Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47483 * 2 1 4 4 H 1.09010 * 109.46978 * 54.99935 * 3 2 1 5 5 C 1.50698 * 109.47516 * 174.99978 * 3 2 1 6 6 H 1.08002 * 119.99794 * 119.99659 * 5 3 2 7 7 C 1.37875 * 119.99816 * 300.00823 * 5 3 2 8 8 N 1.31518 * 120.00329 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47140 * 59.99737 * 9 7 5 11 11 H 1.48497 * 109.47204 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47260 * 299.99785 * 9 7 5 13 13 O 1.45199 * 109.47277 * 295.00491 * 3 2 1 14 14 C 1.34693 * 117.00320 * 90.00010 * 13 3 2 15 15 O 1.21439 * 119.99563 * 359.97438 * 14 13 3 16 16 C 1.47959 * 119.99929 * 180.02562 * 14 13 3 17 17 C 1.39639 * 119.97906 * 0.22480 * 16 14 13 18 18 C 1.37748 * 120.02019 * 180.28036 * 17 16 14 19 19 C 1.39825 * 119.97900 * 359.49236 * 18 17 16 20 20 C 1.47410 * 120.02072 * 180.23713 * 19 18 17 21 21 C 1.50691 * 120.00062 * 353.95461 * 20 19 18 22 22 O 1.21222 * 119.99340 * 173.95833 * 20 19 18 23 23 C 1.39784 * 119.95392 * 0.25425 * 19 18 17 24 24 C 1.50697 * 120.01024 * 180.02562 * 23 19 18 25 25 C 1.37792 * 119.97913 * 0.02562 * 23 19 18 26 26 H 1.09008 * 109.46900 * 300.00270 * 1 2 3 27 27 H 1.09004 * 109.47540 * 59.99357 * 1 2 3 28 28 H 1.08995 * 109.48009 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46339 * 239.99944 * 2 1 3 30 30 H 1.08998 * 109.46921 * 120.00323 * 2 1 3 31 31 H 0.96994 * 120.00080 * 180.02562 * 8 7 5 32 32 H 1.07995 * 119.98675 * 0.02562 * 17 16 14 33 33 H 1.08003 * 120.00983 * 179.77142 * 18 17 16 34 34 H 1.09007 * 109.46918 * 60.00611 * 21 20 19 35 35 H 1.09003 * 109.47454 * 180.02562 * 21 20 19 36 36 H 1.08996 * 109.47622 * 300.00616 * 21 20 19 37 37 H 1.09004 * 109.47190 * 83.31899 * 24 23 19 38 38 H 1.09005 * 109.47036 * 203.31435 * 24 23 19 39 39 H 1.08996 * 109.47076 * 323.31293 * 24 23 19 40 40 H 1.07992 * 119.99283 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3371 2.1732 9 14 6.0050 0.8797 1.3811 10 1 6.5005 2.2797 1.3809 11 1 6.3979 0.2163 2.6502 12 1 6.5967 0.1451 0.2342 13 8 1.6559 2.0916 -1.2406 14 6 0.4687 2.7277 -1.2559 15 8 -0.2267 2.7393 -0.2604 16 6 0.0115 3.4113 -2.4859 17 6 0.8089 3.3927 -3.6320 18 6 0.3867 4.0338 -4.7758 19 6 -0.8457 4.6941 -4.7922 20 6 -1.3008 5.3760 -6.0173 21 6 -0.3825 5.4792 -7.2076 22 8 -2.4138 5.8537 -6.0671 23 6 -1.6456 4.7076 -3.6459 24 6 -2.9743 5.4185 -3.6623 25 6 -1.2189 4.0707 -2.5010 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0608 2.9501 32 1 1.7588 2.8791 -3.6204 33 1 1.0053 4.0224 -5.6610 34 1 -0.1142 4.4787 -7.5473 35 1 -0.8888 6.0127 -8.0121 36 1 0.5199 6.0209 -6.9245 37 1 -3.7326 4.7615 -4.0884 38 1 -3.2560 5.6858 -2.6438 39 1 -2.8954 6.3222 -4.2665 40 1 -1.8369 4.0806 -1.6154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122898063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = -126.188206 kcal Electronic energy + Delta-G solvation = -22702.395261 eV Core-core repulsion = 19253.360186 eV Total energy + Delta-G solvation = -3449.035075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74278 -40.97680 -39.14936 -37.60984 -35.55115 -33.99699 -33.48228 -33.06482 -30.44249 -29.38852 -27.95674 -26.37069 -25.00785 -23.00818 -22.58787 -21.56671 -20.75798 -19.05447 -18.50344 -17.89030 -17.42160 -17.16974 -16.78327 -16.41386 -16.16017 -15.51390 -15.18125 -14.99150 -14.77817 -14.51066 -14.26214 -14.11706 -13.80128 -13.39951 -13.29363 -13.27361 -13.15784 -12.99583 -12.98097 -12.80419 -12.79851 -12.57076 -12.18010 -12.13853 -11.79033 -11.55460 -11.38180 -10.85311 -10.54976 -10.53210 -10.19845 -9.88145 -8.27382 -6.44675 -0.83566 0.22861 0.97430 1.42770 1.46484 1.54295 1.75167 1.88614 2.40895 2.67968 3.01762 3.02711 3.64488 3.71442 3.77377 4.09109 4.11219 4.24224 4.34531 4.36637 4.46443 4.53469 4.60091 4.71712 4.75180 4.76633 4.80594 4.82978 5.02870 5.05934 5.15330 5.18313 5.19775 5.26235 5.33812 5.43122 5.50315 5.64691 5.68335 5.92970 6.07758 6.51210 6.58951 6.90029 7.26338 8.79351 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.003575 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.153653 B = 7830.113904 C = 8515.970613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.982 3.018 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.262 1.262 13 O -0.351 6.351 14 C 0.487 3.513 15 O -0.539 6.539 16 C -0.100 4.100 17 C -0.087 4.087 18 C -0.059 4.059 19 C -0.155 4.155 20 C 0.395 3.605 21 C -0.195 4.195 22 O -0.480 6.480 23 C -0.048 4.048 24 C -0.116 4.116 25 C -0.085 4.085 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.271 0.729 32 H 0.150 0.850 33 H 0.187 0.813 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 7.737 -18.127 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.186 1.186 13 O -0.268 6.268 14 C 0.333 3.667 15 O -0.431 6.431 16 C -0.101 4.101 17 C -0.105 4.105 18 C -0.077 4.077 19 C -0.156 4.156 20 C 0.276 3.724 21 C -0.252 4.252 22 O -0.358 6.358 23 C -0.048 4.048 24 C -0.172 4.172 25 C -0.103 4.103 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.204 0.796 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.228 7.863 -17.664 20.314 hybrid contribution 0.632 -0.331 1.231 1.423 sum -5.596 7.532 -16.433 18.923 Atomic orbital electron populations 1.21721 0.96511 1.00630 0.99930 1.21875 0.94250 0.98055 1.02559 1.20437 0.94736 0.89256 0.78330 0.97621 1.21297 0.90253 1.40130 1.07087 0.91221 1.25813 1.04290 0.93818 0.94309 1.70009 1.37588 1.37858 1.09850 0.85250 0.77579 0.78781 0.77913 1.19398 1.20427 1.18634 1.86496 1.34839 1.62763 1.42671 1.21828 0.80046 0.76304 0.88508 1.90749 1.56021 1.59556 1.36761 1.19546 0.97149 1.01178 0.92272 1.21666 0.99855 0.97677 0.91293 1.21780 0.94151 0.93025 0.98710 1.20932 0.96519 1.02237 0.95868 1.23046 0.87366 0.73746 0.88247 1.22315 1.00894 1.06604 0.95352 1.90494 1.22748 1.39565 1.83016 1.20309 0.97197 0.95443 0.91835 1.21060 0.92048 1.01016 1.03044 1.21149 0.94331 0.95790 0.99030 0.94615 0.94763 0.91878 0.93259 0.89394 0.92018 0.83200 0.79576 0.86231 0.89294 0.86518 0.90274 0.91265 0.89242 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.56 71.98 0.62 -5.20 16 2 C -0.13 -6.51 5.49 30.59 0.17 -6.34 16 3 C 0.23 12.25 2.25 29.84 0.07 12.31 16 4 H 0.01 0.37 7.16 -2.38 -0.02 0.35 16 5 C -0.55 -30.75 8.90 25.60 0.23 -30.53 16 6 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.96 5.29 84.65 0.45 1.40 16 8 N -0.92 -52.08 11.29 21.45 0.24 -51.84 16 9 Si 0.98 42.14 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 13 O -0.35 -16.75 9.04 -56.02 -0.51 -17.26 16 14 C 0.49 21.15 6.36 70.40 0.45 21.60 16 15 O -0.54 -26.24 13.51 20.03 0.27 -25.97 16 16 C -0.10 -3.31 5.88 -20.03 -0.12 -3.43 16 17 C -0.09 -2.21 9.60 22.49 0.22 -1.99 16 18 C -0.06 -1.02 9.45 22.54 0.21 -0.81 16 19 C -0.15 -3.08 5.87 -20.10 -0.12 -3.20 16 20 C 0.40 6.63 7.16 28.10 0.20 6.83 16 21 C -0.20 -1.43 9.01 71.23 0.64 -0.79 16 22 O -0.48 -10.98 14.05 -2.85 -0.04 -11.02 16 23 C -0.05 -1.17 5.91 -19.60 -0.12 -1.28 16 24 C -0.12 -2.51 8.72 71.23 0.62 -1.89 16 25 C -0.08 -2.51 9.20 22.49 0.21 -2.31 16 26 H 0.03 1.69 7.79 -2.38 -0.02 1.67 16 27 H 0.03 1.47 6.06 -2.39 -0.01 1.46 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.09 4.82 5.95 -2.39 -0.01 4.81 16 31 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.15 3.74 7.60 -2.91 -0.02 3.72 16 33 H 0.19 1.41 6.97 -2.91 -0.02 1.39 16 34 H 0.12 0.37 7.90 -2.38 -0.02 0.35 16 35 H 0.09 0.66 8.12 -2.39 -0.02 0.64 16 36 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.38 8.04 -2.38 -0.02 1.36 16 39 H 0.09 1.99 5.84 -2.39 -0.01 1.97 16 40 H 0.13 4.06 7.63 -2.91 -0.02 4.04 16 Total: -1.00 -69.80 334.16 6.77 -63.03 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.05 Total: 14.51 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.72 Total: -15.63 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.24 Total: -51.84 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.28 Total: -54.24 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.80 6.77 -63.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122898063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.153 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds