Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.73169 * 2 1 4 4 C 1.53416 * 109.69746 * 120.57949 * 2 1 3 5 5 O 1.42834 * 108.37078 * 54.95071 * 4 2 1 6 6 C 1.35850 * 117.85885 * 49.15131 * 5 4 2 7 7 C 1.39142 * 118.49710 * 162.97889 * 6 5 4 8 8 C 1.37965 * 120.21695 * 179.81506 * 7 6 5 9 9 C 1.38289 * 119.95731 * 359.97438 * 8 7 6 10 10 C 1.38105 * 119.98300 * 0.08118 * 9 8 7 11 11 C 1.38372 * 121.80633 * 342.92040 * 6 5 4 12 12 C 1.50772 * 121.41304 * 0.29550 * 11 6 5 13 13 H 1.09002 * 109.39615 * 102.33765 * 12 11 6 14 14 O 1.45199 * 109.43778 * 222.23362 * 12 11 6 15 15 C 1.34234 * 116.99947 * 270.21238 * 14 12 11 16 16 O 1.20830 * 119.99848 * 359.97438 * 15 14 12 17 17 C 1.50694 * 119.99881 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.47168 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47168 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.08992 * 109.47347 * 180.58843 * 1 2 3 28 28 H 1.09008 * 109.47229 * 300.58726 * 1 2 3 29 29 H 1.08997 * 109.46916 * 60.58396 * 1 2 3 30 30 H 1.08996 * 109.68484 * 174.66860 * 4 2 1 31 31 H 1.08999 * 109.68626 * 295.19437 * 4 2 1 32 32 H 1.08007 * 119.89388 * 359.84013 * 7 6 5 33 33 H 1.08001 * 120.02377 * 179.97438 * 8 7 6 34 34 H 1.08005 * 120.00988 * 180.02562 * 9 8 7 35 35 H 1.08000 * 119.84053 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47054 * 60.00063 * 17 15 14 37 37 H 1.08998 * 109.47224 * 299.99551 * 17 15 14 38 38 H 1.09007 * 109.46922 * 59.99702 * 18 17 15 39 39 H 1.09003 * 109.46836 * 300.00457 * 18 17 15 40 40 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8980 1.0260 0.0000 4 6 2.0471 -0.7348 1.2435 5 8 1.4659 -2.0393 1.2697 6 6 1.5227 -2.7825 0.1340 7 6 1.2997 -4.1529 0.2255 8 6 1.3451 -4.9409 -0.9061 9 6 1.6125 -4.3682 -2.1361 10 6 1.8355 -3.0085 -2.2305 11 6 1.7932 -2.2128 -1.0977 12 6 2.0459 -0.7333 -1.2406 13 1 3.1164 -0.5575 -1.3468 14 8 1.3555 -0.2366 -2.4175 15 6 2.0319 -0.2618 -3.5767 16 8 3.1634 -0.6844 -3.6069 17 6 1.3802 0.2381 -4.8402 18 6 2.3592 0.1004 -6.0079 19 6 1.7074 0.5997 -7.2715 20 1 0.6961 0.9779 -7.2444 21 6 2.4020 0.5738 -8.4622 22 7 3.6337 0.1137 -8.4951 23 14 1.5937 1.1920 -10.0287 24 1 2.5440 1.0585 -11.1620 25 1 0.3752 0.3902 -10.3067 26 1 1.2197 2.6195 -9.8625 27 1 -0.3633 -1.0275 0.0106 28 1 -0.3634 0.5230 0.8847 29 1 -0.3633 0.5047 -0.8952 30 1 3.1329 -0.8175 1.1961 31 1 1.7595 -0.1861 2.1403 32 1 1.0899 -4.6012 1.1855 33 1 1.1719 -6.0043 -0.8313 34 1 1.6478 -4.9842 -3.0225 35 1 2.0445 -2.5638 -3.1922 36 1 1.1065 1.2860 -4.7177 37 1 0.4854 -0.3498 -5.0446 38 1 2.6335 -0.9475 -6.1304 39 1 3.2539 0.6885 -5.8031 40 1 4.1222 0.0952 -9.3329 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117663825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -129.637673 kcal Electronic energy + Delta-G solvation = -23235.031353 eV Core-core repulsion = 19785.846697 eV Total energy + Delta-G solvation = -3449.184656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.43782 -41.08546 -38.62677 -37.92620 -35.67909 -35.17389 -33.16729 -32.14339 -31.33989 -28.44925 -28.00605 -26.59207 -24.24025 -23.94571 -23.39952 -21.59041 -20.29596 -19.27844 -18.90326 -18.20730 -18.01945 -17.45256 -16.99635 -16.75038 -16.49848 -16.11207 -15.46245 -15.10616 -14.94665 -14.83345 -14.35143 -14.26573 -14.14460 -13.75836 -13.40525 -13.29472 -13.00454 -12.84986 -12.77008 -12.56617 -12.39055 -12.30819 -12.02881 -11.84407 -11.79402 -11.75164 -11.45845 -11.33733 -11.26887 -10.58713 -9.92965 -9.24201 -8.21596 -6.35776 0.16153 0.34548 1.16380 1.42053 1.46338 1.53781 1.64083 2.26055 2.41925 2.71772 3.12178 3.34806 3.39954 3.56130 3.62143 3.85468 4.07746 4.12152 4.19234 4.32166 4.38593 4.39026 4.43636 4.47083 4.54785 4.58692 4.71034 4.86093 4.92120 4.93840 5.04465 5.20959 5.29447 5.37147 5.39274 5.44120 5.50523 5.51365 5.73229 5.77759 6.10739 6.35087 6.73146 6.82777 7.34647 8.90786 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.003692 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.944142 B = 7582.770446 C = 8229.340452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 H 0.117 0.883 4 C 0.066 3.934 5 O -0.314 6.314 6 C 0.139 3.861 7 C -0.155 4.155 8 C -0.072 4.072 9 C -0.163 4.163 10 C -0.097 4.097 11 C -0.195 4.195 12 C 0.128 3.872 13 H 0.076 0.924 14 O -0.338 6.338 15 C 0.463 3.537 16 O -0.536 6.536 17 C -0.095 4.095 18 C 0.042 3.958 19 C -0.547 4.547 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.263 1.263 26 H -0.262 1.262 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.111 0.889 38 H -0.011 1.011 39 H -0.010 1.010 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.543 -4.319 22.111 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.008 4.008 5 O -0.228 6.228 6 C 0.093 3.907 7 C -0.173 4.173 8 C -0.090 4.090 9 C -0.181 4.181 10 C -0.116 4.116 11 C -0.196 4.196 12 C 0.073 3.927 13 H 0.094 0.906 14 O -0.255 6.255 15 C 0.308 3.692 16 O -0.426 6.426 17 C -0.132 4.132 18 C 0.005 3.995 19 C -0.584 4.584 20 H 0.095 0.905 21 C -0.200 4.200 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.212 1.212 25 H -0.188 1.188 26 H -0.187 1.187 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.172 0.828 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.153 0.847 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.007 0.993 39 H 0.009 0.991 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.142 -4.519 22.221 23.775 hybrid contribution 0.613 0.313 -1.565 1.709 sum -6.530 -4.205 20.657 22.069 Atomic orbital electron populations 1.21627 0.92494 1.01966 1.03124 1.22011 0.99125 1.01298 0.91665 0.86503 1.23343 0.98022 0.80217 0.99215 1.85964 1.75767 1.29149 1.31881 1.18751 0.96166 0.91536 0.84225 1.20956 1.05487 0.89817 1.01080 1.21344 0.95714 1.01326 0.90604 1.21292 1.03075 0.94045 0.99668 1.21087 0.97808 0.95269 0.97389 1.20058 1.09798 0.95698 0.94022 1.21545 0.96945 0.89908 0.84304 0.90563 1.86647 1.46295 1.75919 1.16663 1.24549 0.84773 0.73963 0.85907 1.90636 1.20963 1.44546 1.86440 1.21536 1.00571 1.03958 0.87132 1.18765 0.93514 0.95501 0.91765 1.21599 1.01038 1.42467 0.93331 0.90543 1.26082 0.95314 0.95246 1.03322 1.70153 1.12129 1.47245 1.27933 0.85376 0.78175 0.79376 0.77363 1.21222 1.18769 1.18683 0.93787 0.89627 0.92288 0.90942 0.82814 0.82418 0.81706 0.84745 0.88719 0.86533 0.87049 0.99278 0.99113 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.63 71.98 0.62 -2.04 16 2 C -0.12 -2.45 3.10 -10.63 -0.03 -2.48 16 3 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.07 1.05 6.54 72.12 0.47 1.52 16 5 O -0.31 -6.62 9.61 -91.86 -0.88 -7.51 16 6 C 0.14 3.50 5.66 22.52 0.13 3.62 16 7 C -0.16 -3.30 9.94 22.42 0.22 -3.07 16 8 C -0.07 -1.50 10.04 22.22 0.22 -1.27 16 9 C -0.16 -4.38 10.04 22.25 0.22 -4.16 16 10 C -0.10 -3.24 9.12 22.30 0.20 -3.04 16 11 C -0.19 -5.87 5.18 -19.75 -0.10 -5.97 16 12 C 0.13 3.76 2.38 29.89 0.07 3.84 16 13 H 0.08 2.49 7.16 -2.39 -0.02 2.47 16 14 O -0.34 -11.42 8.54 -51.46 -0.44 -11.86 16 15 C 0.46 18.72 6.39 71.23 0.46 19.17 16 16 O -0.54 -25.38 13.93 21.95 0.31 -25.07 16 17 C -0.09 -3.91 5.75 29.85 0.17 -3.74 16 18 C 0.04 2.29 4.26 29.85 0.13 2.41 16 19 C -0.55 -30.72 9.11 25.60 0.23 -30.48 16 20 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 21 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 22 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 23 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 27 H 0.04 1.01 6.53 -2.39 -0.02 1.00 16 28 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 1.31 7.44 -2.39 -0.02 1.29 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.09 3.74 5.15 -2.91 -0.01 3.73 16 36 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 37 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 38 H -0.01 -0.69 8.10 -2.38 -0.02 -0.70 16 39 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 40 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -73.45 329.38 5.81 -67.64 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.04 Total: 14.32 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 3.48 Total: -25.32 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.28 Total: -58.00 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.02 Total: -44.43 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.45 5.81 -67.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117663825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.995 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds