Wall clock time and date at job start Tue Mar 31 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99951 * 2 1 4 4 H 1.48501 * 109.46880 * 274.97589 * 3 2 1 5 5 H 1.48500 * 109.47508 * 34.98028 * 3 2 1 6 6 H 1.48505 * 109.47076 * 154.97675 * 3 2 1 7 7 C 1.38811 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 186.72258 * 7 2 1 9 9 N 1.36942 * 120.00063 * 6.73570 * 7 2 1 10 10 C 1.47067 * 136.05521 * 356.09134 * 9 7 2 11 11 C 1.53495 * 87.98492 * 152.91953 * 10 9 7 12 12 C 1.47067 * 136.06017 * 176.15053 * 9 7 2 13 13 H 1.08998 * 113.46612 * 92.24281 * 12 9 7 14 14 C 1.52999 * 113.46463 * 321.86399 * 12 9 7 15 15 N 1.46495 * 109.47642 * 74.50479 * 14 12 9 16 16 C 1.34770 * 120.00518 * 180.02562 * 15 14 12 17 17 O 1.21701 * 120.00000 * 359.97438 * 16 15 14 18 18 C 1.46652 * 120.00534 * 179.97438 * 16 15 14 19 19 O 1.34944 * 126.00732 * 359.95908 * 18 16 15 20 20 C 1.33941 * 109.38053 * 180.02562 * 19 18 16 21 21 C 1.35147 * 108.75358 * 359.97438 * 20 19 18 22 22 C 1.36477 * 126.00912 * 179.97438 * 18 16 15 23 23 C 1.51354 * 143.59284 * 359.72763 * 22 18 16 24 24 C 1.54375 * 105.10195 * 197.14709 * 23 22 18 25 25 C 1.51151 * 143.44230 * 180.02562 * 21 20 19 26 26 H 0.97003 * 120.00059 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.46615 * 267.70219 * 10 9 7 28 28 H 1.09006 * 113.46928 * 38.14042 * 10 9 7 29 29 H 1.08999 * 114.20490 * 272.47930 * 11 10 9 30 30 H 1.09002 * 114.20633 * 139.65292 * 11 10 9 31 31 H 1.09003 * 109.47121 * 314.49876 * 14 12 9 32 32 H 1.08996 * 109.47041 * 194.50523 * 14 12 9 33 33 H 0.97004 * 119.99505 * 359.97438 * 15 14 12 34 34 H 1.07996 * 125.62538 * 180.02562 * 20 19 18 35 35 H 1.08995 * 110.24971 * 78.30917 * 23 22 18 36 36 H 1.08997 * 110.46919 * 316.09838 * 23 22 18 37 37 H 1.09004 * 110.76219 * 215.37045 * 24 23 22 38 38 H 1.09000 * 110.76457 * 92.17216 * 24 23 22 39 39 H 1.09002 * 110.28615 * 43.88506 * 25 21 20 40 40 H 1.08998 * 110.28464 * 281.77031 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6201 0.8026 6 1 3.5964 1.4121 0.5922 7 6 2.0102 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1100 9 7 1.3326 -2.3841 -0.1380 10 6 -0.0772 -2.7912 -0.2360 11 6 0.3887 -4.0182 -1.0319 12 6 1.6943 -3.8049 -0.2533 13 1 1.7197 -4.3253 0.7041 14 6 2.9506 -4.0476 -1.0920 15 7 4.1347 -3.6597 -0.3216 16 6 5.3623 -3.7864 -0.8631 17 8 5.4873 -4.2236 -1.9920 18 6 6.5477 -3.3975 -0.0921 19 8 6.5501 -2.9007 1.1626 20 6 7.8116 -2.6604 1.5430 21 6 8.6425 -3.0016 0.5332 22 6 7.8422 -3.4741 -0.5174 23 6 8.7196 -3.8776 -1.6828 24 6 10.1388 -4.0117 -1.0903 25 6 10.0965 -3.0608 0.1247 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5245 -3.0419 0.7258 28 1 -0.6885 -2.1022 -0.8190 29 1 0.4755 -3.8482 -2.1051 30 1 -0.1361 -4.9398 -0.7803 31 1 2.8993 -3.4526 -2.0039 32 1 3.0159 -5.1043 -1.3511 33 1 4.0351 -3.3108 0.5780 34 1 8.1150 -2.2607 2.4993 35 1 8.7028 -3.1061 -2.4526 36 1 8.3906 -4.8314 -2.0953 37 1 10.8903 -3.6867 -1.8099 38 1 10.3292 -5.0364 -0.7713 39 1 10.7019 -3.4597 0.9387 40 1 10.4498 -2.0696 -0.1596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038561733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:04 Heat of formation + Delta-G solvation = 39.413653 kcal Electronic energy + Delta-G solvation = -22977.734123 eV Core-core repulsion = 19568.172834 eV Total energy + Delta-G solvation = -3409.561289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.84203 -39.23943 -38.02451 -37.37023 -34.09874 -32.22517 -30.72443 -30.54831 -28.30093 -27.89008 -26.68756 -23.48708 -23.42305 -22.19159 -21.31194 -20.25501 -19.73158 -19.08963 -17.62276 -16.63922 -16.53378 -15.84314 -15.65149 -15.29482 -15.09794 -14.40595 -14.19688 -14.08019 -13.77869 -13.31751 -13.08014 -12.98697 -12.76475 -11.93259 -11.83102 -11.69745 -11.51448 -11.34587 -11.32250 -11.17050 -11.01096 -10.77135 -10.58265 -10.14902 -9.84624 -9.82910 -9.32889 -9.28970 -8.79049 -8.74983 -8.41992 -6.91831 -5.78495 -3.10049 1.16117 2.27615 2.77868 3.38273 3.40118 3.44004 3.45075 3.57607 3.94965 4.42835 4.60833 4.76947 4.84419 4.99805 5.07876 5.19701 5.37547 5.45393 5.53188 5.56288 5.58877 5.70156 5.71752 5.82551 5.89964 5.97630 6.01150 6.07035 6.10907 6.30319 6.32657 6.38622 6.58281 6.67467 6.77257 6.92104 7.21468 7.39255 7.56555 7.83288 7.96676 8.40120 9.02135 9.69484 10.61727 11.38951 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004566 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.645672 B = 6131.186531 C = 7190.148429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.150 3.850 11 C -0.160 4.160 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.121 3.879 15 N -0.700 5.700 16 C 0.597 3.403 17 O -0.530 6.530 18 C -0.053 4.053 19 O -0.152 6.152 20 C 0.007 3.993 21 C -0.222 4.222 22 C -0.115 4.115 23 C -0.052 4.052 24 C -0.119 4.119 25 C -0.044 4.044 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.408 0.592 34 H 0.208 0.792 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.041 -8.879 1.495 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.199 4.199 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.349 5.349 16 C 0.383 3.617 17 O -0.410 6.410 18 C -0.105 4.105 19 O -0.048 6.048 20 C -0.062 4.062 21 C -0.223 4.223 22 C -0.118 4.118 23 C -0.089 4.089 24 C -0.156 4.156 25 C -0.082 4.082 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.243 0.757 34 H 0.225 0.775 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.849 -8.767 0.882 18.134 hybrid contribution 0.475 1.278 0.741 1.552 sum 16.324 -7.489 1.623 18.033 Atomic orbital electron populations 1.69839 1.04972 1.25273 1.56296 1.24757 0.95597 0.97391 1.02413 0.86180 0.78686 0.83777 0.77627 1.21545 1.21705 1.20644 1.18863 0.90482 0.81485 1.43363 0.90251 1.45735 1.02666 0.98952 1.85360 1.22054 0.88659 0.91152 0.95642 1.23644 0.96984 0.99184 1.00053 1.22432 0.91792 0.88255 0.95653 0.93368 1.21907 0.83426 0.99148 0.95878 1.45907 1.05393 1.63981 1.19652 1.16555 0.81342 0.78720 0.85111 1.90832 1.85600 1.47133 1.17397 1.21342 0.94958 1.09131 0.85079 1.84231 1.29273 1.63409 1.27858 1.23333 0.80128 1.02936 0.99836 1.21292 0.98221 1.07482 0.95334 1.21210 0.91343 1.00770 0.98455 1.20572 0.91617 1.02438 0.94278 1.22376 0.96536 0.99867 0.96846 1.20410 0.89948 1.00209 0.97596 0.93687 0.95741 0.90983 0.90128 0.92254 0.90696 0.91893 0.75686 0.77510 0.89839 0.90023 0.90316 0.90929 0.90893 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 11.53 55.49 0.64 -26.43 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.21 -5.85 10.54 -15.06 -0.16 -6.01 16 8 H 0.08 2.11 7.49 -52.49 -0.39 1.72 16 9 N -0.60 -14.79 3.65 -177.00 -0.65 -15.43 16 10 C 0.15 3.45 7.42 -8.51 -0.06 3.39 16 11 C -0.16 -2.90 8.03 -26.22 -0.21 -3.11 16 12 C 0.13 2.46 4.10 -72.40 -0.30 2.16 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.23 5.52 -4.04 -0.02 2.21 16 15 N -0.70 -12.84 5.36 -61.63 -0.33 -13.17 16 16 C 0.60 11.18 7.79 -12.87 -0.10 11.08 16 17 O -0.53 -10.98 16.87 5.19 0.09 -10.90 16 18 C -0.05 -0.89 7.13 -36.82 -0.26 -1.16 16 19 O -0.15 -2.33 10.40 4.88 0.05 -2.28 16 20 C 0.01 0.09 12.08 29.63 0.36 0.44 16 21 C -0.22 -2.74 6.93 -104.74 -0.73 -3.46 16 22 C -0.11 -1.70 6.66 -104.17 -0.69 -2.40 16 23 C -0.05 -0.63 6.78 -26.84 -0.18 -0.81 16 24 C -0.12 -1.04 7.04 -25.31 -0.18 -1.22 16 25 C -0.04 -0.40 6.76 -26.96 -0.18 -0.58 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.84 7.11 -51.93 -0.37 1.48 16 29 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.41 7.38 8.07 -40.82 -0.33 7.05 16 34 H 0.21 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -32.74 337.69 -8.67 -41.41 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.72 Total: 4.06 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.81 Total: 0.30 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.34 Total: -55.03 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.14 Total: -13.18 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.74 -8.67 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038561733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.823 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds