Wall clock time and date at job start Tue Mar 31 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 C 1.53001 * 114.57173 * 272.66123 * 11 10 9 13 13 N 1.46501 * 109.47379 * 268.67262 * 12 11 10 14 14 C 1.34778 * 120.00016 * 179.97438 * 13 12 11 15 15 O 1.21700 * 119.99901 * 359.97438 * 14 13 12 16 16 C 1.46654 * 120.00082 * 179.97438 * 14 13 12 17 17 O 1.34943 * 126.00570 * 359.69732 * 16 14 13 18 18 C 1.33943 * 109.38083 * 179.86116 * 17 16 14 19 19 C 1.35150 * 108.75109 * 0.39806 * 18 17 16 20 20 C 1.36468 * 126.00985 * 179.97438 * 16 14 13 21 21 C 1.51080 * 143.66980 * 359.97438 * 20 16 14 22 22 C 1.54377 * 105.24362 * 197.16295 * 21 20 16 23 23 C 1.51144 * 143.44465 * 179.75269 * 19 18 17 24 24 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 25 25 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 26 26 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 27 27 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 28 28 H 1.08998 * 114.08759 * 139.78710 * 11 10 9 29 29 H 1.09001 * 109.47442 * 28.67369 * 12 11 10 30 30 H 1.08998 * 109.47413 * 148.67312 * 12 11 10 31 31 H 0.96994 * 119.99644 * 0.02562 * 13 12 11 32 32 H 1.08001 * 125.63051 * 180.12103 * 18 17 16 33 33 H 1.09003 * 110.29051 * 316.10760 * 21 20 16 34 34 H 1.09000 * 110.28530 * 78.12313 * 21 20 16 35 35 H 1.08998 * 110.75986 * 91.85749 * 22 21 20 36 36 H 1.08997 * 110.75871 * 215.05620 * 22 21 20 37 37 H 1.09001 * 110.28413 * 43.89001 * 23 19 18 38 38 H 1.09000 * 110.28846 * 281.78194 * 23 19 18 39 39 H 1.08996 * 113.46819 * 321.85844 * 24 9 7 40 40 H 1.09007 * 113.47055 * 92.24673 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 6 0.8454 -3.9928 -2.4929 13 7 -0.3161 -4.3838 -3.2956 14 6 -0.2378 -4.3789 -4.6411 15 8 0.7975 -4.0493 -5.1892 16 6 -1.4003 -4.7709 -5.4447 17 8 -2.6002 -5.1614 -4.9662 18 6 -3.4180 -5.4388 -5.9900 19 6 -2.7492 -5.2380 -7.1471 20 6 -1.4572 -4.8099 -6.8076 21 6 -0.6582 -4.5672 -8.0666 22 6 -1.7039 -4.4639 -9.1975 23 6 -2.8789 -5.3036 -8.6516 24 6 1.6717 -3.8136 -0.0623 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6458 -2.9419 0.5050 27 1 -0.5617 -2.1435 -1.1235 28 1 -0.0867 -4.9727 -0.7557 29 1 1.1275 -2.9686 -2.7370 30 1 1.6787 -4.6608 -2.7103 31 1 -1.1416 -4.6454 -2.8587 32 1 -4.4416 -5.7727 -5.9050 33 1 -0.0969 -3.6364 -7.9846 34 1 0.0191 -5.4012 -8.2510 35 1 -2.0068 -3.4281 -9.3502 36 1 -1.3167 -4.8920 -10.1221 37 1 -3.8291 -4.8733 -8.9681 38 1 -2.7979 -6.3355 -8.9933 39 1 2.6415 -4.0509 -0.4996 40 1 1.5408 -4.2432 0.9310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031878513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:59 Heat of formation + Delta-G solvation = 39.798065 kcal Electronic energy + Delta-G solvation = -22529.915265 eV Core-core repulsion = 19120.370645 eV Total energy + Delta-G solvation = -3409.544619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.95843 -39.35860 -38.10315 -37.46255 -34.29842 -32.18045 -30.81673 -30.63854 -28.72941 -27.34302 -25.85880 -24.59866 -23.35388 -22.41508 -21.61241 -20.37158 -19.85340 -18.68098 -17.42837 -16.72870 -16.62431 -15.97972 -15.82287 -15.27839 -15.04550 -14.62881 -14.29400 -14.17955 -13.77402 -13.42961 -13.20422 -12.88271 -12.61547 -12.45029 -11.92689 -11.79833 -11.53392 -11.40301 -11.36407 -11.14505 -10.98909 -10.74103 -10.52022 -10.13303 -9.85199 -9.81925 -9.41469 -9.24683 -8.88639 -8.76659 -8.54048 -6.87186 -5.76790 -3.07482 1.04586 2.17431 2.64525 3.29629 3.41262 3.43137 3.46781 3.49067 3.86510 4.48522 4.54404 4.65754 4.79951 4.92600 4.99763 5.25655 5.30195 5.32698 5.40808 5.45891 5.52837 5.60214 5.65939 5.75416 5.90241 5.96227 6.00979 6.02020 6.11871 6.23407 6.35960 6.51367 6.56161 6.61123 6.71446 6.83358 7.18133 7.26025 7.53962 7.69599 7.98291 8.28708 9.05173 9.71999 10.65849 11.41927 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.003385 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.857525 B = 8270.387473 C = 8727.825339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.166 3.834 11 C -0.163 4.163 12 C 0.150 3.850 13 N -0.710 5.710 14 C 0.598 3.402 15 O -0.521 6.521 16 C -0.055 4.055 17 O -0.155 6.155 18 C 0.006 3.994 19 C -0.220 4.220 20 C -0.111 4.111 21 C -0.055 4.055 22 C -0.119 4.119 23 C -0.045 4.045 24 C 0.127 3.873 25 H 0.253 0.747 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.403 0.597 32 H 0.209 0.791 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -14.053 -15.197 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.040 3.960 11 C -0.183 4.183 12 C 0.028 3.972 13 N -0.360 5.360 14 C 0.383 3.617 15 O -0.399 6.399 16 C -0.107 4.107 17 O -0.051 6.051 18 C -0.063 4.063 19 C -0.221 4.221 20 C -0.114 4.114 21 C -0.092 4.092 22 C -0.157 4.157 23 C -0.082 4.082 24 C 0.000 4.000 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.238 0.762 32 H 0.226 0.774 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.423 -13.440 -15.230 21.626 hybrid contribution -0.233 0.769 0.468 0.930 sum -7.656 -12.671 -14.762 20.906 Atomic orbital electron populations 1.69842 1.05053 1.25371 1.56349 1.24815 0.95656 0.97622 1.02294 0.86115 0.78825 0.83506 0.77432 1.21667 1.20438 1.21607 1.18953 0.90423 0.81594 1.43656 0.90083 1.45744 1.05501 0.99311 1.82904 1.22078 0.88622 0.88939 0.96394 1.23316 1.01270 1.00123 0.93608 1.21103 0.86103 1.01684 0.88347 1.45968 1.17213 1.67430 1.05373 1.16517 0.84927 0.78289 0.81928 1.90875 1.28518 1.48751 1.71758 1.21316 0.86156 1.10982 0.92232 1.84192 1.20144 1.65634 1.35148 1.23324 0.96056 1.03145 0.83813 1.21329 0.95680 1.07987 0.97146 1.21180 0.97068 1.00313 0.92884 1.20550 0.96813 1.03216 0.88587 1.22392 0.94808 1.00652 0.97823 1.20427 0.99321 1.00667 0.87799 1.22350 0.95339 0.87058 0.95272 0.93690 0.95215 0.91970 0.90883 0.89631 0.91757 0.76231 0.77441 0.89855 0.89812 0.90787 0.90244 0.90827 0.90378 0.93934 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 11.81 55.49 0.66 -27.06 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.22 -6.22 10.73 -15.06 -0.16 -6.39 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.81 16 9 N -0.61 -15.64 3.61 -184.60 -0.67 -16.30 16 10 C 0.17 3.83 6.75 -8.37 -0.06 3.77 16 11 C -0.16 -2.94 4.17 -89.97 -0.37 -3.31 16 12 C 0.15 2.71 5.51 -4.04 -0.02 2.69 16 13 N -0.71 -11.37 5.55 -61.62 -0.34 -11.71 16 14 C 0.60 10.29 7.79 -12.86 -0.10 10.19 16 15 O -0.52 -10.52 16.87 5.19 0.09 -10.43 16 16 C -0.06 -0.82 7.13 -36.82 -0.26 -1.08 16 17 O -0.16 -1.97 10.40 4.88 0.05 -1.92 16 18 C 0.01 0.06 12.08 29.63 0.36 0.42 16 19 C -0.22 -2.38 6.93 -104.74 -0.73 -3.10 16 20 C -0.11 -1.50 6.66 -104.31 -0.69 -2.20 16 21 C -0.05 -0.62 6.76 -26.98 -0.18 -0.80 16 22 C -0.12 -0.97 7.06 -25.28 -0.18 -1.15 16 23 C -0.04 -0.36 6.76 -26.94 -0.18 -0.54 16 24 C 0.13 2.56 8.25 -8.51 -0.07 2.49 16 25 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.60 7.56 -51.93 -0.39 1.21 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.88 7.93 -51.93 -0.41 1.47 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.40 5.54 8.23 -40.82 -0.34 5.21 16 32 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -34.10 338.64 -8.64 -42.74 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.76 Total: 1.33 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.75 Total: 0.69 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.35 Total: -55.07 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.14 Total: -12.35 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.10 -8.64 -42.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031878513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.540 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds