Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47483 * 2 1 4 4 H 1.09010 * 109.46978 * 54.99935 * 3 2 1 5 5 C 1.50698 * 109.47516 * 174.99978 * 3 2 1 6 6 H 1.08002 * 119.99794 * 119.99659 * 5 3 2 7 7 C 1.37875 * 119.99816 * 300.00823 * 5 3 2 8 8 N 1.31518 * 120.00329 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47140 * 59.99737 * 9 7 5 11 11 H 1.48497 * 109.47204 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47260 * 299.99785 * 9 7 5 13 13 O 1.45199 * 109.47277 * 295.00491 * 3 2 1 14 14 C 1.34693 * 117.00320 * 90.00010 * 13 3 2 15 15 O 1.21439 * 119.99563 * 359.97438 * 14 13 3 16 16 C 1.47959 * 119.99929 * 180.02562 * 14 13 3 17 17 C 1.39639 * 119.97906 * 0.22480 * 16 14 13 18 18 C 1.37748 * 120.02019 * 180.28036 * 17 16 14 19 19 C 1.39825 * 119.97900 * 359.49236 * 18 17 16 20 20 C 1.47410 * 120.02072 * 180.23713 * 19 18 17 21 21 C 1.50691 * 120.00062 * 353.95461 * 20 19 18 22 22 O 1.21222 * 119.99340 * 173.95833 * 20 19 18 23 23 C 1.39784 * 119.95392 * 0.25425 * 19 18 17 24 24 C 1.50697 * 120.01024 * 180.02562 * 23 19 18 25 25 C 1.37792 * 119.97913 * 0.02562 * 23 19 18 26 26 H 1.09008 * 109.46900 * 300.00270 * 1 2 3 27 27 H 1.09004 * 109.47540 * 59.99357 * 1 2 3 28 28 H 1.08995 * 109.48009 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46339 * 239.99944 * 2 1 3 30 30 H 1.08998 * 109.46921 * 120.00323 * 2 1 3 31 31 H 0.96994 * 120.00080 * 180.02562 * 8 7 5 32 32 H 1.07995 * 119.98675 * 0.02562 * 17 16 14 33 33 H 1.08003 * 120.00983 * 179.77142 * 18 17 16 34 34 H 1.09007 * 109.46918 * 60.00611 * 21 20 19 35 35 H 1.09003 * 109.47454 * 180.02562 * 21 20 19 36 36 H 1.08996 * 109.47622 * 300.00616 * 21 20 19 37 37 H 1.09004 * 109.47190 * 83.31899 * 24 23 19 38 38 H 1.09005 * 109.47036 * 203.31435 * 24 23 19 39 39 H 1.08996 * 109.47076 * 323.31293 * 24 23 19 40 40 H 1.07992 * 119.99283 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3371 2.1732 9 14 6.0050 0.8797 1.3811 10 1 6.5005 2.2797 1.3809 11 1 6.3979 0.2163 2.6502 12 1 6.5967 0.1451 0.2342 13 8 1.6559 2.0916 -1.2406 14 6 0.4687 2.7277 -1.2559 15 8 -0.2267 2.7393 -0.2604 16 6 0.0115 3.4113 -2.4859 17 6 0.8089 3.3927 -3.6320 18 6 0.3867 4.0338 -4.7758 19 6 -0.8457 4.6941 -4.7922 20 6 -1.3008 5.3760 -6.0173 21 6 -0.3825 5.4792 -7.2076 22 8 -2.4138 5.8537 -6.0671 23 6 -1.6456 4.7076 -3.6459 24 6 -2.9743 5.4185 -3.6623 25 6 -1.2189 4.0707 -2.5010 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0608 2.9501 32 1 1.7588 2.8791 -3.6204 33 1 1.0053 4.0224 -5.6610 34 1 -0.1142 4.4787 -7.5473 35 1 -0.8888 6.0127 -8.0121 36 1 0.5199 6.0209 -6.9245 37 1 -3.7326 4.7615 -4.0884 38 1 -3.2560 5.6858 -2.6438 39 1 -2.8954 6.3222 -4.2665 40 1 -1.8369 4.0806 -1.6154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122898063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = -110.432553 kcal Electronic energy + Delta-G solvation = -22701.712045 eV Core-core repulsion = 19253.360186 eV Total energy + Delta-G solvation = -3448.351859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54572 -39.60274 -38.05966 -35.81668 -33.63474 -32.95268 -32.26221 -31.33920 -29.68827 -27.46642 -26.97069 -25.04292 -23.14640 -21.91370 -21.17433 -20.10844 -19.38870 -17.41239 -16.84787 -16.73420 -15.94136 -15.61631 -15.44549 -15.24707 -14.70819 -14.44582 -14.26472 -13.58833 -13.33227 -13.25872 -12.90802 -12.77102 -12.51246 -12.46795 -12.30455 -12.08817 -11.87136 -11.52207 -11.39008 -11.23527 -11.15586 -10.98154 -10.70282 -10.33453 -9.92173 -9.79034 -9.64725 -9.43030 -9.12696 -8.87434 -8.85740 -8.49221 -6.22215 -4.29862 0.23107 1.23752 1.98554 3.04189 3.23531 3.26886 3.28721 3.48884 3.79754 3.84089 4.29127 4.56690 4.67754 4.79558 5.00030 5.09512 5.09809 5.16313 5.24519 5.29487 5.54707 5.58906 5.64516 5.72916 5.80834 6.07675 6.11674 6.19736 6.25842 6.31654 6.36022 6.43941 6.68361 6.82470 6.91782 7.12227 7.17678 7.27815 7.56448 7.68623 7.87415 8.10219 8.53811 8.81655 9.35375 10.84531 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.003575 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.153653 B = 7830.113904 C = 8515.970613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.348 6.348 14 C 0.491 3.509 15 O -0.506 6.506 16 C -0.073 4.073 17 C -0.085 4.085 18 C -0.083 4.083 19 C -0.159 4.159 20 C 0.393 3.607 21 C -0.200 4.200 22 O -0.452 6.452 23 C -0.039 4.039 24 C -0.120 4.120 25 C -0.078 4.078 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.110 0.890 31 H 0.267 0.733 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 7.292 -15.128 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.264 6.264 14 C 0.335 3.665 15 O -0.397 6.397 16 C -0.074 4.074 17 C -0.103 4.103 18 C -0.101 4.101 19 C -0.160 4.160 20 C 0.272 3.728 21 C -0.257 4.257 22 O -0.329 6.329 23 C -0.039 4.039 24 C -0.176 4.176 25 C -0.097 4.097 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.379 7.411 -14.644 17.995 hybrid contribution 1.087 -0.271 0.372 1.180 sum -6.292 7.140 -14.272 17.154 Atomic orbital electron populations 1.21869 0.98368 0.99112 1.00741 1.22028 0.92640 0.99256 1.03461 1.20736 0.95093 0.88779 0.78392 0.93392 1.20986 0.89525 1.39245 1.06373 0.91315 1.24882 0.99277 0.94691 0.95021 1.69876 1.35535 1.37641 1.09443 0.86331 0.83784 0.78505 0.77508 1.19973 1.21017 1.19907 1.86520 1.33339 1.62212 1.44346 1.20989 0.81279 0.77099 0.87178 1.90777 1.55483 1.58339 1.35084 1.19728 0.95482 0.99000 0.93181 1.21547 1.00151 0.97318 0.91296 1.21381 0.94522 0.95663 0.98506 1.20505 0.96655 1.03218 0.95658 1.22554 0.87254 0.75057 0.87889 1.22259 1.01252 1.04740 0.97481 1.90487 1.21263 1.38535 1.82599 1.20106 0.96329 0.95586 0.91892 1.21078 0.92655 1.01241 1.02609 1.21212 0.94842 0.95182 0.98423 0.92770 0.95013 0.94715 0.93890 0.87232 0.92264 0.83391 0.84403 0.88672 0.89738 0.88687 0.90564 0.91855 0.89153 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.56 37.16 0.32 -2.81 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.78 2.25 -27.89 -0.06 5.72 16 4 H 0.05 1.39 7.16 -51.92 -0.37 1.02 16 5 C -0.52 -14.29 8.90 -34.44 -0.31 -14.59 16 6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.65 11.29 55.43 0.63 -24.02 16 9 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.35 -8.01 9.04 -40.47 -0.37 -8.37 16 14 C 0.49 10.20 6.36 34.71 0.22 10.42 16 15 O -0.51 -11.60 13.51 -19.22 -0.26 -11.86 16 16 C -0.07 -1.18 5.88 -104.88 -0.62 -1.80 16 17 C -0.09 -1.15 9.60 -39.24 -0.38 -1.52 16 18 C -0.08 -0.87 9.45 -39.17 -0.37 -1.24 16 19 C -0.16 -1.81 5.87 -104.99 -0.62 -2.43 16 20 C 0.39 3.95 7.16 -30.58 -0.22 3.73 16 21 C -0.20 -1.23 9.01 36.00 0.32 -0.90 16 22 O -0.45 -5.66 14.05 5.61 0.08 -5.58 16 23 C -0.04 -0.49 5.91 -104.21 -0.62 -1.11 16 24 C -0.12 -1.34 8.72 36.00 0.31 -1.03 16 25 C -0.08 -1.14 9.20 -39.24 -0.36 -1.50 16 26 H 0.05 1.23 7.79 -51.92 -0.40 0.83 16 27 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.15 1.96 7.60 -52.49 -0.40 1.56 16 33 H 0.14 0.94 6.97 -52.48 -0.37 0.58 16 34 H 0.09 0.43 7.90 -51.93 -0.41 0.02 16 35 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 39 H 0.09 1.05 5.84 -51.93 -0.30 0.74 16 40 H 0.14 2.05 7.63 -52.49 -0.40 1.65 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -30.60 334.16 -7.87 -38.47 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.35 Total: 1.65 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.61 Total: -10.90 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.63 Total: -24.02 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.55 Total: -25.81 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.60 -7.87 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122898063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.967 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds