Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46684 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00137 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47303 * 180.02562 * 15 13 12 17 17 H 1.09007 * 110.12612 * 304.75222 * 16 15 13 18 18 O 1.43934 * 110.15688 * 66.45329 * 16 15 13 19 19 C 1.43937 * 104.95085 * 90.68027 * 18 16 15 20 20 C 1.51080 * 105.95600 * 28.44395 * 19 18 16 21 21 C 1.37969 * 132.68609 * 162.28409 * 20 19 18 22 22 C 1.38292 * 119.91744 * 180.02562 * 21 20 19 23 23 C 1.38269 * 120.04239 * 0.02562 * 22 21 20 24 24 C 1.38294 * 120.03954 * 359.97438 * 23 22 21 25 25 C 1.37968 * 119.91772 * 0.03923 * 24 23 22 26 26 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 28 28 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 29 29 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 30 30 H 1.09000 * 109.47486 * 300.00065 * 11 10 9 31 31 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 33 33 H 1.09000 * 109.46978 * 300.00347 * 15 13 12 34 34 H 1.08996 * 109.47197 * 59.99985 * 15 13 12 35 35 H 1.09006 * 110.15546 * 147.57010 * 19 18 16 36 36 H 1.08997 * 110.15748 * 269.31833 * 19 18 16 37 37 H 1.07998 * 120.04139 * 0.02562 * 21 20 19 38 38 H 1.08004 * 119.97818 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.97888 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.03523 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 7 1.7964 -6.0884 -0.0007 13 6 1.1225 -7.2556 -0.0008 14 8 -0.0903 -7.2555 -0.0009 15 6 1.8760 -8.5607 -0.0009 16 6 0.8817 -9.7236 -0.0017 17 1 0.1942 -9.6298 0.8390 18 8 0.1497 -9.7495 -1.2407 19 6 0.9216 -10.5976 -2.1104 20 6 1.6442 -11.5703 -1.2080 21 6 2.2605 -12.7823 -1.4418 22 6 2.8542 -13.4671 -0.3972 23 6 2.8297 -12.9380 0.8800 24 6 2.2119 -11.7231 1.1143 25 6 1.6194 -11.0401 0.0722 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0039 28 1 2.6848 -3.7145 -0.8894 29 1 2.6847 -3.7144 0.8906 30 1 0.4368 -4.7621 0.8896 31 1 0.4376 -4.7618 -0.8904 32 1 2.7664 -6.0884 -0.0003 33 1 2.5027 -8.6183 -0.8908 34 1 2.5026 -8.6185 0.8891 35 1 0.2628 -11.1359 -2.7919 36 1 1.6406 -10.0029 -2.6739 37 1 2.2793 -13.1958 -2.4393 38 1 3.3366 -14.4161 -0.5791 39 1 3.2933 -13.4738 1.6950 40 1 2.1925 -11.3101 2.1120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149351386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = -36.440465 kcal Electronic energy + Delta-G solvation = -21775.075043 eV Core-core repulsion = 18362.224473 eV Total energy + Delta-G solvation = -3412.850570 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24103 -39.33693 -37.61514 -35.63216 -33.78575 -32.71427 -31.64285 -31.27964 -30.37251 -27.87384 -26.57532 -24.46173 -23.40119 -21.90694 -21.58878 -21.30336 -20.10468 -17.45669 -17.23192 -16.97224 -16.63431 -16.12925 -15.73723 -15.40180 -15.14944 -14.60135 -14.41020 -14.16485 -13.85530 -13.60973 -13.41410 -13.13444 -13.13095 -12.81084 -12.73766 -12.21523 -12.08401 -11.60508 -11.34008 -11.19447 -11.08656 -10.80575 -10.78773 -10.26710 -10.14370 -9.84850 -9.65896 -9.29130 -8.95946 -8.94146 -8.77796 -6.98443 -5.78374 -3.09198 0.82324 0.92651 2.79735 3.17878 3.33756 3.43345 3.47560 3.49078 3.70864 3.87093 4.27029 4.51859 4.58371 4.61549 4.62276 4.86356 4.95080 5.03333 5.08857 5.16422 5.16762 5.33618 5.47447 5.51355 5.57370 5.60180 5.66722 5.81306 5.95725 5.98937 6.03048 6.05291 6.18273 6.47091 6.52907 6.57554 6.72694 6.78459 7.65822 7.66978 8.38343 8.40859 9.50285 10.05434 10.40235 11.44118 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043475 B = 0.002288 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.895195 B =12234.546858 C =12443.377428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.726 5.726 13 C 0.512 3.488 14 O -0.528 6.528 15 C -0.155 4.155 16 C 0.138 3.862 17 H 0.113 0.887 18 O -0.332 6.332 19 C 0.081 3.919 20 C -0.126 4.126 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.090 4.090 25 C -0.124 4.124 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.398 0.602 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -29.436 -0.550 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.378 5.378 13 C 0.297 3.703 14 O -0.404 6.404 15 C -0.196 4.196 16 C 0.080 3.920 17 H 0.131 0.869 18 O -0.250 6.250 19 C 0.004 3.996 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.108 4.108 25 C -0.124 4.124 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.232 0.768 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.980 -29.160 -0.604 29.990 hybrid contribution 0.971 0.826 0.008 1.275 sum 7.951 -28.334 -0.596 29.434 Atomic orbital electron populations 1.69659 1.05146 1.25960 1.57093 1.24790 0.95577 0.97830 1.02684 0.86217 0.78483 0.83299 0.77844 1.21203 1.21609 1.21194 1.19147 0.90990 0.83887 1.43555 0.91102 1.42193 1.06023 0.99577 1.89693 1.20754 0.93509 0.85737 0.98320 1.21561 0.95412 0.81724 1.02536 1.45942 1.10310 1.06030 1.75536 1.20313 0.88292 0.85048 0.76665 1.90749 1.13707 1.87433 1.48495 1.22115 0.99356 0.92887 1.05224 1.21023 0.92326 0.88949 0.89715 0.86942 1.89330 1.44957 1.67873 1.22835 1.21845 0.94773 0.90212 0.92744 1.21147 0.99716 0.96052 0.95729 1.20420 0.97939 0.93437 0.99633 1.21161 0.99381 0.99975 0.92784 1.21158 0.99442 0.95674 0.97239 1.20466 0.97352 0.94704 0.98314 1.21018 1.00089 0.96733 0.94607 0.93300 0.77983 0.95898 0.95835 0.91338 0.91337 0.76823 0.88555 0.87742 0.88400 0.90582 0.85694 0.85489 0.85414 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.83 5.60 -59.90 -0.34 -19.16 16 10 C 0.15 2.88 6.37 -4.04 -0.03 2.85 16 11 C 0.11 1.96 5.79 -4.04 -0.02 1.94 16 12 N -0.73 -10.03 5.56 -60.29 -0.33 -10.36 16 13 C 0.51 7.36 7.73 -10.99 -0.08 7.27 16 14 O -0.53 -9.97 15.52 -6.37 -0.10 -10.07 16 15 C -0.16 -1.55 5.38 -27.88 -0.15 -1.70 16 16 C 0.14 1.54 2.93 -27.69 -0.08 1.46 16 17 H 0.11 1.34 7.98 -51.93 -0.41 0.92 16 18 O -0.33 -4.43 10.78 -47.16 -0.51 -4.94 16 19 C 0.08 0.77 7.39 36.19 0.27 1.04 16 20 C -0.13 -1.14 6.32 -104.40 -0.66 -1.80 16 21 C -0.10 -0.70 10.04 -39.66 -0.40 -1.10 16 22 C -0.12 -0.74 10.05 -39.55 -0.40 -1.14 16 23 C -0.12 -0.77 10.05 -39.55 -0.40 -1.17 16 24 C -0.09 -0.70 10.04 -39.66 -0.40 -1.09 16 25 C -0.12 -1.17 5.63 -104.40 -0.59 -1.75 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.39 10.56 7.67 -40.82 -0.31 10.25 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 33 H 0.10 0.84 7.97 -51.93 -0.41 0.42 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -35.13 342.06 -9.29 -44.42 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.68 Total: 8.04 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.18 Total: -2.70 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.05 Total: -57.32 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.61 Total: -15.01 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.13 -9.29 -44.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149351386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.977 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds