Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46684 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00137 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47303 * 180.02562 * 15 13 12 17 17 H 1.09007 * 110.12612 * 304.75222 * 16 15 13 18 18 O 1.43934 * 110.15688 * 66.45329 * 16 15 13 19 19 C 1.43937 * 104.95085 * 90.68027 * 18 16 15 20 20 C 1.51080 * 105.95600 * 28.44395 * 19 18 16 21 21 C 1.37969 * 132.68609 * 162.28409 * 20 19 18 22 22 C 1.38292 * 119.91744 * 180.02562 * 21 20 19 23 23 C 1.38269 * 120.04239 * 0.02562 * 22 21 20 24 24 C 1.38294 * 120.03954 * 359.97438 * 23 22 21 25 25 C 1.37968 * 119.91772 * 0.03923 * 24 23 22 26 26 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 28 28 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 29 29 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 30 30 H 1.09000 * 109.47486 * 300.00065 * 11 10 9 31 31 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 33 33 H 1.09000 * 109.46978 * 300.00347 * 15 13 12 34 34 H 1.08996 * 109.47197 * 59.99985 * 15 13 12 35 35 H 1.09006 * 110.15546 * 147.57010 * 19 18 16 36 36 H 1.08997 * 110.15748 * 269.31833 * 19 18 16 37 37 H 1.07998 * 120.04139 * 0.02562 * 21 20 19 38 38 H 1.08004 * 119.97818 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.97888 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.03523 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 7 1.7964 -6.0884 -0.0007 13 6 1.1225 -7.2556 -0.0008 14 8 -0.0903 -7.2555 -0.0009 15 6 1.8760 -8.5607 -0.0009 16 6 0.8817 -9.7236 -0.0017 17 1 0.1942 -9.6298 0.8390 18 8 0.1497 -9.7495 -1.2407 19 6 0.9216 -10.5976 -2.1104 20 6 1.6442 -11.5703 -1.2080 21 6 2.2605 -12.7823 -1.4418 22 6 2.8542 -13.4671 -0.3972 23 6 2.8297 -12.9380 0.8800 24 6 2.2119 -11.7231 1.1143 25 6 1.6194 -11.0401 0.0722 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0039 28 1 2.6848 -3.7145 -0.8894 29 1 2.6847 -3.7144 0.8906 30 1 0.4368 -4.7621 0.8896 31 1 0.4376 -4.7618 -0.8904 32 1 2.7664 -6.0884 -0.0003 33 1 2.5027 -8.6183 -0.8908 34 1 2.5026 -8.6185 0.8891 35 1 0.2628 -11.1359 -2.7919 36 1 1.6406 -10.0029 -2.6739 37 1 2.2793 -13.1958 -2.4393 38 1 3.3366 -14.4161 -0.5791 39 1 3.2933 -13.4738 1.6950 40 1 2.1925 -11.3101 2.1120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149351386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = -61.086770 kcal Electronic energy + Delta-G solvation = -21776.143787 eV Core-core repulsion = 18362.224473 eV Total energy + Delta-G solvation = -3413.919314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97695 -40.48689 -38.31568 -37.28852 -35.47013 -33.59541 -33.04395 -32.25968 -31.22778 -29.37997 -27.47595 -25.72094 -24.78483 -23.11791 -22.49495 -22.19513 -21.21226 -19.33261 -18.31812 -17.77308 -17.43509 -17.12815 -16.65171 -16.61628 -16.45016 -16.07988 -15.42953 -15.24930 -15.09232 -14.88095 -14.68457 -14.46504 -13.99355 -13.84276 -13.50110 -13.13319 -13.04509 -12.86721 -12.78870 -12.59845 -12.53804 -12.20279 -12.12206 -11.87350 -11.76833 -11.05235 -10.98418 -10.95710 -10.13113 -9.83807 -9.55208 -9.07708 -7.97134 -5.29042 0.26136 0.39732 1.47912 1.52053 1.58185 1.64966 2.08528 2.57456 2.74114 2.94815 3.20930 3.36649 3.56689 3.69042 3.95518 4.00819 4.06154 4.14690 4.20654 4.22303 4.27336 4.40282 4.44717 4.55350 4.57419 4.61290 4.69202 4.84158 4.93121 5.03552 5.10157 5.12642 5.39320 5.42286 5.45365 5.48464 5.55259 5.81115 6.00945 6.23231 6.55943 7.27381 7.29277 8.01161 8.24283 9.26362 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043475 B = 0.002288 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.895195 B =12234.546858 C =12443.377428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.150 3.850 11 C 0.128 3.872 12 N -0.713 5.713 13 C 0.509 3.491 14 O -0.579 6.579 15 C -0.141 4.141 16 C 0.135 3.865 17 H 0.093 0.907 18 O -0.371 6.371 19 C 0.076 3.924 20 C -0.140 4.140 21 C -0.102 4.102 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.097 4.097 25 C -0.139 4.139 26 H 0.252 0.748 27 H 0.373 0.627 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.417 0.583 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.962 -31.196 -0.359 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.810 3.190 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.297 3.703 14 O -0.458 6.458 15 C -0.181 4.181 16 C 0.076 3.924 17 H 0.111 0.889 18 O -0.290 6.290 19 C 0.000 4.000 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.115 4.115 25 C -0.139 4.139 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.254 0.746 33 H 0.134 0.866 34 H 0.155 0.845 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.057 -30.966 -0.413 32.561 hybrid contribution 0.062 1.228 -0.053 1.231 sum 10.119 -29.738 -0.467 31.416 Atomic orbital electron populations 1.69839 1.06883 1.26392 1.59042 1.25718 0.96474 1.01602 1.03316 0.85097 0.77080 0.78466 0.78391 1.20074 1.22319 1.20003 1.19626 0.91745 0.84844 1.41908 0.89835 1.42447 1.05756 1.01169 1.89804 1.20848 0.93551 0.84033 0.99260 1.21114 0.94817 0.82949 1.00820 1.45754 1.11151 1.04603 1.75137 1.21124 0.87910 0.86250 0.75021 1.90733 1.16206 1.88153 1.50686 1.22101 0.98905 0.89442 1.07606 1.21009 0.92250 0.90581 0.88524 0.88936 1.89279 1.46684 1.68847 1.24153 1.21988 0.95008 0.90360 0.92640 1.21189 1.00597 0.96840 0.95396 1.20717 0.97454 0.92767 1.01020 1.21548 0.98540 1.00712 0.92423 1.21516 0.98729 0.95174 0.98196 1.20726 0.97118 0.95143 0.98528 1.20911 1.01265 0.96240 0.95529 0.93888 0.79527 0.94546 0.94275 0.93003 0.93360 0.74556 0.86638 0.84477 0.87635 0.89723 0.83857 0.82875 0.82943 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 46.05 29.55 68.60 2.03 48.07 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.75 -38.83 5.60 -343.44 -1.92 -40.75 16 10 C 0.15 5.82 6.37 86.38 0.55 6.37 16 11 C 0.13 4.55 5.79 86.38 0.50 5.05 16 12 N -0.71 -18.98 5.56 -463.05 -2.57 -21.55 16 13 C 0.51 14.53 7.73 87.66 0.68 15.21 16 14 O -0.58 -22.68 15.52 8.36 0.13 -22.55 16 15 C -0.14 -2.62 5.38 29.85 0.16 -2.46 16 16 C 0.13 3.01 2.93 29.97 0.09 3.10 16 17 H 0.09 2.33 7.98 -2.38 -0.02 2.32 16 18 O -0.37 -10.21 10.78 -137.58 -1.48 -11.69 16 19 C 0.08 1.43 7.39 71.36 0.53 1.96 16 20 C -0.14 -2.36 6.32 -19.72 -0.12 -2.48 16 21 C -0.10 -1.25 10.04 22.22 0.22 -1.03 16 22 C -0.11 -1.11 10.05 22.29 0.22 -0.89 16 23 C -0.12 -1.20 10.05 22.29 0.22 -0.97 16 24 C -0.10 -1.30 10.04 22.22 0.22 -1.07 16 25 C -0.14 -2.46 5.63 -19.72 -0.11 -2.57 16 26 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.37 21.01 7.67 -92.71 -0.71 20.30 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.42 7.90 8.47 -92.71 -0.79 7.11 16 33 H 0.12 1.75 7.97 -2.39 -0.02 1.73 16 34 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 40 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -77.57 342.06 0.49 -77.08 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.44 Total: 28.85 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 4.47 Total: 2.97 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -4.21 Total: -122.73 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.35 Total: -34.24 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.57 0.49 -77.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149351386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.995 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds