Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47442 * 2 1 4 4 H 1.08996 * 109.47142 * 306.03070 * 3 2 1 5 5 C 1.50702 * 109.47370 * 186.02138 * 3 2 1 6 6 H 1.07994 * 120.00569 * 245.53465 * 5 3 2 7 7 C 1.37879 * 119.99591 * 65.53689 * 5 3 2 8 8 N 1.31512 * 120.00246 * 196.57581 * 7 5 3 9 9 Si 1.86805 * 120.00142 * 16.57071 * 7 5 3 10 10 H 1.48500 * 109.47202 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.47139 * 300.00259 * 9 7 5 12 12 H 1.48497 * 109.47164 * 60.00057 * 9 7 5 13 13 O 1.45201 * 109.46700 * 66.02456 * 3 2 1 14 14 C 1.34685 * 117.00373 * 270.00278 * 13 3 2 15 15 O 1.21431 * 119.99637 * 359.97438 * 14 13 3 16 16 C 1.47960 * 120.00143 * 180.02562 * 14 13 3 17 17 C 1.39638 * 119.97819 * 359.72061 * 16 14 13 18 18 C 1.37749 * 120.02368 * 179.76608 * 17 16 14 19 19 C 1.39826 * 119.97553 * 0.51039 * 18 17 16 20 20 C 1.47412 * 120.02251 * 179.72009 * 19 18 17 21 21 C 1.50698 * 119.99951 * 5.58967 * 20 19 18 22 22 O 1.21217 * 119.99744 * 185.59055 * 20 19 18 23 23 C 1.39790 * 119.95471 * 359.74447 * 19 18 17 24 24 C 1.50695 * 120.00689 * 179.97438 * 23 19 18 25 25 C 1.37786 * 119.97573 * 359.97438 * 23 19 18 26 26 H 1.09002 * 109.47067 * 299.99501 * 1 2 3 27 27 H 1.09002 * 109.47123 * 59.99672 * 1 2 3 28 28 H 1.08995 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47067 * 240.00499 * 2 1 3 30 30 H 1.08997 * 109.47298 * 120.00773 * 2 1 3 31 31 H 0.97002 * 119.99551 * 354.94157 * 8 7 5 32 32 H 1.07998 * 119.98766 * 359.97438 * 17 16 14 33 33 H 1.08001 * 120.01068 * 180.24958 * 18 17 16 34 34 H 1.09008 * 109.47213 * 5.06074 * 21 20 19 35 35 H 1.08994 * 109.47399 * 125.05413 * 21 20 19 36 36 H 1.08997 * 109.47267 * 245.05900 * 21 20 19 37 37 H 1.09003 * 109.47090 * 276.13518 * 24 23 19 38 38 H 1.08997 * 109.47398 * 36.14245 * 24 23 19 39 39 H 1.09004 * 109.46771 * 156.14264 * 24 23 19 40 40 H 1.07996 * 119.98895 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5913 1.9865 -0.8310 5 6 3.5397 1.4451 -0.1490 6 1 4.1620 1.8033 0.6576 7 6 4.1172 0.9901 -1.3154 8 7 5.3958 0.6829 -1.3399 9 14 3.0837 0.8098 -2.8610 10 1 3.9342 0.3059 -3.9692 11 1 1.9796 -0.1508 -2.6090 12 1 2.5156 2.1302 -3.2334 13 8 1.6769 2.0841 1.2509 14 6 0.4902 2.7199 1.2901 15 8 -0.2215 2.7382 0.3064 16 6 0.0543 3.3969 2.5314 17 6 0.8709 3.3715 3.6638 18 6 0.4682 4.0056 4.8184 19 6 -0.7637 4.6658 4.8596 20 6 -1.1985 5.3394 6.0966 21 6 -0.2642 5.4257 7.2759 22 8 -2.3075 5.8239 6.1652 23 6 -1.5829 4.6861 3.7271 24 6 -2.9111 5.3968 3.7704 25 6 -1.1756 4.0562 2.5714 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9485 0.8453 -0.5595 32 1 1.8202 2.8574 3.6332 33 1 1.1018 3.9892 5.6929 34 1 0.7085 5.0188 6.9994 35 1 -0.1505 6.4679 7.5739 36 1 -0.6747 4.8528 8.1073 37 1 -3.6642 4.7338 4.1964 38 1 -2.8244 6.2917 4.3865 39 1 -3.2053 5.6787 2.7594 40 1 -1.8081 4.0721 1.6962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122898062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = -106.359439 kcal Electronic energy + Delta-G solvation = -22782.170346 eV Core-core repulsion = 19333.995111 eV Total energy + Delta-G solvation = -3448.175236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64652 -39.77364 -38.16113 -36.02925 -33.72011 -33.04096 -32.38506 -31.86048 -29.71707 -27.70744 -27.06003 -25.11399 -22.54715 -22.03892 -21.40805 -20.24165 -19.52121 -17.96316 -17.20348 -16.94678 -16.25129 -15.84727 -15.59098 -15.39211 -14.78142 -14.38527 -14.07404 -13.66085 -13.35000 -13.33970 -13.11823 -12.77544 -12.57062 -12.52913 -12.47425 -12.42101 -12.14183 -12.02513 -11.73103 -11.35918 -11.21925 -10.94413 -10.56157 -10.15331 -10.01159 -9.74825 -9.68934 -9.59418 -9.21381 -8.94327 -8.90788 -8.41674 -6.68942 -4.30043 0.14376 1.16240 1.90902 2.91598 3.26883 3.31265 3.36673 3.51868 3.72072 3.74529 4.32457 4.47868 4.60532 4.66705 5.01111 5.04933 5.06680 5.08311 5.11401 5.20867 5.45616 5.52316 5.58943 5.64343 5.73231 5.86792 5.90745 5.98307 6.02445 6.07793 6.22618 6.29234 6.40207 6.59552 6.60529 6.73669 6.76966 7.11602 7.22794 7.28959 7.74101 8.18213 8.36685 8.77278 9.37916 10.74130 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.003677 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.229688 B = 7612.963784 C = 8135.894729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.202 3.798 4 H 0.040 0.960 5 C -0.608 4.608 6 H 0.069 0.931 7 C 0.041 3.959 8 N -0.892 5.892 9 Si 1.035 2.965 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.278 1.278 13 O -0.336 6.336 14 C 0.491 3.509 15 O -0.508 6.508 16 C -0.075 4.075 17 C -0.084 4.084 18 C -0.084 4.084 19 C -0.157 4.157 20 C 0.394 3.606 21 C -0.202 4.202 22 O -0.453 6.453 23 C -0.038 4.038 24 C -0.121 4.121 25 C -0.077 4.077 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.272 0.728 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 6.943 14.068 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.645 4.645 6 H 0.087 0.913 7 C -0.166 4.166 8 N -0.525 5.525 9 Si 0.862 3.138 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.204 1.204 13 O -0.252 6.252 14 C 0.335 3.665 15 O -0.399 6.399 16 C -0.076 4.076 17 C -0.102 4.102 18 C -0.102 4.102 19 C -0.158 4.158 20 C 0.274 3.726 21 C -0.259 4.259 22 O -0.329 6.329 23 C -0.039 4.039 24 C -0.177 4.177 25 C -0.095 4.095 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.458 6.649 12.210 18.668 hybrid contribution 0.185 0.357 1.453 1.508 sum -12.273 7.005 13.663 19.657 Atomic orbital electron populations 1.21912 0.97405 0.99930 1.01467 1.22437 0.93803 0.99272 1.03059 1.20989 0.96647 0.88240 0.79307 0.94281 1.21920 0.88647 1.49705 1.04272 0.91294 1.25656 0.97717 0.92467 1.00741 1.70870 1.06671 1.40422 1.34564 0.84190 0.75616 0.77867 0.76123 1.20387 1.19476 1.20384 1.86581 1.33436 1.62328 1.42811 1.21097 0.81124 0.76950 0.87349 1.90765 1.54563 1.58383 1.36192 1.19663 0.95615 0.99361 0.92979 1.21555 1.00051 0.97276 0.91325 1.21464 0.94720 0.95599 0.98374 1.20540 0.96494 1.03022 0.95745 1.22543 0.87289 0.74947 0.87868 1.22252 1.00849 1.04970 0.97854 1.90482 1.21657 1.38276 1.82518 1.20113 0.96342 0.95543 0.91865 1.21098 0.92585 1.01304 1.02705 1.21204 0.94889 0.95152 0.98298 0.94004 0.92659 0.93955 0.90177 0.91936 0.91798 0.83400 0.84126 0.89566 0.88795 0.88595 0.90533 0.88999 0.91831 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.58 37.16 0.32 -2.62 16 2 C -0.15 -3.31 5.31 -26.73 -0.14 -3.45 16 3 C 0.20 4.98 1.82 -27.88 -0.05 4.93 16 4 H 0.04 1.01 5.84 -51.93 -0.30 0.71 16 5 C -0.61 -16.99 9.17 -34.44 -0.32 -17.31 16 6 H 0.07 2.06 8.06 -52.49 -0.42 1.63 16 7 C 0.04 1.15 5.31 -17.82 -0.09 1.05 16 8 N -0.89 -26.48 13.70 55.43 0.76 -25.72 16 9 Si 1.04 24.61 26.27 -169.99 -4.47 20.14 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -5.88 5.69 56.52 0.32 -5.56 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 O -0.34 -7.55 9.06 -40.45 -0.37 -7.91 16 14 C 0.49 9.79 6.40 34.71 0.22 10.01 16 15 O -0.51 -10.96 13.52 -19.21 -0.26 -11.22 16 16 C -0.07 -1.18 5.88 -104.89 -0.62 -1.80 16 17 C -0.08 -1.12 9.60 -39.24 -0.38 -1.49 16 18 C -0.08 -0.86 9.39 -39.17 -0.37 -1.23 16 19 C -0.16 -1.74 5.87 -104.99 -0.62 -2.36 16 20 C 0.39 3.87 7.17 -30.58 -0.22 3.65 16 21 C -0.20 -1.22 10.17 36.00 0.37 -0.85 16 22 O -0.45 -5.53 14.04 5.61 0.08 -5.45 16 23 C -0.04 -0.47 5.91 -104.21 -0.62 -1.09 16 24 C -0.12 -1.30 8.75 36.00 0.31 -0.98 16 25 C -0.08 -1.08 9.20 -39.24 -0.36 -1.44 16 26 H 0.04 0.81 6.04 -51.93 -0.31 0.49 16 27 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.83 4.77 -51.93 -0.25 1.58 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 32 H 0.15 1.96 7.60 -52.49 -0.40 1.56 16 33 H 0.14 0.96 6.01 -52.49 -0.32 0.64 16 34 H 0.09 0.39 5.69 -51.92 -0.30 0.09 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.03 5.79 -51.93 -0.30 0.73 16 39 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 40 H 0.14 1.95 7.63 -52.49 -0.40 1.55 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -31.66 327.76 -7.04 -38.70 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.17 Total: 1.49 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.56 Total: -14.97 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.76 Total: -25.72 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.55 Total: -24.58 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -4.47 Total: 20.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.66 -7.04 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122898062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.657 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds