134.45715 * 359.86085 * 9 7 2 25 25 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 26 26 H 1.09005 * 113.76936 * 41.05826 * 10 9 7 27 27 H 1.08997 * 113.77659 * 269.65640 * 10 9 7 28 28 H 1.09000 * 113.74304 * 269.16191 * 11 10 9 29 29 H 0.97001 * 119.99790 * 336.92403 * 12 11 10 30 30 H 1.07997 * 125.71027 * 180.09077 * 17 16 15 31 31 H 1.09005 * 109.73155 * 283.06402 * 20 19 15 32 32 H 1.09002 * 109.73390 * 43.74918 * 20 19 15 33 33 H 1.09002 * 109.42165 * 290.32658 * 21 20 19 34 34 H 1.09008 * 109.35873 * 170.49884 * 21 20 19 35 35 H 1.08999 * 109.40814 * 168.17845 * 22 21 20 36 36 H 1.08995 * 109.35199 * 48.35645 * 22 21 20 37 37 H 1.08994 * 109.73331 * 282.95632 * 23 18 17 38 38 H 1.09003 * 109.73085 * 43.64429 * 23 18 17 39 39 H 1.09000 * 113.76874 * 90.37935 * 24 9 7 40 40 H 1.09000 * 113.83941 * 318.92025 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0830 0.6410 12 7 -0.3333 -5.2614 0.0982 13 6 -1.2772 -5.8897 0.8267 14 8 -1.5607 -5.4812 1.9374 15 6 -1.9626 -7.0658 0.2809 16 8 -1.7502 -7.6190 -0.9352 17 6 -2.5540 -8.6840 -1.0888 18 6 -3.2969 -8.8223 0.0205 19 6 -2.9257 -7.7891 0.9028 20 6 -3.5385 -7.5929 2.2649 21 6 -4.8428 -8.3993 2.3220 22 6 -4.5853 -9.8348 1.8589 23 6 -4.3442 -9.8570 0.3436 24 6 -0.1058 -2.7570 0.0026 25 1 -0.4850 0.8401 -0.0004 26 1 2.5624 -4.0323 0.6558 27 1 1.8319 -4.2351 -0.9969 28 1 0.3595 -4.0638 1.7308 29 1 -0.1074 -5.5869 -0.7872 30 1 -2.5989 -9.3193 -1.9609 31 1 -2.8514 -7.9494 3.0324 32 1 -3.7521 -6.5358 2.4236 33 1 -5.5842 -7.9359 1.6709 34 1 -5.2163 -8.4103 3.3460 35 1 -5.4510 -10.4529 2.0970 36 1 -3.7075 -10.2278 2.3717 37 1 -5.2699 -9.6199 -0.1807 38 1 -3.9921 -10.8436 0.0421 39 1 -0.5312 -2.8721 -0.9943 40 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031306376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:55 Heat of formation + Delta-G solvation = 0.054866 kcal Electronic energy + Delta-G solvation = -22666.252904 eV Core-core repulsion = 19254.984891 eV Total energy + Delta-G solvation = -3411.268014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.77459 -40.89078 -39.20157 -38.23702 -35.23034 -33.82359 -32.79238 -32.67482 -30.00087 -28.95512 -26.67253 -25.69490 -25.17139 -23.62555 -22.98559 -21.46845 -20.96140 -20.04374 -18.81292 -18.69815 -17.47085 -17.43546 -17.01032 -16.83143 -15.80811 -15.74083 -15.50968 -15.44709 -15.25088 -14.73907 -14.58320 -14.04107 -13.72007 -13.61882 -13.36673 -13.26403 -13.18863 -12.95116 -12.81883 -12.65732 -12.36465 -12.00648 -11.79585 -11.71170 -11.56684 -11.51969 -11.14643 -10.90137 -10.36770 -10.11859 -9.51559 -9.00979 -7.93574 -5.29782 0.04962 1.37282 1.44711 1.49254 1.55417 1.68266 2.07898 2.19243 2.49184 3.22068 3.36518 3.51068 3.72513 3.78134 3.85271 4.02792 4.16855 4.25911 4.33147 4.41836 4.46557 4.54206 4.64984 4.70330 4.74800 4.85816 4.95365 5.00795 5.04812 5.07431 5.16968 5.18952 5.25531 5.32265 5.44199 5.45752 5.52272 5.60518 5.85368 5.90352 6.47561 6.85321 7.03612 7.55702 8.48023 9.23081 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037342 B = 0.003057 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.642431 B = 9156.861306 C = 9503.424890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 0.986 3.014 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.637 5.637 10 C 0.123 3.877 11 C 0.119 3.881 12 N -0.694 5.694 13 C 0.597 3.403 14 O -0.558 6.558 15 C -0.104 4.104 16 O -0.174 6.174 17 C 0.013 3.987 18 C -0.205 4.205 19 C -0.091 4.091 20 C -0.060 4.060 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.046 4.046 24 C 0.152 3.848 25 H 0.249 0.751 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.415 0.585 30 H 0.255 0.745 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.024 0.976 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 -24.794 -1.653 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.366 4.366 8 H 0.110 0.890 9 N -0.364 5.364 10 C -0.002 4.002 11 C 0.013 3.987 12 N -0.344 5.344 13 C 0.385 3.615 14 O -0.439 6.439 15 C -0.155 4.155 16 O -0.071 6.071 17 C -0.055 4.055 18 C -0.206 4.206 19 C -0.094 4.094 20 C -0.097 4.097 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.082 4.082 24 C 0.026 3.974 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.252 0.748 30 H 0.271 0.729 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.512 -24.028 -1.065 25.513 hybrid contribution 0.388 1.347 -0.407 1.460 sum -8.123 -22.681 -1.472 24.137 Atomic orbital electron populations 1.70037 1.06726 1.25868 1.57751 1.25757 0.96583 1.01326 1.02567 0.85053 0.77045 0.78161 0.78454 1.19917 1.22183 1.19978 1.19416 0.91035 0.82798 1.43377 0.89024 1.46028 1.03167 1.00830 1.86396 1.23001 0.94820 0.83621 0.98743 1.23322 0.93311 0.83157 0.98909 1.45811 1.38579 1.29545 1.20482 1.16892 0.79177 0.80976 0.84435 1.90834 1.65759 1.66605 1.20698 1.21227 1.05958 1.00798 0.87493 1.84233 1.53633 1.37604 1.31616 1.24755 0.90806 0.88692 1.01247 1.20705 1.04292 1.00828 0.94769 1.20748 0.95132 0.94929 0.98587 1.20250 0.97423 1.00800 0.91196 1.21621 0.95348 0.95911 1.02398 1.21600 1.02625 0.95927 0.95327 1.20207 0.95476 0.96052 0.96512 1.22594 0.87506 0.90884 0.96453 0.94217 0.91276 0.91766 0.88313 0.74836 0.72941 0.90671 0.91974 0.91842 0.90270 0.89165 0.92194 0.89479 0.88359 0.95833 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.79 11.39 21.65 0.25 -59.54 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.99 46.47 29.55 68.60 2.03 48.50 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.59 10.70 84.04 0.90 -12.70 16 8 H 0.09 4.89 7.83 -2.91 -0.02 4.86 16 9 N -0.64 -33.54 3.70 -716.56 -2.65 -36.20 16 10 C 0.12 4.90 8.69 86.49 0.75 5.65 16 11 C 0.12 4.84 4.40 46.75 0.21 5.04 16 12 N -0.69 -23.40 5.37 -451.32 -2.42 -25.83 16 13 C 0.60 21.34 7.79 86.44 0.67 22.01 16 14 O -0.56 -23.65 15.08 -4.33 -0.07 -23.72 16 15 C -0.10 -3.06 7.12 23.85 0.17 -2.89 16 16 O -0.17 -4.14 10.43 -12.41 -0.13 -4.27 16 17 C 0.01 0.22 12.05 66.90 0.81 1.02 16 18 C -0.20 -3.80 5.92 -20.14 -0.12 -3.92 16 19 C -0.09 -2.38 5.94 -19.86 -0.12 -2.50 16 20 C -0.06 -1.50 5.40 29.98 0.16 -1.33 16 21 C -0.12 -1.98 5.86 30.75 0.18 -1.80 16 22 C -0.12 -1.48 5.86 30.75 0.18 -1.30 16 23 C -0.05 -0.53 6.30 30.01 0.19 -0.34 16 24 C 0.15 7.74 7.33 86.45 0.63 8.38 16 25 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 27 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 28 H 0.10 4.35 7.51 -2.39 -0.02 4.34 16 29 H 0.41 11.66 8.48 -92.71 -0.79 10.88 16 30 H 0.25 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.06 1.87 7.49 -2.39 -0.02 1.85 16 33 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.02 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.04 2.13 7.16 -2.39 -0.02 2.12 16 Total: -1.00 -75.46 331.85 2.35 -73.10 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.27 Total: 16.21 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.08 Total: 11.73 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -4.83 Total: -121.56 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.19 Total: -27.99 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -75.46 2.35 -73.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031306376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.157 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds