Wall clock time and date at job start Tue Mar 31 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47442 * 2 1 4 4 H 1.08996 * 109.47142 * 306.03070 * 3 2 1 5 5 C 1.50702 * 109.47370 * 186.02138 * 3 2 1 6 6 H 1.07994 * 120.00569 * 245.53465 * 5 3 2 7 7 C 1.37879 * 119.99591 * 65.53689 * 5 3 2 8 8 N 1.31512 * 120.00246 * 196.57581 * 7 5 3 9 9 Si 1.86805 * 120.00142 * 16.57071 * 7 5 3 10 10 H 1.48500 * 109.47202 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.47139 * 300.00259 * 9 7 5 12 12 H 1.48497 * 109.47164 * 60.00057 * 9 7 5 13 13 O 1.45201 * 109.46700 * 66.02456 * 3 2 1 14 14 C 1.34685 * 117.00373 * 270.00278 * 13 3 2 15 15 O 1.21431 * 119.99637 * 359.97438 * 14 13 3 16 16 C 1.47960 * 120.00143 * 180.02562 * 14 13 3 17 17 C 1.39638 * 119.97819 * 359.72061 * 16 14 13 18 18 C 1.37749 * 120.02368 * 179.76608 * 17 16 14 19 19 C 1.39826 * 119.97553 * 0.51039 * 18 17 16 20 20 C 1.47412 * 120.02251 * 179.72009 * 19 18 17 21 21 C 1.50698 * 119.99951 * 5.58967 * 20 19 18 22 22 O 1.21217 * 119.99744 * 185.59055 * 20 19 18 23 23 C 1.39790 * 119.95471 * 359.74447 * 19 18 17 24 24 C 1.50695 * 120.00689 * 179.97438 * 23 19 18 25 25 C 1.37786 * 119.97573 * 359.97438 * 23 19 18 26 26 H 1.09002 * 109.47067 * 299.99501 * 1 2 3 27 27 H 1.09002 * 109.47123 * 59.99672 * 1 2 3 28 28 H 1.08995 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47067 * 240.00499 * 2 1 3 30 30 H 1.08997 * 109.47298 * 120.00773 * 2 1 3 31 31 H 0.97002 * 119.99551 * 354.94157 * 8 7 5 32 32 H 1.07998 * 119.98766 * 359.97438 * 17 16 14 33 33 H 1.08001 * 120.01068 * 180.24958 * 18 17 16 34 34 H 1.09008 * 109.47213 * 5.06074 * 21 20 19 35 35 H 1.08994 * 109.47399 * 125.05413 * 21 20 19 36 36 H 1.08997 * 109.47267 * 245.05900 * 21 20 19 37 37 H 1.09003 * 109.47090 * 276.13518 * 24 23 19 38 38 H 1.08997 * 109.47398 * 36.14245 * 24 23 19 39 39 H 1.09004 * 109.46771 * 156.14264 * 24 23 19 40 40 H 1.07996 * 119.98895 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5913 1.9865 -0.8310 5 6 3.5397 1.4451 -0.1490 6 1 4.1620 1.8033 0.6576 7 6 4.1172 0.9901 -1.3154 8 7 5.3958 0.6829 -1.3399 9 14 3.0837 0.8098 -2.8610 10 1 3.9342 0.3059 -3.9692 11 1 1.9796 -0.1508 -2.6090 12 1 2.5156 2.1302 -3.2334 13 8 1.6769 2.0841 1.2509 14 6 0.4902 2.7199 1.2901 15 8 -0.2215 2.7382 0.3064 16 6 0.0543 3.3969 2.5314 17 6 0.8709 3.3715 3.6638 18 6 0.4682 4.0056 4.8184 19 6 -0.7637 4.6658 4.8596 20 6 -1.1985 5.3394 6.0966 21 6 -0.2642 5.4257 7.2759 22 8 -2.3075 5.8239 6.1652 23 6 -1.5829 4.6861 3.7271 24 6 -2.9111 5.3968 3.7704 25 6 -1.1756 4.0562 2.5714 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9485 0.8453 -0.5595 32 1 1.8202 2.8574 3.6332 33 1 1.1018 3.9892 5.6929 34 1 0.7085 5.0188 6.9994 35 1 -0.1505 6.4679 7.5739 36 1 -0.6747 4.8528 8.1073 37 1 -3.6642 4.7338 4.1964 38 1 -2.8244 6.2917 4.3865 39 1 -3.2053 5.6787 2.7594 40 1 -1.8081 4.0721 1.6962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122898062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:59 Heat of formation + Delta-G solvation = -124.071353 kcal Electronic energy + Delta-G solvation = -22782.938393 eV Core-core repulsion = 19333.995111 eV Total energy + Delta-G solvation = -3448.943282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83825 -41.06360 -39.20941 -37.72724 -35.60697 -34.12904 -33.83827 -33.23422 -30.45866 -29.57018 -27.98948 -26.34366 -24.43071 -23.13641 -22.73657 -21.61947 -20.82710 -19.94540 -18.73673 -18.06707 -17.53952 -17.34969 -16.79307 -16.19864 -15.96858 -15.60840 -15.26181 -15.03340 -14.82737 -14.70254 -14.53682 -14.31815 -14.16527 -13.82840 -13.45124 -13.27478 -13.07544 -13.03756 -12.97967 -12.83992 -12.73735 -12.43276 -12.15541 -11.94678 -11.72152 -11.57711 -11.36538 -10.90285 -10.58507 -10.55289 -10.25094 -9.92292 -8.94893 -6.57049 -0.89266 0.18396 0.91204 1.38840 1.45470 1.63320 1.68205 1.79401 2.33946 2.62632 2.89191 2.97657 3.58425 3.62688 3.69060 4.02375 4.06408 4.14021 4.20723 4.22808 4.28521 4.40833 4.54925 4.60464 4.66127 4.68430 4.74376 4.85880 4.95936 4.97169 5.03411 5.05532 5.14162 5.15150 5.22601 5.36003 5.38608 5.42548 5.63466 5.78402 5.91631 6.36745 6.47384 6.78925 7.19747 8.47781 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.003677 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.229688 B = 7612.963784 C = 8135.894729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.145 4.145 3 C 0.203 3.797 4 H 0.029 0.971 5 C -0.617 4.617 6 H 0.034 0.966 7 C 0.000 4.000 8 N -0.918 5.918 9 Si 1.067 2.933 10 H -0.273 1.273 11 H -0.237 1.237 12 H -0.271 1.271 13 O -0.348 6.348 14 C 0.489 3.511 15 O -0.530 6.530 16 C -0.101 4.101 17 C -0.090 4.090 18 C -0.064 4.064 19 C -0.154 4.154 20 C 0.396 3.604 21 C -0.197 4.197 22 O -0.478 6.478 23 C -0.046 4.046 24 C -0.117 4.117 25 C -0.080 4.080 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.260 0.740 32 H 0.144 0.856 33 H 0.185 0.815 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 7.176 15.737 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.148 3.852 4 H 0.047 0.953 5 C -0.654 4.654 6 H 0.053 0.947 7 C -0.201 4.201 8 N -0.552 5.552 9 Si 0.887 3.113 10 H -0.198 1.198 11 H -0.161 1.161 12 H -0.196 1.196 13 O -0.264 6.264 14 C 0.335 3.665 15 O -0.422 6.422 16 C -0.102 4.102 17 C -0.108 4.108 18 C -0.081 4.081 19 C -0.155 4.155 20 C 0.277 3.723 21 C -0.254 4.254 22 O -0.356 6.356 23 C -0.046 4.046 24 C -0.173 4.173 25 C -0.099 4.099 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.202 0.798 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.993 6.885 13.913 20.899 hybrid contribution 0.657 0.400 1.108 1.349 sum -13.336 7.285 15.021 21.367 Atomic orbital electron populations 1.21816 0.94999 1.01843 1.01130 1.22323 0.95877 0.97189 1.02850 1.20739 0.94420 0.89896 0.80102 0.95308 1.22061 0.90595 1.49336 1.03449 0.94748 1.26944 0.97941 0.91642 1.03559 1.70976 1.07614 1.42428 1.34159 0.83810 0.75415 0.79096 0.72944 1.19823 1.16114 1.19601 1.86551 1.35259 1.63053 1.41552 1.21794 0.79860 0.76192 0.88667 1.90733 1.54820 1.59241 1.37406 1.19523 0.97242 1.01428 0.92052 1.21631 0.99671 0.97811 0.91658 1.21823 0.94559 0.93265 0.98446 1.20947 0.96323 1.02118 0.96122 1.22998 0.87431 0.73707 0.88163 1.22303 1.00590 1.06213 0.96254 1.90488 1.23021 1.39233 1.82892 1.20334 0.97195 0.95336 0.91740 1.21085 0.91916 1.01021 1.03262 1.21178 0.94249 0.95447 0.98980 0.94269 0.93112 0.90842 0.90542 0.91987 0.93091 0.83782 0.79830 0.87628 0.87626 0.87032 0.90151 0.89247 0.90985 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.58 71.98 0.62 -4.66 16 2 C -0.14 -6.36 5.31 30.59 0.16 -6.20 16 3 C 0.20 10.13 1.82 29.85 0.05 10.18 16 4 H 0.03 1.51 5.84 -2.39 -0.01 1.50 16 5 C -0.62 -35.57 9.17 25.60 0.23 -35.33 16 6 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 7 C 0.00 0.00 5.31 84.66 0.45 0.45 16 8 N -0.92 -55.81 13.70 21.45 0.29 -55.52 16 9 Si 1.07 49.21 26.27 68.60 1.80 51.01 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.24 -9.69 5.69 99.48 0.57 -9.12 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 O -0.35 -15.98 9.06 -55.94 -0.51 -16.48 16 14 C 0.49 19.79 6.40 70.40 0.45 20.24 16 15 O -0.53 -23.13 13.52 20.06 0.27 -22.86 16 16 C -0.10 -3.19 5.88 -20.04 -0.12 -3.30 16 17 C -0.09 -2.28 9.60 22.49 0.22 -2.06 16 18 C -0.06 -1.12 9.39 22.54 0.21 -0.91 16 19 C -0.15 -3.02 5.87 -20.10 -0.12 -3.14 16 20 C 0.40 6.55 7.17 28.10 0.20 6.75 16 21 C -0.20 -1.52 10.17 71.24 0.72 -0.79 16 22 O -0.48 -10.60 14.04 -2.84 -0.04 -10.64 16 23 C -0.05 -1.06 5.91 -19.60 -0.12 -1.18 16 24 C -0.12 -2.36 8.75 71.23 0.62 -1.74 16 25 C -0.08 -2.21 9.20 22.49 0.21 -2.01 16 26 H 0.04 1.47 6.04 -2.39 -0.01 1.45 16 27 H 0.05 1.94 7.85 -2.39 -0.02 1.92 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.08 3.39 4.77 -2.39 -0.01 3.38 16 30 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.26 15.91 8.73 -92.71 -0.81 15.10 16 32 H 0.14 3.75 7.60 -2.91 -0.02 3.73 16 33 H 0.18 1.59 6.01 -2.91 -0.02 1.57 16 34 H 0.11 0.39 5.69 -2.38 -0.01 0.38 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.89 5.79 -2.39 -0.01 1.87 16 39 H 0.07 1.30 8.04 -2.38 -0.02 1.28 16 40 H 0.14 3.82 7.63 -2.91 -0.02 3.80 16 Total: -1.00 -70.98 327.76 6.50 -64.48 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.88 Total: 13.71 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 3.80 Total: -23.69 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.29 Total: -55.52 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.28 Total: -49.98 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.80 Total: 51.01 kcal Total: -70.98 6.50 -64.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122898062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.593 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds