Wall clock time and date at job start Tue Mar 31 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99951 * 2 1 4 4 H 1.48501 * 109.46880 * 274.97589 * 3 2 1 5 5 H 1.48500 * 109.47508 * 34.98028 * 3 2 1 6 6 H 1.48505 * 109.47076 * 154.97675 * 3 2 1 7 7 C 1.38811 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 186.72258 * 7 2 1 9 9 N 1.36942 * 120.00063 * 6.73570 * 7 2 1 10 10 C 1.47067 * 136.05521 * 356.09134 * 9 7 2 11 11 C 1.53495 * 87.98492 * 152.91953 * 10 9 7 12 12 C 1.47067 * 136.06017 * 176.15053 * 9 7 2 13 13 H 1.08998 * 113.46612 * 92.24281 * 12 9 7 14 14 C 1.52999 * 113.46463 * 321.86399 * 12 9 7 15 15 N 1.46495 * 109.47642 * 74.50479 * 14 12 9 16 16 C 1.34770 * 120.00518 * 180.02562 * 15 14 12 17 17 O 1.21701 * 120.00000 * 359.97438 * 16 15 14 18 18 C 1.46652 * 120.00534 * 179.97438 * 16 15 14 19 19 O 1.34944 * 126.00732 * 359.95908 * 18 16 15 20 20 C 1.33941 * 109.38053 * 180.02562 * 19 18 16 21 21 C 1.35147 * 108.75358 * 359.97438 * 20 19 18 22 22 C 1.36477 * 126.00912 * 179.97438 * 18 16 15 23 23 C 1.51354 * 143.59284 * 359.72763 * 22 18 16 24 24 C 1.54375 * 105.10195 * 197.14709 * 23 22 18 25 25 C 1.51151 * 143.44230 * 180.02562 * 21 20 19 26 26 H 0.97003 * 120.00059 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.46615 * 267.70219 * 10 9 7 28 28 H 1.09006 * 113.46928 * 38.14042 * 10 9 7 29 29 H 1.08999 * 114.20490 * 272.47930 * 11 10 9 30 30 H 1.09002 * 114.20633 * 139.65292 * 11 10 9 31 31 H 1.09003 * 109.47121 * 314.49876 * 14 12 9 32 32 H 1.08996 * 109.47041 * 194.50523 * 14 12 9 33 33 H 0.97004 * 119.99505 * 359.97438 * 15 14 12 34 34 H 1.07996 * 125.62538 * 180.02562 * 20 19 18 35 35 H 1.08995 * 110.24971 * 78.30917 * 23 22 18 36 36 H 1.08997 * 110.46919 * 316.09838 * 23 22 18 37 37 H 1.09004 * 110.76219 * 215.37045 * 24 23 22 38 38 H 1.09000 * 110.76457 * 92.17216 * 24 23 22 39 39 H 1.09002 * 110.28615 * 43.88506 * 25 21 20 40 40 H 1.08998 * 110.28464 * 281.77031 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6201 0.8026 6 1 3.5964 1.4121 0.5922 7 6 2.0102 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1100 9 7 1.3326 -2.3841 -0.1380 10 6 -0.0772 -2.7912 -0.2360 11 6 0.3887 -4.0182 -1.0319 12 6 1.6943 -3.8049 -0.2533 13 1 1.7197 -4.3253 0.7041 14 6 2.9506 -4.0476 -1.0920 15 7 4.1347 -3.6597 -0.3216 16 6 5.3623 -3.7864 -0.8631 17 8 5.4873 -4.2236 -1.9920 18 6 6.5477 -3.3975 -0.0921 19 8 6.5501 -2.9007 1.1626 20 6 7.8116 -2.6604 1.5430 21 6 8.6425 -3.0016 0.5332 22 6 7.8422 -3.4741 -0.5174 23 6 8.7196 -3.8776 -1.6828 24 6 10.1388 -4.0117 -1.0903 25 6 10.0965 -3.0608 0.1247 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5245 -3.0419 0.7258 28 1 -0.6885 -2.1022 -0.8190 29 1 0.4755 -3.8482 -2.1051 30 1 -0.1361 -4.9398 -0.7803 31 1 2.8993 -3.4526 -2.0039 32 1 3.0159 -5.1043 -1.3511 33 1 4.0351 -3.3108 0.5780 34 1 8.1150 -2.2607 2.4993 35 1 8.7028 -3.1061 -2.4526 36 1 8.3906 -4.8314 -2.0953 37 1 10.8903 -3.6867 -1.8099 38 1 10.3292 -5.0364 -0.7713 39 1 10.7019 -3.4597 0.9387 40 1 10.4498 -2.0696 -0.1596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038561733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:03 Heat of formation + Delta-G solvation = 17.942442 kcal Electronic energy + Delta-G solvation = -22978.665184 eV Core-core repulsion = 19568.172834 eV Total energy + Delta-G solvation = -3410.492350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.89287 -40.75087 -39.67702 -38.26452 -35.61670 -34.27277 -31.75462 -31.55265 -30.01308 -29.45423 -27.78647 -25.41590 -24.64210 -23.44299 -22.54589 -21.30019 -21.22848 -20.60298 -18.94185 -18.32289 -17.64865 -17.15688 -17.06007 -16.90746 -16.17769 -15.92564 -15.68287 -15.56790 -14.98772 -14.87427 -14.65899 -14.01471 -13.69709 -13.63864 -13.34318 -13.05393 -12.74339 -12.67398 -12.65625 -12.62267 -12.34051 -12.09509 -12.06773 -11.90358 -11.66389 -11.51207 -11.03536 -10.80084 -10.33840 -10.16249 -9.56249 -8.91870 -7.90923 -5.21218 -0.01487 1.29414 1.40001 1.42463 1.49666 1.66256 2.05023 2.24738 2.44743 3.03505 3.31968 3.40771 3.69098 3.80700 3.91656 4.06199 4.13126 4.18066 4.19385 4.31761 4.50935 4.60495 4.68024 4.77994 4.80796 4.85546 4.93782 4.99950 5.04815 5.06309 5.08668 5.18383 5.28265 5.31151 5.32815 5.43528 5.56965 5.73214 5.80906 5.95403 6.41160 6.91670 6.97491 7.61519 8.61503 9.26896 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004566 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.645672 B = 6131.186531 C = 7190.148429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.964 3.036 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.209 4.209 8 H 0.080 0.920 9 N -0.630 5.630 10 C 0.142 3.858 11 C -0.131 4.131 12 C 0.131 3.869 13 H 0.069 0.931 14 C 0.129 3.871 15 N -0.702 5.702 16 C 0.595 3.405 17 O -0.561 6.561 18 C -0.099 4.099 19 O -0.169 6.169 20 C 0.018 3.982 21 C -0.229 4.229 22 C -0.122 4.122 23 C -0.061 4.061 24 C -0.110 4.110 25 C -0.042 4.042 26 H 0.246 0.754 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.408 0.592 34 H 0.252 0.748 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.706 -9.758 2.372 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.793 3.207 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.337 4.337 8 H 0.098 0.902 9 N -0.356 5.356 10 C 0.016 3.984 11 C -0.169 4.169 12 C 0.025 3.975 13 H 0.086 0.914 14 C 0.005 3.995 15 N -0.350 5.350 16 C 0.383 3.617 17 O -0.443 6.443 18 C -0.150 4.150 19 O -0.065 6.065 20 C -0.051 4.051 21 C -0.231 4.231 22 C -0.125 4.125 23 C -0.098 4.098 24 C -0.147 4.147 25 C -0.079 4.079 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.243 0.757 34 H 0.268 0.732 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.533 -9.681 1.767 20.984 hybrid contribution -0.279 1.487 0.506 1.596 sum 18.254 -8.194 2.273 20.137 Atomic orbital electron populations 1.70004 1.06174 1.25267 1.58515 1.25476 0.96392 1.00324 1.03684 0.85265 0.77972 0.80328 0.77087 1.22074 1.21898 1.19507 1.19145 0.90770 0.82805 1.40995 0.90186 1.46057 1.03833 1.00402 1.85309 1.22081 0.87691 0.92672 0.95913 1.23462 0.95534 0.98642 0.99303 1.22592 0.92832 0.85379 0.96688 0.91408 1.21748 0.83286 0.99969 0.94538 1.45892 1.05435 1.64105 1.19563 1.16817 0.81889 0.78023 0.84963 1.90791 1.86185 1.48672 1.18665 1.21040 0.94838 1.12777 0.86393 1.84201 1.31156 1.63818 1.27318 1.24319 0.78869 1.00752 1.01138 1.21818 0.99786 1.07050 0.94407 1.21782 0.91257 0.99323 1.00117 1.20766 0.93498 1.01708 0.93790 1.22405 0.94519 1.00617 0.97141 1.20547 0.87940 1.01085 0.98305 0.94456 0.95905 0.94481 0.90051 0.87932 0.93385 0.89533 0.75653 0.73203 0.90053 0.91047 0.87911 0.90063 0.88434 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.74 11.53 21.65 0.25 -57.49 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 46.85 29.56 68.60 2.03 48.88 16 4 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.21 -11.52 10.54 84.03 0.89 -10.63 16 8 H 0.08 4.30 7.49 -2.91 -0.02 4.27 16 9 N -0.63 -31.15 3.65 -713.90 -2.61 -33.76 16 10 C 0.14 6.55 7.42 83.18 0.62 7.17 16 11 C -0.13 -4.52 8.03 30.93 0.25 -4.27 16 12 C 0.13 4.95 4.10 41.79 0.17 5.12 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C 0.13 4.70 5.52 86.38 0.48 5.17 16 15 N -0.70 -25.86 5.36 -467.12 -2.50 -28.36 16 16 C 0.60 22.72 7.79 86.44 0.67 23.39 16 17 O -0.56 -23.85 16.87 -4.35 -0.07 -23.92 16 18 C -0.10 -3.35 7.13 24.06 0.17 -3.17 16 19 O -0.17 -5.03 10.40 -5.44 -0.06 -5.09 16 20 C 0.02 0.39 12.08 67.11 0.81 1.20 16 21 C -0.23 -5.08 6.93 -19.94 -0.14 -5.22 16 22 C -0.12 -3.52 6.66 -19.57 -0.13 -3.65 16 23 C -0.06 -1.41 6.78 30.52 0.21 -1.20 16 24 C -0.11 -1.58 7.04 31.51 0.22 -1.36 16 25 C -0.04 -0.60 6.76 30.44 0.21 -0.39 16 26 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 1.95 7.11 -2.38 -0.02 1.94 16 29 H 0.08 2.82 8.12 -2.39 -0.02 2.80 16 30 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 32 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 33 H 0.41 14.85 8.07 -92.71 -0.75 14.10 16 34 H 0.25 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 1.01 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -73.72 337.69 2.23 -71.49 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.31 Total: 19.42 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.89 Total: 8.84 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -4.86 Total: -119.61 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.13 Total: -29.01 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -73.72 2.23 -71.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038561733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.431 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds