Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.69362 * 2 1 4 4 C 1.53406 * 109.69713 * 239.40730 * 2 1 3 5 5 O 1.42842 * 108.36483 * 175.54991 * 4 2 1 6 6 C 1.35848 * 117.84744 * 49.19147 * 5 4 2 7 7 C 1.39144 * 118.49401 * 162.96063 * 6 5 4 8 8 C 1.37970 * 120.21929 * 179.75028 * 7 6 5 9 9 C 1.38296 * 119.95310 * 0.02562 * 8 7 6 10 10 C 1.38102 * 119.98245 * 0.06998 * 9 8 7 11 11 C 1.38369 * 121.81100 * 342.85701 * 6 5 4 12 12 C 1.50768 * 121.41095 * 0.33083 * 11 6 5 13 13 H 1.08998 * 109.44006 * 222.24455 * 12 11 6 14 14 O 1.45204 * 109.43541 * 102.37020 * 12 11 6 15 15 C 1.34229 * 116.99937 * 89.78529 * 14 12 11 16 16 O 1.20830 * 119.99831 * 0.02562 * 15 14 12 17 17 C 1.50698 * 120.00243 * 179.97438 * 15 14 12 18 18 C 1.53004 * 109.47260 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46951 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00335 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99632 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99985 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99818 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47118 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47115 * 119.99984 * 23 21 19 26 26 H 1.48500 * 109.47229 * 240.00093 * 23 21 19 27 27 H 1.09002 * 109.47153 * 299.43795 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.43986 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.43967 * 1 2 3 30 30 H 1.08998 * 109.68477 * 295.27864 * 4 2 1 31 31 H 1.08993 * 109.68990 * 55.84028 * 4 2 1 32 32 H 1.08008 * 119.89072 * 359.77553 * 7 6 5 33 33 H 1.07992 * 120.02376 * 179.97438 * 8 7 6 34 34 H 1.07999 * 120.00616 * 180.09943 * 9 8 7 35 35 H 1.07999 * 119.83569 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47346 * 300.00621 * 17 15 14 37 37 H 1.08999 * 109.46720 * 60.00742 * 17 15 14 38 38 H 1.08999 * 109.46738 * 300.00024 * 18 17 15 39 39 H 1.08998 * 109.46998 * 59.99731 * 18 17 15 40 40 H 0.96999 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0470 -0.7350 -1.2433 5 8 3.4712 -0.6283 -1.2694 6 6 4.1514 -0.9332 -0.1337 7 6 5.5165 -1.1863 -0.2252 8 6 6.2431 -1.4943 0.9066 9 6 5.6136 -1.5527 2.1366 10 6 4.2584 -1.3040 2.2308 11 6 3.5239 -0.9948 1.0980 12 6 2.0460 -0.7327 1.2410 13 1 1.8703 -0.1185 2.1241 14 8 1.3430 -1.9951 1.3838 15 6 1.1780 -2.4631 2.6310 16 8 1.6065 -1.8382 3.5722 17 6 0.4575 -3.7671 2.8574 18 6 0.4066 -4.0681 4.3567 19 6 -0.3134 -5.3725 4.5830 20 1 -0.6961 -5.9311 3.7417 21 6 -0.4827 -5.8532 5.8642 22 7 -0.0153 -5.1736 6.8886 23 14 -1.3758 -7.4696 6.1448 24 1 -1.7999 -8.0341 4.8384 25 1 -0.4660 -8.4262 6.8249 26 1 -2.5709 -7.2339 6.9941 27 1 -0.3633 0.5051 0.8950 28 1 -0.3633 -1.0276 -0.0100 29 1 -0.3634 0.5225 -0.8849 30 1 1.7582 -1.7850 -1.1957 31 1 1.6283 -0.2789 -2.1402 32 1 6.0092 -1.1410 -1.1853 33 1 7.3024 -1.6906 0.8319 34 1 6.1818 -1.7921 3.0233 35 1 3.7693 -1.3498 3.1926 36 1 -0.5576 -3.6939 2.4672 37 1 0.9874 -4.5690 2.3433 38 1 1.4217 -4.1413 4.7471 39 1 -0.1234 -3.2661 4.8705 40 1 -0.1348 -5.5116 7.7899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117663824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -133.278108 kcal Electronic energy + Delta-G solvation = -23194.521932 eV Core-core repulsion = 19745.179416 eV Total energy + Delta-G solvation = -3449.342517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.32825 -40.96668 -38.63061 -37.88632 -35.66942 -35.29292 -33.17584 -32.39559 -31.30716 -28.38345 -27.72325 -26.62856 -24.30071 -23.84755 -23.13614 -21.79025 -20.54640 -19.13546 -19.03205 -18.17363 -17.68354 -17.56536 -16.92050 -16.71618 -16.47921 -15.92966 -15.65245 -15.21144 -14.83606 -14.71875 -14.60670 -14.27987 -14.17068 -13.49556 -13.44135 -13.24956 -13.11925 -12.88116 -12.59206 -12.56930 -12.50849 -12.43285 -12.03882 -11.85887 -11.76275 -11.57677 -11.43259 -11.29078 -11.23379 -10.60211 -9.98941 -9.28237 -8.21628 -6.35445 0.12121 0.35307 1.20908 1.42371 1.43244 1.56622 1.71462 2.24769 2.41813 2.73479 3.12447 3.29750 3.44582 3.58874 3.60327 3.91878 4.12812 4.16631 4.21479 4.30657 4.40450 4.42725 4.44411 4.45818 4.54200 4.60803 4.77162 4.86569 4.88425 4.96396 5.01701 5.21473 5.29609 5.33884 5.42904 5.45773 5.49907 5.52613 5.73786 5.78565 6.11406 6.34682 6.76584 6.84396 7.35021 8.91208 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.003886 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.102498 B = 7202.757481 C = 7985.509257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.110 0.890 4 C 0.064 3.936 5 O -0.317 6.317 6 C 0.140 3.860 7 C -0.159 4.159 8 C -0.068 4.068 9 C -0.165 4.165 10 C -0.093 4.093 11 C -0.206 4.206 12 C 0.128 3.872 13 H 0.078 0.922 14 O -0.342 6.342 15 C 0.464 3.536 16 O -0.536 6.536 17 C -0.094 4.094 18 C 0.041 3.959 19 C -0.544 4.544 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.254 1.254 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.109 0.891 38 H -0.012 1.012 39 H -0.009 1.009 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 10.116 -19.435 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 H 0.128 0.872 4 C -0.010 4.010 5 O -0.231 6.231 6 C 0.094 3.906 7 C -0.177 4.177 8 C -0.086 4.086 9 C -0.183 4.183 10 C -0.111 4.111 11 C -0.207 4.207 12 C 0.074 3.926 13 H 0.096 0.904 14 O -0.259 6.259 15 C 0.309 3.691 16 O -0.425 6.425 17 C -0.131 4.131 18 C 0.004 3.996 19 C -0.582 4.582 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.177 1.177 25 H -0.206 1.206 26 H -0.205 1.205 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.007 0.993 39 H 0.009 0.991 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.352 10.397 -19.195 23.035 hybrid contribution -0.459 -0.523 1.465 1.621 sum 6.894 9.874 -17.730 21.433 Atomic orbital electron populations 1.21680 0.91479 1.03286 1.03461 1.22058 0.99280 0.99783 0.92338 0.87173 1.23331 0.76635 1.01454 0.99615 1.85977 1.21786 1.83155 1.32206 1.18875 0.92546 0.94801 0.84381 1.20966 0.90991 1.04624 1.01141 1.21387 1.01322 0.95193 0.90689 1.21336 0.93942 1.03390 0.99640 1.21305 0.95460 0.96598 0.97722 1.20064 0.96005 1.10780 0.93840 1.21573 0.86995 0.83457 1.00606 0.90439 1.86615 1.69615 1.38903 1.30752 1.24490 0.76285 0.87836 0.80476 1.90585 1.48265 1.59474 1.44200 1.21513 1.01395 0.90093 1.00118 1.18768 0.95557 0.95761 0.89492 1.21658 1.36747 1.06411 0.93344 0.90564 1.26076 0.96491 1.01603 0.95840 1.70163 1.47230 1.40770 0.99341 0.85279 0.77892 0.78289 0.78843 1.17717 1.20622 1.20503 0.92808 0.91943 0.88806 0.91503 0.83522 0.82581 0.81661 0.84441 0.87427 0.86559 0.87258 0.99349 0.99060 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.93 71.98 0.64 -1.84 16 2 C -0.12 -2.37 2.81 -10.63 -0.03 -2.40 16 3 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.06 1.17 6.30 72.12 0.45 1.62 16 5 O -0.32 -7.25 10.27 -91.84 -0.94 -8.20 16 6 C 0.14 3.65 6.47 22.52 0.15 3.79 16 7 C -0.16 -3.46 9.94 22.42 0.22 -3.24 16 8 C -0.07 -1.40 10.04 22.22 0.22 -1.18 16 9 C -0.16 -4.30 10.04 22.25 0.22 -4.08 16 10 C -0.09 -3.00 9.31 22.30 0.21 -2.79 16 11 C -0.21 -6.21 5.37 -19.75 -0.11 -6.32 16 12 C 0.13 3.78 2.13 29.89 0.06 3.84 16 13 H 0.08 2.56 7.15 -2.39 -0.02 2.55 16 14 O -0.34 -11.30 8.42 -51.41 -0.43 -11.73 16 15 C 0.46 18.63 7.73 71.24 0.55 19.18 16 16 O -0.54 -25.02 13.23 21.95 0.29 -24.73 16 17 C -0.09 -3.86 5.75 29.85 0.17 -3.68 16 18 C 0.04 2.26 4.26 29.85 0.13 2.39 16 19 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 20 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 21 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 22 N -0.94 -58.21 13.29 21.45 0.28 -57.93 16 23 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 24 H -0.25 -10.57 7.11 99.48 0.71 -9.87 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.23 7.42 -2.39 -0.02 1.21 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 1.36 7.88 -2.39 -0.02 1.34 16 31 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.11 4.09 6.17 -2.91 -0.02 4.07 16 36 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 37 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 38 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 39 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -72.52 333.63 5.85 -66.67 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.03 Total: 14.78 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.59 Total: -24.64 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.28 Total: -57.93 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.09 Total: -44.65 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.52 5.85 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117663824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.612 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds