Wall clock time and date at job start Tue Mar 31 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42890 * 114.00355 * 2 1 4 4 C 1.53001 * 109.47417 * 175.03671 * 3 2 1 5 5 N 1.46898 * 109.47137 * 67.56332 * 4 3 2 6 6 C 1.46902 * 110.99858 * 287.33996 * 5 4 3 7 7 C 1.50701 * 109.46866 * 303.83770 * 6 5 4 8 8 H 1.07999 * 120.00218 * 3.80316 * 7 6 5 9 9 C 1.37883 * 119.99806 * 183.80355 * 7 6 5 10 10 N 1.31515 * 119.99825 * 5.06961 * 9 7 6 11 11 Si 1.86801 * 119.99916 * 185.06795 * 9 7 6 12 12 H 1.48492 * 109.46978 * 65.00333 * 11 9 7 13 13 H 1.48501 * 109.46751 * 185.00206 * 11 9 7 14 14 H 1.48504 * 109.47085 * 304.99889 * 11 9 7 15 15 C 1.38577 * 111.00237 * 163.38661 * 5 4 3 16 16 N 1.31224 * 126.47106 * 15.41044 * 15 5 4 17 17 N 1.28526 * 109.85910 * 179.97438 * 16 15 5 18 18 C 1.30297 * 110.05654 * 0.02562 * 17 16 15 19 19 C 1.50694 * 126.34887 * 180.02562 * 18 17 16 20 20 F 1.39908 * 109.47371 * 119.97420 * 19 18 17 21 21 F 1.39898 * 109.47125 * 239.97204 * 19 18 17 22 22 N 1.36447 * 126.47528 * 195.09965 * 15 5 4 23 23 C 1.46504 * 127.13622 * 0.03570 * 22 15 5 24 24 H 1.08996 * 109.47404 * 184.95076 * 1 2 3 25 25 H 1.09001 * 109.46637 * 304.94644 * 1 2 3 26 26 H 1.08997 * 109.47266 * 64.94928 * 1 2 3 27 27 H 1.09007 * 109.47020 * 295.03482 * 3 2 1 28 28 H 1.09005 * 109.47221 * 55.03142 * 3 2 1 29 29 H 1.09001 * 109.47182 * 187.56075 * 4 3 2 30 30 H 1.09002 * 109.46999 * 307.56023 * 4 3 2 31 31 H 1.08999 * 109.46850 * 63.83861 * 6 5 4 32 32 H 1.09004 * 109.47150 * 183.83787 * 6 5 4 33 33 H 0.97006 * 119.99645 * 179.97438 * 10 9 7 34 34 H 1.09003 * 109.47252 * 359.97134 * 19 18 17 35 35 H 1.08999 * 109.47182 * 95.22919 * 23 22 15 36 36 H 1.09003 * 109.46948 * 215.22089 * 23 22 15 37 37 H 1.08998 * 109.47212 * 335.22545 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5306 1.1867 0.1248 5 7 4.0759 0.5770 -1.0953 6 6 3.7578 -0.8559 -1.1553 7 6 4.2714 -1.5368 0.0871 8 1 4.7281 -0.9536 0.8730 9 6 4.1582 -2.9045 0.2205 10 7 3.6940 -3.6262 -0.7762 11 14 4.6643 -3.7324 1.8167 12 1 3.7679 -3.2843 2.9125 13 1 4.5615 -5.2059 1.6643 14 1 6.0659 -3.3650 2.1421 15 6 5.4427 0.7865 -1.1871 16 7 6.2386 1.1771 -0.2196 17 7 7.4442 1.2678 -0.6559 18 6 7.4886 0.9438 -1.9171 19 6 8.7160 0.9226 -2.7912 20 9 8.9140 -0.3711 -3.2858 21 9 8.5429 1.8089 -3.8597 22 7 6.2160 0.6200 -2.2988 23 6 5.7740 0.1878 -3.6271 24 1 -0.3634 -1.0238 0.0887 25 1 -0.3632 0.5887 0.8424 26 1 -0.3634 0.4351 -0.9310 27 1 1.7608 1.8142 -0.9312 28 1 1.6200 1.8769 0.8422 29 1 3.9625 2.1783 0.2598 30 1 3.7770 0.5630 0.9841 31 1 2.6776 -0.9858 -1.2207 32 1 4.2306 -1.2966 -2.0331 33 1 3.6148 -4.5885 -0.6825 34 1 9.5843 1.2247 -2.2056 35 1 5.5859 1.0624 -4.2498 36 1 6.5496 -0.4251 -4.0864 37 1 4.8580 -0.3953 -3.5332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121296417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:33 Heat of formation + Delta-G solvation = -65.373973 kcal Electronic energy + Delta-G solvation = -24489.577507 eV Core-core repulsion = 20553.535507 eV Total energy + Delta-G solvation = -3936.042000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.20028 -48.19619 -44.04009 -39.51880 -37.75066 -36.00080 -34.66485 -32.26712 -30.75464 -29.24363 -28.16623 -27.17036 -26.98009 -24.68613 -23.74235 -22.23985 -21.56272 -18.97114 -18.66150 -18.55385 -18.41953 -17.65718 -17.47390 -17.14552 -16.90043 -16.63340 -16.05452 -15.60548 -15.25773 -15.02759 -14.76577 -14.55544 -14.28643 -14.23206 -13.98797 -13.47820 -13.31640 -13.01610 -12.90349 -12.73801 -12.67159 -12.58891 -12.37969 -12.18938 -12.04076 -11.70933 -11.53673 -11.18317 -10.67701 -10.62298 -10.30616 -9.33185 -8.20119 -6.28460 0.52936 1.17927 1.33490 1.33968 1.41805 1.63450 2.23186 2.37010 2.93692 2.97011 3.08360 3.13854 3.48971 3.74261 3.81988 4.02851 4.19244 4.23685 4.30225 4.44807 4.49282 4.50998 4.63029 4.66930 4.71970 4.91454 4.94838 5.08349 5.11002 5.40452 5.53782 5.71055 5.78075 6.08987 6.30918 6.52697 6.80758 7.37642 7.54271 8.86066 Molecular weight = 290.13amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.006370 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.307020 B = 4394.806195 C = 5408.051901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.074 3.926 4 C 0.072 3.928 5 N -0.455 5.455 6 C 0.207 3.793 7 C -0.541 4.541 8 H 0.048 0.952 9 C 0.025 3.975 10 N -0.917 5.917 11 Si 0.941 3.059 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.285 1.285 15 C 0.405 3.595 16 N -0.354 5.354 17 N -0.270 5.270 18 C 0.074 3.926 19 C 0.382 3.618 20 F -0.196 7.196 21 F -0.188 7.188 22 N -0.465 5.465 23 C 0.072 3.928 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.010 0.990 33 H 0.263 0.737 34 H 0.190 0.810 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 10.288 -5.816 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.002 4.002 4 C -0.055 4.055 5 N -0.179 5.179 6 C 0.083 3.917 7 C -0.580 4.580 8 H 0.066 0.934 9 C -0.175 4.175 10 N -0.557 5.557 11 Si 0.768 3.232 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.211 1.211 15 C 0.049 3.951 16 N -0.200 5.200 17 N -0.112 5.112 18 C -0.195 4.195 19 C 0.326 3.674 20 F -0.177 7.177 21 F -0.170 7.170 22 N -0.158 5.158 23 C -0.069 4.069 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.207 0.793 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.782 10.563 -5.008 11.824 hybrid contribution -0.260 -1.496 0.081 1.521 sum 1.521 9.067 -4.927 10.430 Atomic orbital electron populations 1.22812 0.80838 1.02618 1.00643 1.88237 1.20344 1.27925 1.95242 1.22524 0.91223 0.85084 1.01412 1.22096 0.94337 0.99042 0.90074 1.59516 1.01500 1.18151 1.38705 1.19860 0.98631 0.78087 0.95094 1.21699 1.39011 0.92847 1.04427 0.93405 1.25464 0.95285 0.97897 0.98830 1.69997 1.47283 1.06424 1.31950 0.85871 0.78337 0.77644 0.81385 1.19457 1.20356 1.21062 1.22951 0.91723 0.97328 0.83142 1.74592 0.96321 1.26001 1.23105 1.73682 1.13975 1.16994 1.06596 1.25584 0.87848 1.10127 0.95932 1.19738 0.93088 0.73206 0.81392 1.93045 1.95593 1.39997 1.89066 1.93039 1.96677 1.68245 1.58995 1.46093 1.07117 1.50416 1.12170 1.22391 1.03022 1.02692 0.78821 0.90657 0.92680 0.93255 0.91912 0.90305 0.88975 0.93283 0.91517 0.97161 0.92755 0.79338 0.87306 0.88323 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -15.11 7.80 -148.98 -1.16 -16.27 16 3 C 0.07 2.36 6.22 71.98 0.45 2.81 16 4 C 0.07 2.76 4.81 86.30 0.42 3.18 16 5 N -0.45 -19.24 4.67 -710.35 -3.32 -22.56 16 6 C 0.21 10.31 4.42 85.56 0.38 10.69 16 7 C -0.54 -30.08 7.74 25.60 0.20 -29.88 16 8 H 0.05 2.79 6.27 -2.91 -0.02 2.77 16 9 C 0.03 1.42 5.45 84.66 0.46 1.89 16 10 N -0.92 -53.28 13.29 21.45 0.29 -52.99 16 11 Si 0.94 45.76 29.54 68.60 2.03 47.78 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 15 C 0.41 17.42 6.18 260.11 1.61 19.02 16 16 N -0.35 -15.99 11.28 -58.01 -0.65 -16.65 16 17 N -0.27 -11.02 12.18 -49.54 -0.60 -11.62 16 18 C 0.07 2.58 7.50 137.63 1.03 3.61 16 19 C 0.38 9.20 5.52 71.23 0.39 9.59 16 20 F -0.20 -5.22 16.62 44.97 0.75 -4.47 16 21 F -0.19 -4.34 17.32 44.97 0.78 -3.56 16 22 N -0.46 -17.29 3.21 -538.18 -1.73 -19.02 16 23 C 0.07 2.12 10.86 127.77 1.39 3.50 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 25 H 0.05 1.25 8.12 -2.39 -0.02 1.23 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.08 2.01 8.12 -2.38 -0.02 1.99 16 29 H 0.09 3.25 7.74 -2.39 -0.02 3.23 16 30 H 0.05 2.23 5.82 -2.39 -0.01 2.21 16 31 H 0.07 3.50 5.65 -2.39 -0.01 3.48 16 32 H 0.01 0.55 6.08 -2.38 -0.01 0.54 16 33 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 34 H 0.19 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.10 2.59 7.37 -2.39 -0.02 2.58 16 37 H 0.09 2.95 6.06 -2.39 -0.01 2.94 16 Total: -1.00 -70.34 317.18 5.05 -65.30 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.10 Total: 7.64 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 7.57 Total: 26.42 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -6.02 Total: -122.84 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.16 Total: -16.27 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 1.53 Total: -8.04 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.34 5.05 -65.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121296417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.077 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds