Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.73169 * 2 1 4 4 C 1.53416 * 109.69746 * 120.57949 * 2 1 3 5 5 O 1.42834 * 108.37078 * 54.95071 * 4 2 1 6 6 C 1.35850 * 117.85885 * 49.15131 * 5 4 2 7 7 C 1.39142 * 118.49710 * 162.97889 * 6 5 4 8 8 C 1.37965 * 120.21695 * 179.81506 * 7 6 5 9 9 C 1.38289 * 119.95731 * 359.97438 * 8 7 6 10 10 C 1.38105 * 119.98300 * 0.08118 * 9 8 7 11 11 C 1.38372 * 121.80633 * 342.92040 * 6 5 4 12 12 C 1.50772 * 121.41304 * 0.29550 * 11 6 5 13 13 H 1.09002 * 109.39615 * 102.33765 * 12 11 6 14 14 O 1.45199 * 109.43778 * 222.23362 * 12 11 6 15 15 C 1.34234 * 116.99947 * 270.21238 * 14 12 11 16 16 O 1.20830 * 119.99848 * 359.97438 * 15 14 12 17 17 C 1.50694 * 119.99881 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.47168 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47168 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.08992 * 109.47347 * 180.58843 * 1 2 3 28 28 H 1.09008 * 109.47229 * 300.58726 * 1 2 3 29 29 H 1.08997 * 109.46916 * 60.58396 * 1 2 3 30 30 H 1.08996 * 109.68484 * 174.66860 * 4 2 1 31 31 H 1.08999 * 109.68626 * 295.19437 * 4 2 1 32 32 H 1.08007 * 119.89388 * 359.84013 * 7 6 5 33 33 H 1.08001 * 120.02377 * 179.97438 * 8 7 6 34 34 H 1.08005 * 120.00988 * 180.02562 * 9 8 7 35 35 H 1.08000 * 119.84053 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47054 * 60.00063 * 17 15 14 37 37 H 1.08998 * 109.47224 * 299.99551 * 17 15 14 38 38 H 1.09007 * 109.46922 * 59.99702 * 18 17 15 39 39 H 1.09003 * 109.46836 * 300.00457 * 18 17 15 40 40 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8980 1.0260 0.0000 4 6 2.0471 -0.7348 1.2435 5 8 1.4659 -2.0393 1.2697 6 6 1.5227 -2.7825 0.1340 7 6 1.2997 -4.1529 0.2255 8 6 1.3451 -4.9409 -0.9061 9 6 1.6125 -4.3682 -2.1361 10 6 1.8355 -3.0085 -2.2305 11 6 1.7932 -2.2128 -1.0977 12 6 2.0459 -0.7333 -1.2406 13 1 3.1164 -0.5575 -1.3468 14 8 1.3555 -0.2366 -2.4175 15 6 2.0319 -0.2618 -3.5767 16 8 3.1634 -0.6844 -3.6069 17 6 1.3802 0.2381 -4.8402 18 6 2.3592 0.1004 -6.0079 19 6 1.7074 0.5997 -7.2715 20 1 0.6961 0.9779 -7.2444 21 6 2.4020 0.5738 -8.4622 22 7 3.6337 0.1137 -8.4951 23 14 1.5937 1.1920 -10.0287 24 1 2.5440 1.0585 -11.1620 25 1 0.3752 0.3902 -10.3067 26 1 1.2197 2.6195 -9.8625 27 1 -0.3633 -1.0275 0.0106 28 1 -0.3634 0.5230 0.8847 29 1 -0.3633 0.5047 -0.8952 30 1 3.1329 -0.8175 1.1961 31 1 1.7595 -0.1861 2.1403 32 1 1.0899 -4.6012 1.1855 33 1 1.1719 -6.0043 -0.8313 34 1 1.6478 -4.9842 -3.0225 35 1 2.0445 -2.5638 -3.1922 36 1 1.1065 1.2860 -4.7177 37 1 0.4854 -0.3498 -5.0446 38 1 2.6335 -0.9475 -6.1304 39 1 3.2539 0.6885 -5.8031 40 1 4.1222 0.0952 -9.3329 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117663825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -111.783638 kcal Electronic energy + Delta-G solvation = -23234.257144 eV Core-core repulsion = 19785.846697 eV Total energy + Delta-G solvation = -3448.410446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32322 -39.74465 -37.67727 -36.52498 -34.11193 -33.61394 -31.34911 -30.98980 -30.34573 -27.29372 -26.53305 -25.26294 -23.04798 -22.62501 -22.06420 -19.94894 -19.30442 -18.02737 -17.38818 -17.08377 -16.49333 -16.18155 -15.74170 -15.38837 -15.07994 -14.50319 -14.32962 -14.07506 -13.87323 -13.50730 -13.02624 -12.95021 -12.53360 -12.49237 -12.28379 -12.04332 -11.67068 -11.40442 -11.34441 -11.21092 -10.96583 -10.93664 -10.79122 -10.66666 -10.24779 -10.08472 -9.96214 -9.58896 -9.22348 -8.88804 -8.39920 -8.25173 -6.03900 -4.09045 1.18970 1.37600 2.72310 2.93969 3.14942 3.31341 3.36181 3.38202 3.75719 4.28679 4.39082 4.42107 4.53870 4.70850 4.76876 5.00970 5.15289 5.17580 5.26217 5.31555 5.33514 5.38152 5.45070 5.59723 5.65972 5.73651 5.89400 5.96974 6.06830 6.14075 6.20134 6.21588 6.41394 6.52007 6.60004 6.69028 6.87918 7.28783 7.62711 7.69115 7.94726 8.19823 8.35503 8.97647 9.55210 11.06997 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.003692 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.944142 B = 7582.770446 C = 8229.340452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 H 0.098 0.902 4 C 0.069 3.931 5 O -0.313 6.313 6 C 0.141 3.859 7 C -0.156 4.156 8 C -0.083 4.083 9 C -0.151 4.151 10 C -0.066 4.066 11 C -0.176 4.176 12 C 0.136 3.864 13 H 0.095 0.905 14 O -0.348 6.348 15 C 0.453 3.547 16 O -0.501 6.501 17 C -0.104 4.104 18 C 0.034 3.966 19 C -0.530 4.530 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.896 3.104 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -4.507 20.254 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 H 0.116 0.884 4 C -0.006 4.006 5 O -0.227 6.227 6 C 0.096 3.904 7 C -0.175 4.175 8 C -0.101 4.101 9 C -0.170 4.170 10 C -0.084 4.084 11 C -0.177 4.177 12 C 0.080 3.920 13 H 0.112 0.888 14 O -0.265 6.265 15 C 0.297 3.703 16 O -0.388 6.388 17 C -0.142 4.142 18 C -0.003 4.003 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.723 3.277 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.035 -4.719 20.333 21.472 hybrid contribution -0.057 0.426 -1.099 1.180 sum -5.092 -4.294 19.234 20.354 Atomic orbital electron populations 1.21660 0.92742 1.02820 1.02397 1.21906 0.99004 1.00576 0.93039 0.88362 1.23033 0.97660 0.81234 0.98700 1.85961 1.75702 1.28229 1.32839 1.18594 0.96657 0.90649 0.84494 1.20527 1.06881 0.90345 0.99738 1.20960 0.97674 0.99579 0.91870 1.21090 1.02913 0.94915 0.98047 1.21167 0.95223 0.93756 0.98224 1.20013 1.08502 0.95770 0.93412 1.21209 0.97801 0.88937 0.84030 0.88755 1.86701 1.46742 1.76314 1.16785 1.24885 0.85462 0.74770 0.85176 1.90648 1.19359 1.42958 1.85803 1.21798 1.01772 1.02041 0.88540 1.19010 0.93388 0.98624 0.89262 1.21109 1.00212 1.42799 0.92708 0.92365 1.25012 0.94837 0.95226 0.99140 1.69981 1.10191 1.45714 1.26862 0.86605 0.79138 0.79388 0.82555 1.21231 1.20136 1.20155 0.92163 0.92453 0.90974 0.91472 0.86683 0.85224 0.85350 0.85543 0.85371 0.88893 0.88907 0.95605 0.95592 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.63 37.16 0.32 -1.19 16 2 C -0.13 -1.37 3.10 -90.37 -0.28 -1.65 16 3 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.07 0.64 6.54 37.37 0.24 0.88 16 5 O -0.31 -3.70 9.61 -19.27 -0.19 -3.89 16 6 C 0.14 1.87 5.66 -39.20 -0.22 1.65 16 7 C -0.16 -1.85 9.94 -39.35 -0.39 -2.24 16 8 C -0.08 -0.94 10.04 -39.66 -0.40 -1.34 16 9 C -0.15 -2.02 10.04 -39.61 -0.40 -2.42 16 10 C -0.07 -1.04 9.12 -39.53 -0.36 -1.40 16 11 C -0.18 -2.61 5.18 -104.44 -0.54 -3.15 16 12 C 0.14 1.96 2.38 -27.81 -0.07 1.89 16 13 H 0.09 1.46 7.16 -51.93 -0.37 1.08 16 14 O -0.35 -5.71 8.54 -39.27 -0.34 -6.05 16 15 C 0.45 8.72 6.39 36.00 0.23 8.95 16 16 O -0.50 -11.01 13.93 -18.75 -0.26 -11.27 16 17 C -0.10 -2.09 5.75 -27.89 -0.16 -2.25 16 18 C 0.03 0.89 4.26 -27.89 -0.12 0.77 16 19 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 23 Si 0.90 21.30 29.54 -169.99 -5.02 16.27 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.06 0.74 6.53 -51.93 -0.34 0.40 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.85 7.44 -51.93 -0.39 0.46 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 35 H 0.13 2.31 5.15 -52.49 -0.27 2.04 16 36 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.03 0.72 8.10 -51.92 -0.42 0.30 16 39 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -32.07 329.38 -8.21 -40.28 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.55 Total: 0.60 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.55 Total: -14.87 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.78 Total: -21.20 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.07 -8.21 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117663825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.507 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds