Wall clock time and date at job start Tue Mar 31 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42890 * 114.00355 * 2 1 4 4 C 1.53001 * 109.47417 * 175.03671 * 3 2 1 5 5 N 1.46898 * 109.47137 * 67.56332 * 4 3 2 6 6 C 1.46902 * 110.99858 * 287.33996 * 5 4 3 7 7 C 1.50701 * 109.46866 * 303.83770 * 6 5 4 8 8 H 1.07999 * 120.00218 * 3.80316 * 7 6 5 9 9 C 1.37883 * 119.99806 * 183.80355 * 7 6 5 10 10 N 1.31515 * 119.99825 * 5.06961 * 9 7 6 11 11 Si 1.86801 * 119.99916 * 185.06795 * 9 7 6 12 12 H 1.48492 * 109.46978 * 65.00333 * 11 9 7 13 13 H 1.48501 * 109.46751 * 185.00206 * 11 9 7 14 14 H 1.48504 * 109.47085 * 304.99889 * 11 9 7 15 15 C 1.38577 * 111.00237 * 163.38661 * 5 4 3 16 16 N 1.31224 * 126.47106 * 15.41044 * 15 5 4 17 17 N 1.28526 * 109.85910 * 179.97438 * 16 15 5 18 18 C 1.30297 * 110.05654 * 0.02562 * 17 16 15 19 19 C 1.50694 * 126.34887 * 180.02562 * 18 17 16 20 20 F 1.39908 * 109.47371 * 119.97420 * 19 18 17 21 21 F 1.39898 * 109.47125 * 239.97204 * 19 18 17 22 22 N 1.36447 * 126.47528 * 195.09965 * 15 5 4 23 23 C 1.46504 * 127.13622 * 0.03570 * 22 15 5 24 24 H 1.08996 * 109.47404 * 184.95076 * 1 2 3 25 25 H 1.09001 * 109.46637 * 304.94644 * 1 2 3 26 26 H 1.08997 * 109.47266 * 64.94928 * 1 2 3 27 27 H 1.09007 * 109.47020 * 295.03482 * 3 2 1 28 28 H 1.09005 * 109.47221 * 55.03142 * 3 2 1 29 29 H 1.09001 * 109.47182 * 187.56075 * 4 3 2 30 30 H 1.09002 * 109.46999 * 307.56023 * 4 3 2 31 31 H 1.08999 * 109.46850 * 63.83861 * 6 5 4 32 32 H 1.09004 * 109.47150 * 183.83787 * 6 5 4 33 33 H 0.97006 * 119.99645 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.47252 * 359.97134 * 19 18 17 35 35 H 1.08999 * 109.47182 * 95.22919 * 23 22 15 36 36 H 1.09003 * 109.46948 * 215.22089 * 23 22 15 37 37 H 1.08998 * 109.47212 * 335.22545 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5306 1.1867 0.1248 5 7 4.0759 0.5770 -1.0953 6 6 3.7578 -0.8559 -1.1553 7 6 4.2714 -1.5368 0.0871 8 1 4.7281 -0.9536 0.8730 9 6 4.1582 -2.9045 0.2205 10 7 3.6940 -3.6262 -0.7762 11 14 4.6643 -3.7324 1.8167 12 1 3.7679 -3.2843 2.9125 13 1 4.5615 -5.2059 1.6643 14 1 6.0659 -3.3650 2.1421 15 6 5.4427 0.7865 -1.1871 16 7 6.2386 1.1771 -0.2196 17 7 7.4442 1.2678 -0.6559 18 6 7.4886 0.9438 -1.9171 19 6 8.7160 0.9226 -2.7912 20 9 8.9140 -0.3711 -3.2858 21 9 8.5429 1.8089 -3.8597 22 7 6.2160 0.6200 -2.2988 23 6 5.7740 0.1878 -3.6271 24 1 -0.3634 -1.0238 0.0887 25 1 -0.3632 0.5887 0.8424 26 1 -0.3634 0.4351 -0.9310 27 1 1.7608 1.8142 -0.9312 28 1 1.6200 1.8769 0.8422 29 1 3.9625 2.1783 0.2598 30 1 3.7770 0.5630 0.9841 31 1 2.6776 -0.9858 -1.2207 32 1 4.2306 -1.2966 -2.0331 33 1 3.6148 -4.5885 -0.6825 34 1 9.5843 1.2247 -2.2056 35 1 5.5859 1.0624 -4.2498 36 1 6.5496 -0.4251 -4.0864 37 1 4.8580 -0.3953 -3.5332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121296417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:34 Heat of formation + Delta-G solvation = -44.869493 kcal Electronic energy + Delta-G solvation = -24488.688366 eV Core-core repulsion = 20553.535507 eV Total energy + Delta-G solvation = -3935.152859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.09824 -47.09802 -42.50117 -38.01569 -36.24961 -34.53131 -32.57947 -30.83734 -29.21974 -27.66581 -26.66973 -25.85200 -25.49115 -22.95612 -22.16798 -20.85005 -19.97138 -17.50029 -17.42718 -17.29295 -16.81781 -16.22265 -15.96303 -15.63293 -15.52522 -14.89059 -14.44027 -14.24543 -13.98575 -13.61777 -13.46216 -13.21118 -12.96782 -12.83919 -12.48663 -11.89795 -11.73508 -11.65501 -11.22687 -11.16039 -11.07080 -11.00912 -10.77968 -10.50072 -10.06641 -10.02890 -9.89363 -9.67440 -9.10599 -8.95909 -8.40095 -7.61148 -6.07372 -4.10651 2.02724 2.58058 3.23658 3.33281 3.35729 3.41858 3.47511 4.04043 4.32943 4.43559 4.50103 4.59838 4.92484 5.03554 5.28279 5.38102 5.47825 5.59008 5.66229 5.70882 5.71797 5.78412 5.79947 5.92649 6.06272 6.15621 6.40809 6.66834 6.75106 7.14531 7.46635 7.48295 7.72947 7.87750 8.03056 8.15224 8.92088 9.11292 9.54188 11.00573 Molecular weight = 290.13amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.006370 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.307020 B = 4394.806195 C = 5408.051901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.070 3.930 4 C 0.070 3.930 5 N -0.465 5.465 6 C 0.187 3.813 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.071 3.929 10 N -0.892 5.892 11 Si 0.890 3.110 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.429 3.571 16 N -0.327 5.327 17 N -0.244 5.244 18 C 0.062 3.938 19 C 0.374 3.626 20 F -0.191 7.191 21 F -0.195 7.195 22 N -0.460 5.460 23 C 0.076 3.924 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 9.421 -5.313 10.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.008 4.008 4 C -0.057 4.057 5 N -0.189 5.189 6 C 0.064 3.936 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.132 4.132 10 N -0.531 5.531 11 Si 0.718 3.282 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.074 3.926 16 N -0.174 5.174 17 N -0.087 5.087 18 C -0.205 4.205 19 C 0.318 3.682 20 F -0.173 7.173 21 F -0.176 7.176 22 N -0.154 5.154 23 C -0.067 4.067 24 H 0.099 0.901 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.427 9.680 -4.499 10.770 hybrid contribution -0.188 -1.286 -0.028 1.300 sum 1.239 8.394 -4.527 9.617 Atomic orbital electron populations 1.22671 0.83015 1.02256 0.98747 1.88327 1.17795 1.26296 1.94870 1.22481 0.93386 0.85524 0.99370 1.22046 0.92079 0.99448 0.92120 1.59536 1.01285 1.20240 1.37860 1.20284 0.99820 0.76244 0.97207 1.21534 1.39746 0.92723 1.03928 0.91788 1.24817 0.94842 0.97173 0.96335 1.69920 1.46173 1.06263 1.30703 0.86674 0.79237 0.78072 0.84245 1.20066 1.21336 1.20247 1.22813 0.91510 0.96041 0.82281 1.74694 0.95426 1.25299 1.21986 1.73764 1.14584 1.15160 1.05175 1.24584 0.86887 1.13010 0.96045 1.19332 0.94050 0.73366 0.81460 1.93049 1.95789 1.39370 1.89044 1.93024 1.96751 1.68527 1.59305 1.45745 1.06968 1.51107 1.11555 1.22177 1.03281 1.01274 0.79991 0.90060 0.95001 0.94934 0.93458 0.93282 0.90273 0.89876 0.90446 0.95326 0.92833 0.83571 0.90357 0.89734 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.35 -6.80 7.80 -35.23 -0.27 -7.07 16 3 C 0.07 1.15 6.22 37.16 0.23 1.38 16 4 C 0.07 1.35 4.81 -3.82 -0.02 1.33 16 5 N -0.46 -9.76 4.67 -175.88 -0.82 -10.58 16 6 C 0.19 4.56 4.42 -4.97 -0.02 4.54 16 7 C -0.54 -14.73 7.74 -34.44 -0.27 -15.00 16 8 H 0.06 1.81 6.27 -52.49 -0.33 1.49 16 9 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 10 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 11 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.43 9.20 6.18 -318.88 -1.97 7.23 16 16 N -0.33 -7.35 11.28 30.31 0.34 -7.01 16 17 N -0.24 -5.04 12.18 32.99 0.40 -4.64 16 18 C 0.06 1.13 7.50 -154.01 -1.16 -0.03 16 19 C 0.37 5.04 5.52 36.00 0.20 5.23 16 20 F -0.19 -2.79 16.62 2.25 0.04 -2.75 16 21 F -0.19 -2.55 17.32 2.25 0.04 -2.51 16 22 N -0.46 -8.75 3.21 -121.46 -0.39 -9.14 16 23 C 0.08 1.16 10.86 59.85 0.65 1.81 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.08 1.40 7.74 -51.93 -0.40 1.00 16 30 H 0.08 1.84 5.82 -51.93 -0.30 1.53 16 31 H 0.08 1.98 5.65 -51.93 -0.29 1.69 16 32 H 0.03 0.74 6.08 -51.93 -0.32 0.43 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 34 H 0.15 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 37 H 0.10 1.73 6.06 -51.93 -0.31 1.41 16 LS Contribution 317.18 15.07 4.78 4.78 Total: -1.00 -32.32 317.18 -5.94 -38.26 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.43 Total: -1.44 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -1.34 Total: 9.94 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.27 Total: -56.28 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.27 Total: -7.07 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.08 Total: -5.26 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.32 -5.94 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121296417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.614 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds