Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48506 * 109.46920 * 269.99746 * 3 2 1 5 5 H 1.48494 * 109.47145 * 29.99565 * 3 2 1 6 6 H 1.48493 * 109.47253 * 150.00200 * 3 2 1 7 7 C 1.38817 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00037 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 10 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47212 * 180.02562 * 15 13 12 17 17 H 1.09005 * 110.13339 * 54.29743 * 16 15 13 18 18 O 1.43951 * 110.15395 * 292.60240 * 16 15 13 19 19 C 1.44112 * 104.85709 * 269.29562 * 18 16 15 20 20 C 1.51082 * 105.97560 * 331.54889 * 19 18 16 21 21 C 1.37964 * 132.68607 * 197.69751 * 20 19 18 22 22 C 1.38292 * 119.91656 * 180.02562 * 21 20 19 23 23 C 1.38263 * 120.04299 * 359.97438 * 22 21 20 24 24 C 1.38288 * 120.04264 * 0.02562 * 23 22 21 25 25 C 1.37978 * 119.91764 * 359.96604 * 24 23 22 26 26 H 0.97001 * 119.99359 * 0.02562 * 1 2 3 27 27 H 0.97004 * 120.00567 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47129 * 59.99499 * 10 9 7 29 29 H 1.08998 * 109.46845 * 300.00306 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 32 32 H 0.96996 * 119.99606 * 0.02562 * 12 11 10 33 33 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 34 34 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 35 35 H 1.09005 * 110.13458 * 212.42411 * 19 18 16 36 36 H 1.09004 * 110.21283 * 90.72014 * 19 18 16 37 37 H 1.08003 * 120.04128 * 0.02997 * 21 20 19 38 38 H 1.08007 * 119.97811 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.97634 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.04319 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0885 0.0006 13 6 1.1222 -7.2556 0.0015 14 8 -0.0906 -7.2556 0.0024 15 6 1.8757 -8.5607 0.0003 16 6 0.8814 -9.7236 0.0010 17 1 0.1827 -9.6205 -0.8292 18 8 0.1658 -9.7635 1.2494 19 6 0.9513 -10.6231 2.0984 20 6 1.6607 -11.5848 1.1741 21 6 2.2806 -12.7993 1.3845 22 6 2.8600 -13.4709 0.3235 23 6 2.8177 -12.9263 -0.9467 24 6 2.1964 -11.7089 -1.1576 25 6 1.6181 -11.0389 -0.0991 26 1 -0.4849 0.8401 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.6846 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8894 30 1 0.4366 -4.7622 -0.8886 31 1 0.4374 -4.7618 0.8914 32 1 2.7661 -6.0885 0.0002 33 1 2.5010 -8.6185 -0.8906 34 1 2.5036 -8.6186 0.8894 35 1 0.3021 -11.1696 2.7826 36 1 1.6782 -10.0360 2.6596 37 1 2.3132 -13.2249 2.3765 38 1 3.3459 -14.4215 0.4872 39 1 3.2709 -13.4515 -1.7744 40 1 2.1630 -11.2837 -2.1498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149351393.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = -36.564936 kcal Electronic energy + Delta-G solvation = -21770.860512 eV Core-core repulsion = 18358.004544 eV Total energy + Delta-G solvation = -3412.855968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23366 -39.34068 -37.60975 -35.63564 -33.78920 -32.71138 -31.64604 -31.28151 -30.37196 -27.87442 -26.57696 -24.46437 -23.40422 -21.90529 -21.58947 -21.30459 -20.10826 -17.46075 -17.23379 -16.96681 -16.63546 -16.13076 -15.73761 -15.40400 -15.14859 -14.60262 -14.40947 -14.16440 -13.85697 -13.61357 -13.41373 -13.13952 -13.13386 -12.81384 -12.73264 -12.21981 -12.08403 -11.60680 -11.34338 -11.19470 -11.09180 -10.81337 -10.79363 -10.27311 -10.11574 -9.85374 -9.66371 -9.29186 -8.96512 -8.94289 -8.78119 -6.98537 -5.78760 -3.09492 0.82262 0.92581 2.79457 3.17774 3.33695 3.42735 3.47606 3.49691 3.70664 3.86781 4.26692 4.51765 4.58177 4.61432 4.62225 4.86362 4.94982 5.03067 5.08843 5.16094 5.16577 5.33488 5.47217 5.51184 5.57234 5.60143 5.66714 5.81116 5.95665 5.98728 6.02913 6.05231 6.18075 6.46681 6.52686 6.56755 6.72494 6.78240 7.66030 7.66904 8.37991 8.40530 9.50014 10.05168 10.39936 11.43815 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043416 B = 0.002287 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.761688 B =12241.654674 C =12450.800297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.726 5.726 13 C 0.512 3.488 14 O -0.528 6.528 15 C -0.155 4.155 16 C 0.138 3.862 17 H 0.113 0.887 18 O -0.333 6.333 19 C 0.081 3.919 20 C -0.126 4.126 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.090 4.090 25 C -0.124 4.124 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.398 0.602 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 -29.470 0.469 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.378 5.378 13 C 0.297 3.703 14 O -0.404 6.404 15 C -0.196 4.196 16 C 0.080 3.920 17 H 0.131 0.869 18 O -0.250 6.250 19 C 0.004 3.996 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.135 4.135 24 C -0.108 4.108 25 C -0.124 4.124 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.232 0.768 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.035 -29.199 0.540 30.039 hybrid contribution 0.955 0.832 -0.033 1.267 sum 7.989 -28.367 0.507 29.475 Atomic orbital electron populations 1.69673 1.05146 1.25835 1.57185 1.24792 0.95582 0.97840 1.02711 0.86140 0.78590 0.83595 0.77533 1.21634 1.21686 1.20722 1.19191 0.91020 0.83874 1.43408 0.91047 1.42201 1.06031 0.99587 1.89677 1.20753 0.93509 0.85735 0.98327 1.21561 0.95415 0.81725 1.02541 1.45938 1.10313 1.06030 1.75520 1.20314 0.88288 0.85056 0.76648 1.90747 1.13717 1.87435 1.48529 1.22115 0.99355 0.92879 1.05227 1.21024 0.92600 0.88984 0.89433 0.86923 1.89367 1.45234 1.67349 1.23090 1.21870 0.94681 0.90178 0.92866 1.21138 0.99719 0.96020 0.95762 1.20418 0.97971 0.93481 0.99555 1.21160 0.99437 0.99996 0.92711 1.21155 0.99396 0.95585 0.97368 1.20468 0.97405 0.94787 0.98179 1.21020 1.00113 0.96721 0.94577 0.93357 0.77985 0.95866 0.95858 0.91347 0.91321 0.76817 0.87748 0.88534 0.88406 0.90547 0.85693 0.85487 0.85412 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.82 5.60 -59.91 -0.34 -19.15 16 10 C 0.14 2.88 6.37 -4.04 -0.03 2.85 16 11 C 0.11 1.96 5.79 -4.04 -0.02 1.94 16 12 N -0.73 -10.02 5.56 -60.29 -0.33 -10.35 16 13 C 0.51 7.36 7.74 -10.99 -0.09 7.27 16 14 O -0.53 -9.98 15.54 -5.07 -0.08 -10.06 16 15 C -0.16 -1.55 5.37 -27.88 -0.15 -1.70 16 16 C 0.14 1.54 2.92 -27.70 -0.08 1.46 16 17 H 0.11 1.35 7.95 -51.93 -0.41 0.93 16 18 O -0.33 -4.42 10.85 -45.86 -0.50 -4.92 16 19 C 0.08 0.77 7.39 36.19 0.27 1.03 16 20 C -0.13 -1.14 6.32 -104.40 -0.66 -1.80 16 21 C -0.10 -0.70 10.04 -39.66 -0.40 -1.10 16 22 C -0.12 -0.74 10.05 -39.55 -0.40 -1.14 16 23 C -0.12 -0.77 10.05 -39.55 -0.40 -1.17 16 24 C -0.09 -0.70 10.04 -39.66 -0.40 -1.09 16 25 C -0.12 -1.16 5.63 -104.40 -0.59 -1.75 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.39 10.56 7.67 -40.82 -0.31 10.24 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.84 7.97 -51.93 -0.41 0.42 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 38 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -35.14 342.11 -9.26 -44.40 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.68 Total: 7.99 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.18 Total: -2.69 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.05 Total: -57.30 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.58 Total: -14.98 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.14 -9.26 -44.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149351393.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.835 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds