Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.69362 * 2 1 4 4 C 1.53406 * 109.69713 * 239.40730 * 2 1 3 5 5 O 1.42842 * 108.36483 * 175.54991 * 4 2 1 6 6 C 1.35848 * 117.84744 * 49.19147 * 5 4 2 7 7 C 1.39144 * 118.49401 * 162.96063 * 6 5 4 8 8 C 1.37970 * 120.21929 * 179.75028 * 7 6 5 9 9 C 1.38296 * 119.95310 * 0.02562 * 8 7 6 10 10 C 1.38102 * 119.98245 * 0.06998 * 9 8 7 11 11 C 1.38369 * 121.81100 * 342.85701 * 6 5 4 12 12 C 1.50768 * 121.41095 * 0.33083 * 11 6 5 13 13 H 1.08998 * 109.44006 * 222.24455 * 12 11 6 14 14 O 1.45204 * 109.43541 * 102.37020 * 12 11 6 15 15 C 1.34229 * 116.99937 * 89.78529 * 14 12 11 16 16 O 1.20830 * 119.99831 * 0.02562 * 15 14 12 17 17 C 1.50698 * 120.00243 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.47260 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46951 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00335 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99632 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99985 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99818 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47118 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47115 * 119.99984 * 23 21 19 26 26 H 1.48500 * 109.47229 * 240.00093 * 23 21 19 27 27 H 1.09002 * 109.47153 * 299.43795 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.43986 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.43967 * 1 2 3 30 30 H 1.08998 * 109.68477 * 295.27864 * 4 2 1 31 31 H 1.08993 * 109.68990 * 55.84028 * 4 2 1 32 32 H 1.08008 * 119.89072 * 359.77553 * 7 6 5 33 33 H 1.07992 * 120.02376 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.00616 * 180.09943 * 9 8 7 35 35 H 1.07999 * 119.83569 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47346 * 300.00621 * 17 15 14 37 37 H 1.08999 * 109.46720 * 60.00742 * 17 15 14 38 38 H 1.08999 * 109.46738 * 300.00024 * 18 17 15 39 39 H 1.08998 * 109.46998 * 59.99731 * 18 17 15 40 40 H 0.96999 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0470 -0.7350 -1.2433 5 8 3.4712 -0.6283 -1.2694 6 6 4.1514 -0.9332 -0.1337 7 6 5.5165 -1.1863 -0.2252 8 6 6.2431 -1.4943 0.9066 9 6 5.6136 -1.5527 2.1366 10 6 4.2584 -1.3040 2.2308 11 6 3.5239 -0.9948 1.0980 12 6 2.0460 -0.7327 1.2410 13 1 1.8703 -0.1185 2.1241 14 8 1.3430 -1.9951 1.3838 15 6 1.1780 -2.4631 2.6310 16 8 1.6065 -1.8382 3.5722 17 6 0.4575 -3.7671 2.8574 18 6 0.4066 -4.0681 4.3567 19 6 -0.3134 -5.3725 4.5830 20 1 -0.6961 -5.9311 3.7417 21 6 -0.4827 -5.8532 5.8642 22 7 -0.0153 -5.1736 6.8886 23 14 -1.3758 -7.4696 6.1448 24 1 -1.7999 -8.0341 4.8384 25 1 -0.4660 -8.4262 6.8249 26 1 -2.5709 -7.2339 6.9941 27 1 -0.3633 0.5051 0.8950 28 1 -0.3633 -1.0276 -0.0100 29 1 -0.3634 0.5225 -0.8849 30 1 1.7582 -1.7850 -1.1957 31 1 1.6283 -0.2789 -2.1402 32 1 6.0092 -1.1410 -1.1853 33 1 7.3024 -1.6906 0.8319 34 1 6.1818 -1.7921 3.0233 35 1 3.7693 -1.3498 3.1926 36 1 -0.5576 -3.6939 2.4672 37 1 0.9874 -4.5690 2.3433 38 1 1.4217 -4.1413 4.7471 39 1 -0.1234 -3.2661 4.8705 40 1 -0.1348 -5.5116 7.7899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117663824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -115.768217 kcal Electronic energy + Delta-G solvation = -23193.762647 eV Core-core repulsion = 19745.179416 eV Total energy + Delta-G solvation = -3448.583231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18941 -39.61644 -37.65701 -36.51391 -34.21536 -33.60689 -31.55464 -31.03770 -30.30063 -27.05873 -26.38857 -25.35062 -22.89667 -22.47331 -22.10350 -20.22671 -19.35179 -18.04542 -17.45369 -16.67577 -16.43730 -16.22895 -15.60349 -15.42073 -14.92251 -14.50030 -14.47682 -14.14762 -13.80294 -13.54941 -13.17897 -12.77754 -12.55219 -12.37927 -12.27846 -12.12753 -11.63453 -11.56791 -11.40043 -11.20876 -11.00128 -10.91803 -10.65947 -10.52612 -10.22798 -10.08406 -9.92285 -9.60322 -9.19273 -8.93228 -8.40193 -8.26931 -6.03886 -4.08666 1.16484 1.38998 2.77006 3.05358 3.15135 3.29213 3.36820 3.40378 3.77938 4.28229 4.41976 4.43411 4.51116 4.69255 4.92009 5.04060 5.21287 5.22251 5.30524 5.31866 5.37210 5.42367 5.49071 5.51363 5.65752 5.70004 5.84073 5.97521 6.08157 6.09429 6.17763 6.22867 6.42337 6.51954 6.61745 6.71073 6.90725 7.32079 7.64010 7.70494 7.95393 8.22423 8.37943 8.98518 9.55651 11.07139 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.003886 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.102498 B = 7202.757481 C = 7985.509257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 H 0.097 0.903 4 C 0.066 3.934 5 O -0.317 6.317 6 C 0.148 3.852 7 C -0.160 4.160 8 C -0.079 4.079 9 C -0.157 4.157 10 C -0.065 4.065 11 C -0.186 4.186 12 C 0.134 3.866 13 H 0.098 0.902 14 O -0.353 6.353 15 C 0.458 3.542 16 O -0.504 6.504 17 C -0.103 4.103 18 C 0.034 3.966 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 10.761 -16.440 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 H 0.115 0.885 4 C -0.009 4.009 5 O -0.230 6.230 6 C 0.102 3.898 7 C -0.178 4.178 8 C -0.097 4.097 9 C -0.175 4.175 10 C -0.083 4.083 11 C -0.187 4.187 12 C 0.079 3.921 13 H 0.116 0.884 14 O -0.271 6.271 15 C 0.302 3.698 16 O -0.390 6.390 17 C -0.141 4.141 18 C -0.003 4.003 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.300 11.037 -16.157 20.884 hybrid contribution -0.521 -0.805 0.566 1.114 sum 6.780 10.232 -15.591 19.842 Atomic orbital electron populations 1.21678 0.92589 1.03587 1.02332 1.22006 0.98422 0.99728 0.93993 0.88456 1.23099 0.77615 1.01611 0.98543 1.85970 1.20740 1.83374 1.32944 1.18675 0.91654 0.94834 0.84618 1.20548 0.91570 1.05942 0.99749 1.20988 0.99658 0.97086 0.91932 1.21099 0.94766 1.03610 0.98011 1.21374 0.94074 0.94264 0.98569 1.20011 0.95958 1.09484 0.93258 1.21290 0.86632 0.84726 0.99404 0.88420 1.86668 1.69706 1.37772 1.32993 1.24786 0.76895 0.88258 0.79901 1.90582 1.46972 1.58554 1.42914 1.21775 0.99413 0.88856 1.04047 1.19011 0.98471 0.96961 0.85862 1.21189 1.36958 1.05907 0.92580 0.92295 1.25012 0.95684 0.97436 0.96128 1.70000 1.45602 1.38463 0.98697 0.86500 0.79451 0.83540 0.78285 1.19645 1.20949 1.20945 0.91910 0.90919 0.91964 0.90658 0.87294 0.85238 0.85367 0.85591 0.84351 0.89015 0.89049 0.95608 0.95590 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.93 37.16 0.33 -1.06 16 2 C -0.12 -1.34 2.81 -90.37 -0.25 -1.59 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.07 0.69 6.30 37.37 0.24 0.92 16 5 O -0.32 -3.99 10.27 -19.26 -0.20 -4.19 16 6 C 0.15 2.03 6.47 -39.20 -0.25 1.77 16 7 C -0.16 -1.94 9.94 -39.34 -0.39 -2.33 16 8 C -0.08 -0.90 10.04 -39.66 -0.40 -1.29 16 9 C -0.16 -2.05 10.04 -39.61 -0.40 -2.44 16 10 C -0.06 -0.99 9.31 -39.53 -0.37 -1.36 16 11 C -0.19 -2.76 5.37 -104.44 -0.56 -3.32 16 12 C 0.13 1.93 2.13 -27.81 -0.06 1.87 16 13 H 0.10 1.50 7.15 -51.93 -0.37 1.12 16 14 O -0.35 -5.74 8.42 -39.25 -0.33 -6.07 16 15 C 0.46 8.81 7.73 36.00 0.28 9.09 16 16 O -0.50 -10.92 13.23 -18.75 -0.25 -11.17 16 17 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 18 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 19 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.77 7.42 -51.93 -0.39 0.38 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 31 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.14 2.36 6.17 -52.49 -0.32 2.04 16 36 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 38 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -31.93 333.63 -8.24 -40.17 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.68 Total: 0.59 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.53 Total: -14.60 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.78 Total: -21.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.93 -8.24 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117663824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.597 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds