Wall clock time and date at job start Tue Mar 31 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 C 1.53001 * 114.57173 * 272.66123 * 11 10 9 13 13 N 1.46501 * 109.47379 * 268.67262 * 12 11 10 14 14 C 1.34778 * 120.00016 * 179.97438 * 13 12 11 15 15 O 1.21700 * 119.99901 * 359.97438 * 14 13 12 16 16 C 1.46654 * 120.00082 * 179.97438 * 14 13 12 17 17 O 1.34943 * 126.00570 * 359.69732 * 16 14 13 18 18 C 1.33943 * 109.38083 * 179.86116 * 17 16 14 19 19 C 1.35150 * 108.75109 * 0.39806 * 18 17 16 20 20 C 1.36468 * 126.00985 * 179.97438 * 16 14 13 21 21 C 1.51080 * 143.66980 * 359.97438 * 20 16 14 22 22 C 1.54377 * 105.24362 * 197.16295 * 21 20 16 23 23 C 1.51144 * 143.44465 * 179.75269 * 19 18 17 24 24 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 25 25 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 26 26 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 27 27 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 28 28 H 1.08998 * 114.08759 * 139.78710 * 11 10 9 29 29 H 1.09001 * 109.47442 * 28.67369 * 12 11 10 30 30 H 1.08998 * 109.47413 * 148.67312 * 12 11 10 31 31 H 0.96994 * 119.99644 * 0.02562 * 13 12 11 32 32 H 1.08001 * 125.63051 * 180.12103 * 18 17 16 33 33 H 1.09003 * 110.29051 * 316.10760 * 21 20 16 34 34 H 1.09000 * 110.28530 * 78.12313 * 21 20 16 35 35 H 1.08998 * 110.75986 * 91.85749 * 22 21 20 36 36 H 1.08997 * 110.75871 * 215.05620 * 22 21 20 37 37 H 1.09001 * 110.28413 * 43.89001 * 23 19 18 38 38 H 1.09000 * 110.28846 * 281.78194 * 23 19 18 39 39 H 1.08996 * 113.46819 * 321.85844 * 24 9 7 40 40 H 1.09007 * 113.47055 * 92.24673 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 6 0.8454 -3.9928 -2.4929 13 7 -0.3161 -4.3838 -3.2956 14 6 -0.2378 -4.3789 -4.6411 15 8 0.7975 -4.0493 -5.1892 16 6 -1.4003 -4.7709 -5.4447 17 8 -2.6002 -5.1614 -4.9662 18 6 -3.4180 -5.4388 -5.9900 19 6 -2.7492 -5.2380 -7.1471 20 6 -1.4572 -4.8099 -6.8076 21 6 -0.6582 -4.5672 -8.0666 22 6 -1.7039 -4.4639 -9.1975 23 6 -2.8789 -5.3036 -8.6516 24 6 1.6717 -3.8136 -0.0623 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6458 -2.9419 0.5050 27 1 -0.5617 -2.1435 -1.1235 28 1 -0.0867 -4.9727 -0.7557 29 1 1.1275 -2.9686 -2.7370 30 1 1.6787 -4.6608 -2.7103 31 1 -1.1416 -4.6454 -2.8587 32 1 -4.4416 -5.7727 -5.9050 33 1 -0.0969 -3.6364 -7.9846 34 1 0.0191 -5.4012 -8.2510 35 1 -2.0068 -3.4281 -9.3502 36 1 -1.3167 -4.8920 -10.1221 37 1 -3.8291 -4.8733 -8.9681 38 1 -2.7979 -6.3355 -8.9933 39 1 2.6415 -4.0509 -0.4996 40 1 1.5408 -4.2432 0.9310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031878513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:58 Heat of formation + Delta-G solvation = 16.677143 kcal Electronic energy + Delta-G solvation = -22530.917863 eV Core-core repulsion = 19120.370645 eV Total energy + Delta-G solvation = -3410.547218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.87451 -40.81444 -39.75402 -38.26128 -35.79112 -34.23948 -31.76668 -31.55321 -30.38259 -28.54264 -27.31909 -26.35991 -24.68513 -23.85513 -22.65680 -21.28742 -21.19401 -20.10161 -18.78488 -18.44915 -17.60502 -17.31057 -16.98028 -16.89951 -16.24731 -15.99713 -15.71022 -15.64415 -14.99374 -14.88760 -14.51386 -14.14211 -13.96735 -13.65661 -13.42805 -13.03917 -12.80689 -12.68181 -12.64059 -12.60076 -12.31491 -12.08470 -12.06185 -11.85183 -11.66599 -11.47019 -11.05713 -10.86618 -10.35223 -10.17990 -9.54479 -8.92991 -7.94688 -5.25076 -0.00472 1.31740 1.42254 1.44555 1.53580 1.63089 2.04807 2.22709 2.45833 3.04789 3.29270 3.48740 3.59856 3.73436 3.83910 3.91573 4.13377 4.16643 4.19434 4.48868 4.50911 4.60078 4.76196 4.79232 4.83006 4.87152 4.93443 4.96272 5.00967 5.03710 5.09816 5.18944 5.21660 5.25940 5.32861 5.44785 5.48882 5.57226 5.81504 5.91063 6.43662 6.89370 6.99425 7.58639 8.60061 9.24376 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.003385 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.857525 B = 8270.387473 C = 8727.825339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.296 1.296 7 C -0.228 4.228 8 H 0.084 0.916 9 N -0.643 5.643 10 C 0.162 3.838 11 C -0.126 4.126 12 C 0.160 3.840 13 N -0.702 5.702 14 C 0.595 3.405 15 O -0.564 6.564 16 C -0.096 4.096 17 O -0.162 6.162 18 C 0.026 3.974 19 C -0.231 4.231 20 C -0.123 4.123 21 C -0.064 4.064 22 C -0.113 4.113 23 C -0.041 4.041 24 C 0.126 3.874 25 H 0.247 0.753 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.120 0.880 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.415 0.585 32 H 0.257 0.743 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 -16.038 -16.305 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.222 1.222 7 C -0.356 4.356 8 H 0.102 0.898 9 N -0.369 5.369 10 C 0.036 3.964 11 C -0.145 4.145 12 C 0.037 3.963 13 N -0.352 5.352 14 C 0.383 3.617 15 O -0.445 6.445 16 C -0.147 4.147 17 O -0.058 6.058 18 C -0.043 4.043 19 C -0.233 4.233 20 C -0.126 4.126 21 C -0.101 4.101 22 C -0.150 4.150 23 C -0.078 4.078 24 C 0.000 4.000 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.138 0.862 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.252 0.748 32 H 0.273 0.727 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.637 -15.470 -16.319 24.088 hybrid contribution 0.095 1.299 0.762 1.509 sum -8.542 -14.171 -15.557 22.711 Atomic orbital electron populations 1.70015 1.06452 1.25540 1.58193 1.25638 0.96547 1.00926 1.03053 0.85102 0.77867 0.79273 0.77389 1.21051 1.19288 1.22234 1.19345 0.91001 0.83164 1.42109 0.89804 1.46098 1.06848 1.00824 1.83161 1.22064 0.87675 0.90949 0.95681 1.23048 0.99729 0.99054 0.92659 1.20819 0.87385 0.99321 0.88762 1.45808 1.17139 1.67113 1.05157 1.16842 0.85335 0.77417 0.82082 1.90832 1.30408 1.50765 1.72517 1.20851 0.86742 1.14686 0.92467 1.84170 1.19637 1.65816 1.36182 1.24358 0.97025 1.00057 0.82858 1.21814 0.94300 1.08095 0.99059 1.21700 0.98980 0.99039 0.92872 1.20722 0.97764 1.02231 0.89351 1.22424 0.93938 1.01179 0.97457 1.20529 0.99939 1.01761 0.85544 1.22562 0.96751 0.83877 0.96765 0.94394 0.95707 0.95646 0.86197 0.94339 0.90500 0.74785 0.72702 0.92012 0.89420 0.90809 0.87802 0.88766 0.88633 0.92759 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 11.81 21.65 0.26 -59.17 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.98 47.51 29.56 68.60 2.03 49.53 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 7 C -0.23 -13.19 10.73 84.04 0.90 -12.29 16 8 H 0.08 4.65 7.84 -2.91 -0.02 4.62 16 9 N -0.64 -33.43 3.61 -737.95 -2.66 -36.09 16 10 C 0.16 7.63 6.75 83.27 0.56 8.19 16 11 C -0.13 -4.36 4.17 -10.37 -0.04 -4.40 16 12 C 0.16 5.84 5.51 86.38 0.48 6.32 16 13 N -0.70 -22.70 5.55 -467.09 -2.59 -25.30 16 14 C 0.60 21.22 7.79 86.44 0.67 21.90 16 15 O -0.56 -24.02 16.87 -4.35 -0.07 -24.09 16 16 C -0.10 -2.89 7.13 24.06 0.17 -2.71 16 17 O -0.16 -3.89 10.40 -5.46 -0.06 -3.95 16 18 C 0.03 0.43 12.08 67.11 0.81 1.24 16 19 C -0.23 -4.43 6.93 -19.94 -0.14 -4.57 16 20 C -0.12 -3.27 6.66 -19.66 -0.13 -3.40 16 21 C -0.06 -1.43 6.76 30.44 0.21 -1.23 16 22 C -0.11 -1.59 7.06 31.53 0.22 -1.37 16 23 C -0.04 -0.51 6.76 30.46 0.21 -0.30 16 24 C 0.13 4.91 8.25 83.18 0.69 5.59 16 25 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.03 1.36 7.56 -2.39 -0.02 1.34 16 28 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.04 1.78 7.93 -2.39 -0.02 1.76 16 30 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.42 11.19 8.23 -92.71 -0.76 10.42 16 32 H 0.26 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 40 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -78.39 338.64 2.26 -76.13 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.29 Total: 13.54 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.07 Total: 9.39 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -5.00 Total: -120.55 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.13 Total: -28.04 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Total: -78.39 2.26 -76.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031878513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.803 kcal (2) G-P(sol) polarization free energy of solvation -78.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds